Improvement of the submergence tolerance and the brown planthopper resistance of the Thai jasmine rice cultivar KDML105 by pyramiding Sub1 and Qbph12

Field Crops Research

Volumn 188, Issue , 2016, Pages 105-112

  Korinsak, Siriporn ^a   Siangliw, Meechai ^a   Kotcharerk, Jate ^b   Jairin, Jirapong ^c   Siangliw, Jonaliza L ^a   Jongdee, Boonrat ^c   Pantuwan, Grienggrai ^d   Sidthiwong, Nitat ^e   Toojinda, Theerayut ^a  

^a KASETSART UNIVERSITY   (Thailand)

^b Phitsanulok Rice Research Center   (Thailand)

^c Ubon Ratchathani Rice Research Center   (Thailand)

^d Bureau of Rice Research and Development (Rice Department)   (Thailand)

^e Chiang Rai Rice Research Center   (Thailand)

Author keywords

Brown planthopper resistance; Jasmine rice; KDML105; Pyramiding; Qbph12; Sub1; Submergence tolerance

Indexed keywords

CLIMATE CHANGE; CROP IMPROVEMENT; CULTIVAR; FLASH FLOOD; GENE; GENETIC MARKER; LOWLAND ENVIRONMENT; PEST OUTBREAK; PEST RESISTANCE; PLANTHOPPER; RAINFED AGRICULTURE; RICE; SUBMERGENCE;

THAILAND;

JASMINUM; MAGNOLIOPHYTA; NILAPARVATA LUGENS;

EID: 84958178445     PISSN: 03784290     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fcr.2015.10.025     Document Type: Article

References (71)

1. Alam S.N., Cohen M.B. Detection and analysis of QTLs for resistance to the brown planthopper, Nilaparvata lugens, in a doubled-haploid rice population. Theor. Appl. Genet. 1998, 97:1370-1379.
2. Babu R., Nair S.K., Prasanna B.M., Gupta H.S. Integrating marker-assisted selection in crop breeding-prospects and challenges. Curr. Sci. 2004, 87:607-619.
3. Bailey-Serres J., Fukao T., Ronald P., Ismail A., Heuer S., Mackill D. Submergence tolerant rice: SUB1's journey from landrace to modern cultivar. Rice 2010, 3:138-147.
4. Cagampang G.B., Pathak M.D., Juliano B.O. Metabolic changes in the rice plant during infestation by the brown planthopper, Nilaparvata lugens Stål (Hemiptera: Delphacidae). Appl. Entomol. Zool. 1974, 19:174-184.
5. Cuc L.M., Huyen L.T.N., Hien P.T.M., Hang V.T.T., Dam N.Q., Mui P.T., Quang V.D., Ismail A.M., Ham L.H. Application of marker assisted backcrossing to introgress the submergence tolerance QTLSUB1 into the Vietnam elite rice variety-AS996. Am. J. Plant Sci. 2012, 3:528-536.
6. Deen R., Ramesh K., Gautam S.K., Rao Y.K., Lakshmi V.J., Viraktamath B.C., Brar D.S., Ram T. Identification of new gene for BPH resistance introgressed from O. rufipogon. Rice Genet. Newsl. 2010, 25:70-71.
7. Dey M.M., Upadhyaya H.K. Yield Loss Due to Drought, Cold and Submergence in Asia: Progress and Priorities 1996, 291-303. IRRI.
8. Du B., Zhang W., Liu B., Hu J., Wei Z., Shi Z., He R., Zhu L., Chen R., Han B., He G. Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. PNAS 2009, 106:22163-22168.
9. Easterling W.E., Aggarwal P.K., Batima P., Brander K.M., Erda L., Howden S.M., Kirilenko A., Morton J., Soussana J.F., Schmidhuber J., Tubiello F.N. Food, fiber and forest products. Climate Change 2007: Impacts, Adaptation and Vulnerability. Contribution of Working Group II to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change 2007, 273-313. Cambridge University Press, Cambridge, UK. M.L. Parry, O.F. Canziani, J.P. Palutikof, P.J.V.D. Linden, C.E. Hanson (Eds.).
10. Fukao T., Bailey-Serres J. Ethylene-a key regulator of submergence responses in rice. Plant Sci. 2008, 175:43-51.
11. Hasan M.M., Rafii M.Y., Ismail M.R., Mahmood M., Rahim H.A., Alam M.A., Ashkani S., Malek M.A., Latif M.A. Marker-assisted backcrossing: a useful method for rice improvement. Biotechnol. Biotechnol. Equip. 2015, 29:237-254.
12. He J., Liu Y., Liu Y., Jiang L., Wu H., Kang H., Liu S., Chen L., Liu X., Cheng X., Wan J. High-resolution mapping of brown planthopper (BPH) resistance gene Bph27(t) in rice (Oryza sativa L.). Mol. Breed. 2013, 31:549-557.
13. Hu J., Li X., Wu C., Yang C., Hua H., Gao G., Xiao J., He Y. Pyramiding and evaluation of the brown planthopper resistance genes Bph14 and Bph15 in hybrid rice. Mol. Breed. 2012, 29:61-69.
14. IRRI Standard Evaluation System for Rice 2002, IRRI, Manila, Philippines.
15. Jairin J., Teangdeerith S., Leelagud P., Kothcharerk J., Sansen K., Yi M., Vanavichit A., Toojinda T. Development of rice introgression lines with brown planthopper resistance and KDML105 grain quality characteristics through marker-assisted selection. Field Crops Res. 2009, 110:263-271.
16. Jairin J., Teangdeerith S., Leelagud P., Phengrat K., Vanavichit A., Toojinda T. Physical mapping of Bph3, a brown planthopper resistance locus in rice. Maejo Int. J. Sci. Technol. 2007, 1:166-177.
17. Jairin J., Toojinda T., Tragoonrung S., Tayapat S., Vanavichit A. Multiple genes determining brown planthopper (Nilaparvata lugens Stål) resistance in backcross introgressed lines of Thai jasmine rice 'KDML105'. Sci. Asia 2005, 31:129-135.
18. Jantaboon J., Siangliw M., Im-mark S., Jamboonsri W., Vanavichit A., Toojinda T. Ideotype breeding for submergence tolerance and cooking quality by marker-assisted selection in rice. Field Crops Res. 2011, 123:206-213.
19. Jena K.K., Jeung J.U., Lee J.H., Choi H.C., Brar D.S. High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18(t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L.). Theor. Appl. Genet. 2006, 112:288-297.
20. Jena K.K., Kim S.M. Current status of brown planthopper (BPH) resistance and genetics. Rice 2010, 3:161-171.
21. Jiang G.H., Xu C.G., Tu J.M., Li X.H., He Y.Q., Zhang Q.F. Pyramiding of insect- and disease-resistance genes into an elite indica, cytoplasm male sterile restorer line of rice, 'Minghui 63'. Plant Breed. 2004, 123:112-116.
22. Khanh T.D., Linh L.H., Linh T.H., Ham L.H., Xuan T.D. Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into the Vietnamese elite rice variety. J. Plant Breed. Crop Sci. 2013, 5:26-33.
23. Lanceras J.C., Huang Z.L., Naivikul O., Vanavichit A., Ruanjaichon V., Tragoonrung S. Mapping of genes for cooking and eating qualities in Thai Jasmine rice (KDML105). DNA Res. 2000, 7:93-101.
24. Lee J.H., Yeo U.S., Cho J.H., Lee Y., Song Y.C., Shine M.S., Kang H.W., Sohn J.K. Marker assisted selection of brown planthopper resistance and development of multi-resistance to insect and diseases in rice (Oryza sativa L.). Korean J. Breed. Sci. 2011, 43:413-421.
25. Li J., Xiao J., Grandillo S., Jiang L., Wan Y., Deng Q., Yuan L., McCouch S.R. QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome 2004, 47:697-704.
26. Li J.B., Xia M.Y., Qi H.X., He G.C., Wan B.L., Zha Z.P. Marker-assisted selection for brown planthopper (Nilaparvata lugens Stal) resistance genes Bph14 and Bph15 in rice. Sci. Agric. Sin. 2006, 39:2132-2137.
27. Liu Y., Su C., Jiang L., He J., Wu H., Peng C., Wan J. The distribution and identification of brown planthopper resistance genes in rice. Hereditas 2009, 146:67-73.
28. Liu Y., Wu H., Chen H., Liu Y., He J., Kang H., Sun Z., Pan G., Wang Q., Hu J., Zhou F., Zhou K., Zheng X., Ren Y., Chen L., Wang Y., Zhao Z., Lin Q., Wu F., Zhang X., Guo X., Cheng X., Jiang L., Wu C., Wang H., Wan J. A gene cluster encoding lectin receptor kinases confers broad-spectrum and durable insect resistance in rice. Nat. Biotechnol. 2015, 33:301-305.
29. Luo Y., Yin Z. Marker-assisted breeding of Thai fragrance rice for semi-dwarf phenotype, submergence tolerance and disease resistance to rice blast and bacterial blight. Mol. Breed. 2013, 32:709-721.
30. Mackill D.J. Breeding for resistance to abiotic stresses in rice: the value of the quantitative trait loci. Plant Breeding: The Arnel R Hallauer International Symposium 2006, 201-212. Blackwell Pub., Ames, IA. K.R. Lamkey, M. Lee (Eds.).
31. Mackill D.J., Ismai A.M., Pamplona A.M., Sanchez D.L., Carandang J.J., Septiningsih E.M. Stress tolerant rice varieties for adaptation to a changing climate. Crop Environ. Bioinform. 2010, 7:250-259.
32. Mackill D.J., Septiningsih E., Pamplona A.M., Sanchez D., Iftekhar K., Masudussaman A.S., Collard B., Neeraja C., Vergara G., Maghirang-Rodriguez R., Heuer S., Ismail A.M. Marker assisted selection for submergence tolerance in rice. Mol. Plant Breed. 2007, 5:207-208.
33. Manivong P., Korinsak S., Korinsak S.P., Siangliw J.L., Vanavichit A., Toojinda T. Marker-assisted selection to improve submergence tolerance, blast resistance and strong fragrance inglutinous rice. Thai J. Genet. 2014, 7:110-122.
34. Maruthasalam S., Kalpana K., Kumar K.K., Loganathan M., Poovannan K., Raja J.A.J., Kokiladevi E., Samiyappan R., Sudhakar D., Balasubramanian P. Pyramiding transgenic resistance in elite indica rice cultivars against the sheath blight and bacterial blight. Plant Cell Rep. 2007, 26:791-804.
35. Myint K.M., Fujita D., Matsumura M., Sonoda T., Yoshimura A., Yasui H. Mapping and pyramiding of two major genes for resistance to the brown planthopper (Nilaparvata lugens [Stål]) in the rice cultivar ADR52. Theor. Appl. Genet. 2011, 124:1723.
36. Nandi S., Subudhi P.K., Senadhira D., Manigbas N.L., Sen-Mandi S., Huang N. Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol. Gen. Genet. 1997, 255:1-8.
37. Narayanan N.N., Baisakh N., Oliva N.P., VeraCruz C.M., Gnanamanickam S.S., Datta K., Datta S.K. Molecular breeding: marker-assisted selection combined with biolistic transformation for blast and bacterial blight resistance in Indica rice (cv. CO39). Mol. Breed. 2004, 14:61-71.
38. Neeraja C.N., Maghirang-Rodriguez R., Pamplona A., Heuer S., Collard B.C.Y., Septiningsih E.M., Vergara G., Sanchez D., Xu K., Ismail A.M., Mackill D.J. A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Theor. Appl. Genet. 2007, 115:767-776.
39. Rahman M.L., Jiang W., Chu S.H., Qiao Y., Ham T.H., Woo M.O., Lee J., Khanam M.S., Chin J.H., Jeung J.U., Brar D.S., Jena K.K., Koh H.J. High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta. Theor. Appl. Genet. 2009, 119:1237-1246.
40. Ram P.C., Singh B.B., Singh A.K., Ram P., Sing P.N., Singh H.P., Boamfa I., Harren F., Santosa E., Singh V.P., Singh R.K. Submergence tolerance in rainfed lowland rice: physiological basis and prospects for cultivar improvement through marker-aided breeding. Field Crop Res. 2002, 76:131-152.
41. Ram T., Deen R., Gautam S.K., Ramesh K., Rao Y.K., Brar D.S. Identification of new genes for brown planthopper resistance in rice introgressed from O. glaberrima and O. minuta. Rice Genet. Newsl. 2010, 25:67-68.
42. Ramalingam J., VeraCruz C.M., Kukreja K., Chittoorr J.M., Wu J.L., Lee S.W., Baraoidan M., George M.L., Cohen M.B., Hulbert S.H., Leach J.E., Leung H. Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice. Mol. Plant-Microbe Interact. 2003, 16:14-24.
43. Redfern S.K., Azzu N., Binamira J.S. Rice in Southeast Asia: facing risks and vulnerabilities to respond to climate change. Building Resilience for Adaptation to Climate Change in the Agriculture Sector, FAO, Proceedings of a Joint FAO/OECD Workshop 2012, A. Meybeck (Ed.).
44. Ren X., Wang X., Yuan H., Weng Q., Zhu L., He G. Mapping quantitative trait loci and expressed sequence tags related to brown planthopper resistance in rice. Plant Breed. 2004, 123:342-348.
45. Ruengphayak S., Chaichumpoo E., Phromphan S., Kamolsukyunyong W., Sukhaket W., Phuvanartnarubal E., Korinsak S.P., Korinsak S., Vanavichit A. Pseudo-backcrossing design for rapidly pyramiding multiple traits into a preferential rice variety. Rice 2015, 8. 7.
46. Sarkar R.K., Reddy J.N., Sharma S.G., Ismail A.M. Physiological basis of submergence tolerance in rice and implications for crop improvement. Curr. Sci. 2006, 91:899-906.
47. Septiningsih E.M., Pamplona A.M., Sanchez D.L., Neeraja C.N., Vergara G.V., Heuer S., Ismail A.M., Mackill D.J. Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Ann. Bot. 2009, 103:151-160.
48. Septiningsih E.M., Sanchez D.L., Singh N., Sendon P.M.D., Pamplona A.M., Heuer S., Mackill D.J. Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Theor. Appl. Genet. 2012, 124:867-874.
49. Shrivastava M.N., Kumar A., Shrivastava S.K., Sahu R.K. A new gene for resistance to gall midge in rice variety Abhaya. Rice Genet. Newsl. 1994, 10:79-80.
50. Siangliw M., Toojinda T., Tragoonrung S., Vanavichit A. Thai jasmine rice carrying QTLch9 (SubQTL) is submergence tolerance. Ann. Bot. 2003, 91:255-261.
51. Soundararajan R.P., Kadirvel P., Gunathilagara J.K., Maheswaran M. Mapping of quantitative trait loci associated with resistance to brown planthopper in rice by means of a doubled-haploid population. Crop Sci. 2004, 44:2214-2220.
52. Sun L.H., Wang C.M., Su C.C., Liu Y.Q., Zhai H.Q., Wan J.M. Mapping and marker-assisted selection of a brown planthopper resistance gene bph2 in rice (Oryza sativa L.). Acta Genet. Sin. 2006, 33:717-723.
53. Tamura Y., Hattori M., Yoshioka H., Yoshioka M., Takahashi A., Wu J., Sentoku N., Yasui H. Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52. Sci. Rep. 2010, 4:5872.
54. Tanaka K., Endo S., Kazano H. Toxicity of insecticides to predators of rice planthoppers: spiders, the mirid bug and the dryinid wasp. Appl. Entomol. Zool. 2000, 35:177-187.
55. Toojinda T., Siangliw M., Tragoonrung S., Vanavichit A. Molecular genetics of submergence tolerance in rice: QTL analysis of key traits. Ann. Bot. 2003, 91:243-253.
56. Toojinda T., Tragoonrung S., Vanavichit A., Siangliw J.L., Pa-In N., Jantaboon J., Siangliw M., Fukai S. Molecular breeding for rainfed lowland rice in the Mekong region. Proceedings of the 4th International Crop Science Congress 2004.
57. Toojinda T., Tragoonrung S., Vanavichit A., Siangliw J.L., Pa-In N., Jantaboon J., Siangliw M., Fukai S. Molecular breeding for rainfed lowland rice in the Mekong Region. Plant Prod. Sci. 2005, 8:330-333.
58. Velusamy R., Kumar M.G., Johnson Y.S., Edward T. Mechanisms of resistance to the brown planthopper Nilaparvata lugens in wild rice (Oryza spp.) cultivars. Entomol. Exp. Appl. 1995, 74:245-251.
59. Wanchana S., Kamolsukyunyong W., Ruengphayak S., Toojinda T., Tragoonrung S., Vanavichit A. A rapid construction of a physical contig across a 4.5 cM region for rice grain aroma facilitates marker enrichment for positional cloning. Sci. Asia 2005, 31:299-306.
60. Wang Y., Cao L., Zhang Y., Cao C., Liu F., Huang F., Qiu Y., Li R., Lou X. Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice. J. Exp. Bot. 2015, 66:6035-6045.
61. Win K.M., Korinsak S., Jantaboon J., Siangliw M., Siangliw J.L., Sirithunya P., Vanavichit A., Pantuwan G., Jongdee B., Sidhiwong N., Toojinda T. Breeding the Thai jasmine rice variety KDML105 for non-age-related broad-spectrum resistance to bacterial blight disease based on combined marker-assisted and phenotypic selection. Field Crops Res. 2012, 137:186-194.
62. Wu H., Liu Y., He J., Liu Y., Jiang L., Liu L., Wang C., Cheng X., Wan J. Fine mapping of brown planthopper (Nilaparvata lugens Stål) resistance gene Bph28(t) in rice (Oryza sativa L.). Mol. Breed. 2014, 33:909-918.
63. Xu K., Deb R., Mackill D.J. A microsatellite marker and a codominant PCR-based marker for marker-assisted selection of submergence tolerance in rice. Crop Sci. 2004, 44:248-253.
64. Xu K., Mackill D.J. A major locus for submergence tolerance mapped on rice chromosome 9. Mol. Breed. 1996, 2:219-224.
65. Xu K., Xia X., Fukao T., Canlas P., Maghirang-Rodriguez R., Heuer S., Ismail A.I., Bailey-Serres J., Ronald P.C., Mackill D.J. Sub1A is an ethylene response factor-like gene that confers submergence tolerance to rice. Nature 2006, 442:705-708.
66. Xu K., Xu X., Fukao T., Canlas P., Maghirang-Rodriguez R., Heuer S., Ismail A.M., Bailey-Serres J., Ronald P.C., Mackill D.J. Sub1A is an ethylene response factor-like gene that confers submergence tolerance to rice. Nature 2006, 442:705-708.
67. Xu K., Xu X., Ronald P.C., Mackill D.J. A high-resolution linkage map of the vicinity of the rice submergence tolerance locus Sub1. Mol. Gen. Genet. 2000, 263:681-689.
68. Xu X.F., Mei H.W., Luo L.J., Cheng X.N., Li Z.K. RFLP-facilitated investigation of the quantitative resistance of rice to brown planthopper (Nilaparvata lugens). Theor. Appl. Genet. 2002, 104:248-253.
69. Yang H., You A., Yang Z., Zhang F., He R., Zhu L., He G. High-resolution genetic mapping at the Bph15 locus for brown planthopper resistance in rice (Oryza sativa L.). Theor. Appl. Genet. 2004, 110:182-191.
70. Yi M., Nwea K.T., Vanavichit A., Chai-arree W., Toojinda T. Marker assisted backcross breeding to improve cooking quality traits in Myanmar rice cultivar Manawthukha. Field Crops Res. 2009, 113:178-186.
71. Zhou Y.L., Xu J.L., Zhou S.C., Yu J., Xie X.W., Xu M.R., Sun Y., Zhu L.H., Fu B.Y., Gao Y.M., Li Z.K. Pyramiding Xa23 and Rxo1 for resistance to two bacterial diseases into an elite indica rice variety using molecular approaches. Mol. Breed. 2009, 23:279-287.