-
1
-
-
84903827354
-
Computational enzyme design: Transitioning from catalytic proteins to enzymes
-
25005925
-
Mak WS, Siegel JB (2014) Computational enzyme design: Transitioning from catalytic proteins to enzymes. Current opinion in structural biology 27:87-94. doi: 10.1016/j.sbi.2014.05.010 PMID: 25005925
-
(2014)
Current Opinion in Structural Biology
, vol.27
, pp. 87-94
-
-
Mak, W.S.1
Siegel, J.B.2
-
2
-
-
84925426233
-
Computational protein design enables a novel one-carbon assimilation pathway
-
Siegel JB, Smith AL, Poust S, Wargacki AJ, Bar-Even A, et al. (2015) Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences 112:3704-3709.
-
(2015)
Proceedings of the National Academy of Sciences
, vol.112
, pp. 3704-3709
-
-
Siegel, J.B.1
Smith, A.L.2
Poust, S.3
Wargacki, A.J.4
Bar-Even, A.5
-
3
-
-
84891421517
-
Computational tools for designing and engineering enzymes
-
24780274
-
Damborsky J, Brezovsky J (2014) Computational tools for designing and engineering enzymes. Current Opinion in Chemical Biology 19:8-16. doi: 10.1016/j.cbpa.2013.12.003 PMID: 24780274
-
(2014)
Current Opinion in Chemical Biology
, vol.19
, pp. 8-16
-
-
Damborsky, J.1
Brezovsky, J.2
-
4
-
-
84871377260
-
Computational design of an α-Gliadin Peptidase
-
23153249
-
Gordon SR, Stanley EJ, Wolf S, Toland A, Wu SJ, et al. (2012) Computational design of an α-Gliadin Peptidase. Journal of the American Chemical Society 134:20513-20520. doi: 10.1021/ja3094795 PMID: 23153249
-
(2012)
Journal of the American Chemical Society
, vol.134
, pp. 20513-20520
-
-
Gordon, S.R.1
Stanley, E.J.2
Wolf, S.3
Toland, A.4
Wu, S.J.5
-
5
-
-
84860211608
-
A Synthetic Recursive "+1" Pathway for Carbon Chain Elongation
-
22242720
-
Marcheschi RJ, Li H, Zhang K, Noey EL, Kim S, et al. (2012) A Synthetic Recursive "+1" Pathway for Carbon Chain Elongation. ACS Chemical Biology 7:689-697. doi: 10.1021/cb200313e PMID: 22242720
-
(2012)
ACS Chemical Biology
, vol.7
, pp. 689-697
-
-
Marcheschi, R.J.1
Li, H.2
Zhang, K.3
Noey, E.L.4
Kim, S.5
-
6
-
-
84862776507
-
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis
-
22306579
-
Khare SD, Kipnis Y, Greisen P Jr., Takeuchi R, Ashani Y, et al. (2012) Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis. Nat Chem Biol 8:294-300. doi: 10. 1038/nchembio.777 PMID: 22306579
-
(2012)
Nat Chem Biol
, vol.8
, pp. 294-300
-
-
Khare, S.D.1
Kipnis, Y.2
Greisen, P.3
Takeuchi, R.4
Ashani, Y.5
-
7
-
-
33644874615
-
ProTherm and ProNIT: Thermodynamic databases for proteins and protein-nucleic acid interactions
-
16381846
-
Kumar MS, Bava KA, Gromiha MM, Prabakaran P, Kitajima K, et al. (2006) ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. Nucleic Acids Research 34:D204-D206. PMID: 16381846
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D204-D206
-
-
Kumar, M.S.1
Bava, K.A.2
Gromiha, M.M.3
Prabakaran, P.4
Kitajima, K.5
-
8
-
-
79551470095
-
Role of conformational sampling in computing mutation-induced changes in protein structure and stability
-
Kellogg EH, Leaver-Fay A, Baker D (2011) Role of conformational sampling in computing mutation-induced changes in protein structure and stability. Proteins: Structure, Function, and Bioinformatics 79:830-838.
-
(2011)
Proteins: Structure, Function, and Bioinformatics
, vol.79
, pp. 830-838
-
-
Kellogg, E.H.1
Leaver-Fay, A.2
Baker, D.3
-
9
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
12079393
-
Guerois R, Nielsen JE, Serrano L (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. Journal of molecular biology 320:369-387. PMID: 12079393
-
(2002)
Journal of Molecular Biology
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
11
-
-
84921266847
-
Mapping of amino acid substitutions conferring herbicide resistance in wheat glutathione transferase
-
24905764
-
Govindarajan S, Mannervik B, Silverman JA, Wright K, Regitsky D, et al. (2014) Mapping of amino acid substitutions conferring herbicide resistance in wheat glutathione transferase. ACS synthetic biology 4:221-227. doi: 10.1021/sb500242x PMID: 24905764
-
(2014)
ACS Synthetic Biology
, vol.4
, pp. 221-227
-
-
Govindarajan, S.1
Mannervik, B.2
Silverman, J.A.3
Wright, K.4
Regitsky, D.5
-
12
-
-
34147184400
-
Engineering proteinase K using machine learning and synthetic genes
-
17386103
-
Liao J, Warmuth MK, Govindarajan S, Ness JE, Wang RP, et al. (2007) Engineering proteinase K using machine learning and synthetic genes. BMC biotechnology 7:16. PMID: 17386103
-
(2007)
BMC Biotechnology
, vol.7
, pp. 16
-
-
Liao, J.1
Warmuth, M.K.2
Govindarajan, S.3
Ness, J.E.4
Wang, R.P.5
-
14
-
-
84923321398
-
Evolvability as a Function of Purifying Selection in TEM-1 β-Lactamase
-
25723163
-
Stiffler MA, Hekstra DR, Ranganathan R (2015) Evolvability as a Function of Purifying Selection in TEM-1 β-Lactamase. Cell 160:882-892. doi: 10.1016/j.cell.2015.01.035 PMID: 25723163
-
(2015)
Cell
, vol.160
, pp. 882-892
-
-
Stiffler, M.A.1
Hekstra, D.R.2
Ranganathan, R.3
-
15
-
-
34547597634
-
Crystal Structures of Paenibacillus polymyxa β-Glucosidase B Complexes Reveal the Molecular Basis of Substrate Specificity and Give New Insights into the Catalytic Machinery of Family I Glycosidases
-
17585934
-
Isorna P, Polaina J, Latorre-Garcia L, Canada FJ, Gonzalez B, et al. (2007) Crystal Structures of Paenibacillus polymyxa β-Glucosidase B Complexes Reveal the Molecular Basis of Substrate Specificity and Give New Insights into the Catalytic Machinery of Family I Glycosidases. Journal of Molecular Biology 371:1204-1218. PMID: 17585934
-
(2007)
Journal of Molecular Biology
, vol.371
, pp. 1204-1218
-
-
Isorna, P.1
Polaina, J.2
Latorre-Garcia, L.3
Canada, F.J.4
Gonzalez, B.5
-
18
-
-
80052723466
-
Improvement of a potential anthrax therapeutic by computational protein design
-
21768086
-
Wu SJ, Eiben CB, Carra JH, Huang I, Zong D, et al. (2011) Improvement of a potential anthrax therapeutic by computational protein design. Journal of Biological Chemistry 286:32586-32592. doi: 10. 1074/jbc. M111.251041 PMID: 21768086
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 32586-32592
-
-
Wu, S.J.1
Eiben, C.B.2
Carra, J.H.3
Huang, I.4
Zong, D.5
-
19
-
-
2642699794
-
Rapid and efficient site-specific mutagenesis without phenotypic selection
-
Kunkel TA (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proceedings of the National Academy of Sciences 82:488-492.
-
(1985)
Proceedings of the National Academy of Sciences
, vol.82
, pp. 488-492
-
-
Kunkel, T.A.1
-
21
-
-
33748633480
-
Electrostatic Basis for Enzyme Catalysis
-
16895325
-
Warshel A, Sharma PK, Kato M, Xiang Y, Liu H, et al. (2006) Electrostatic Basis for Enzyme Catalysis. Chemical Reviews 106:3210-3235. PMID: 16895325
-
(2006)
Chemical Reviews
, vol.106
, pp. 3210-3235
-
-
Warshel, A.1
Sharma, P.K.2
Kato, M.3
Xiang, Y.4
Liu, H.5
-
22
-
-
0028609166
-
Mechanisms of enzymatic glycoside hydrolysis
-
7712292
-
McCarter JD, Withers SG (1994) Mechanisms of enzymatic glycoside hydrolysis. Curr Opin Struct Biol 4:885-892. PMID: 7712292
-
(1994)
Curr Opin Struct Biol
, vol.4
, pp. 885-892
-
-
McCarter, J.D.1
Withers, S.G.2
-
23
-
-
0030879888
-
Orbital steering in the catalytic power of enzymes: Small structural changes with large catalytic consequences
-
9211842
-
Mesecar AD, Stoddard BL, Koshland DE Jr., (1997) Orbital steering in the catalytic power of enzymes: small structural changes with large catalytic consequences. Science 277:202-206. PMID: 9211842
-
(1997)
Science
, vol.277
, pp. 202-206
-
-
Mesecar, A.D.1
Stoddard, B.L.2
Koshland, D.E.3
-
24
-
-
84929156528
-
Extensive site-directed mutagenesis reveals interconnected functional units in the alkaline phosphatase active site
-
Sunden F, Peck A, Salzman J, Ressl S, Herschlag D (2015) Extensive site-directed mutagenesis reveals interconnected functional units in the alkaline phosphatase active site. eLife 4.
-
(2015)
ELife
, vol.4
-
-
Sunden, F.1
Peck, A.2
Salzman, J.3
Ressl, S.4
Herschlag, D.5
-
25
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
19363495
-
Gibson DG, Young L, Chuang R-Y, Venter JC, Hutchison CA, et al. (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nature methods 6:343-345. doi: 10.1038/nmeth.1318 PMID: 19363495
-
(2009)
Nature Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.3
Venter, J.C.4
Hutchison, C.A.5
-
26
-
-
79956088540
-
De novo enzyme design using Rosetta3
-
21603656
-
Richter F, Leaver-Fay A, Khare SD, Bjelic S, Baker D (2011) De novo enzyme design using Rosetta3. PLoS One 6:e19230. doi: 10.1371/journal.pone.0019230 PMID: 21603656
-
(2011)
PLoS One
, vol.6
, pp. e19230
-
-
Richter, F.1
Leaver-Fay, A.2
Khare, S.D.3
Bjelic, S.4
Baker, D.5
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