QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice

Genome

Volumn 47, Issue 4, 2004, Pages 697-704

  Li, Jiming ^a   Xiao, Jinhua ^a,c   Grandillo, Silvana ^a,d   Jiang, Longying ^b   Wan, Yizhen ^b   Deng, Qiyun ^b   Yuan, Longping ^b   McCouch, Susan R ^a  

^a Department of Obstetrics Gynecology   (United States)

^b China National Hybrid Rice Research and Development Center   (China)

^c MONSANTO COMPANY   (United States)

^d CNR IGV Istituto di Genetica Vegetale   (Italy)

Author keywords

Grain quality; Molecular markers; O. glaberrima; O. sativa; Quantitative trait loci (QTL)

Indexed keywords

AFRICA; ALLELE; ARTICLE; ASIA; CLASSIFICATION; COMPARATIVE STUDY; CROSS BREEDING; GENE; GENETICS; HISTOLOGY; HYBRIDIZATION; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; RICE; SPECIES DIFFERENCE;

AFRICA; ALLELES; ASIA; CROSSES, GENETIC; GENES, PLANT; HYBRIDIZATION, GENETIC; ORYZA SATIVA; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SPECIES SPECIFICITY;

ORYZA GLABERRIMA; ORYZA SATIVA;

EID: 5144230737     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G04-029     Document Type: Article

References (37)

1. Ahn, S.N., Bollich, C.N., McClung, A.M., and Tanksley, S.D. 1993. RFLP analysis of genomic regions associated with cooked-kernel elongation in rice. Theor. Appl. Genet. 87: 27-32.
2. Ayres, N.M., McClung, A.M., Larkin, P.D., Bligh, H.F.J., Jones, C.A., and Park, W.D. 1997. Microsatellites and a single- nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm. Theor. Appl. Genet. 94: 773-781.
3. Basten, C.J., Weir, B.S., and Zeng, Z.B. 1997. QTL Cartographer: a reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh, N.C.
4. Bhattacharya, K.R. 1979. Gelatinization temperature of rice starch and its determination. In Proceedings of the Workshop on Chemical Aspects of Rice Grain Quality, Los Banos, Laguna, Philippines, 23-25 October 1978. International Rice Research Institute, Manila, Philippines. pp. 231-249.
5. Bouharmont, J., and Briquet, M. 1986. Interspecific hybridization and male sterility in rice. In Rice genetics. Proceedings of the International Rice Genetics Symposium, Manila, Philippines 27-31 May 1985. Edited by IRRI. International Rice Research Institute, Manila, Philippines. pp. 231-249.
6. Cagampang, G.B., Perez, C.M., and Juliano, B.O. 1973. A gel- consistency test for eating quality of rice. J. Sci. Food Agric. 24: 1589-1594.
7. Causse, M.A., Fulton, T.M., Cho, Y.G., Ahn, S.N., Chunwongse, J., Wu, K.S., Xiao, J.H., Yu, Z.H., Ronald, P.C., Harrington, S.E., Second, G., McCouch, S.R., and Tanksley, S.D. 1994. Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics, 138: 1251-1274.
8. Chang, T.T., and Li, C.C. 1980. Chapter 3. Genetics and breeding. In Rice: production and utilization. Edited by B.S. Luh. The AVI Publishing Company, Inc, New York. pp. 47-146.
9. Chen, X., Temnykh, S., Xu, Y., Cho, Y.G., and McCouch, S.R. 1997. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor. Appl. Genet. 95: 553-567.
10. Chinese Bureau of Standardization. 1982. Method for determination of crude protein in cereals and bean seeds (semi-micro- Kjeldahl method). GB 2905-32, UDC 633.1/8.
11. Davis, G.L., McMullen, M.D., Baysdorfer, C., Musket, T., Grant, D., Staebell, M., Xu, G., Polacco, M., Koster, L., Melia-Hancock, S., Houchins, K., Chao, S., and Coe Jr, E.H. 1999. A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map. Genetics, 152: 1137-1172.
12. Erickson, J.R. 1969. Cytoplasmic male sterility in rice (Oryza sativa L.). Agron. Abstr. 6.
13. He, P., Li, S.G., Qian, Q., Ma, Y.Q., Li, J.Z., Wang, W.M., Chen, Y., and Zhu, L.H. 1999. Genetic analysis of rice grain quality. Theor. Appl. Genet. 98: 502-508.
14. Hsieh, S.C., and Kuo, Y.C. 1979. Genetical studies on protein content and other agronomic characters in the cross between indica and japonica rices. Breeding for high protein content in rice. IV. Proc. Natl. Sci. Counc. 3: 397-403.
15. Huang, N., Parco, A., Mew, T., Magpantay, G., McCouch, S., Guiderdoni, E., Xu, J., Subudhi, P., Angeles, E.R., and Khush, G.S. 1997. RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a double haploid rice population. Mol. Breed. 3: 105-113.
16. Ikehashi, H., and Khush, G.S. 1979. Methodology of assessing appearance of the rice grain, including chalkiness and whiteness. In Proceedings of the workshop on chemical aspects of rice grain quality, Los Banos, Laguna, Philippines, 23-25 October 1978. Edited by IRRI. International Rice Research Institute, Manila, Philippines. pp. 223-229.
17. Jennings, P.R., Coffman, W.R., and Kauffman, H.E. 1979. Rice improvement. International Rice Research Institute, Manila, Philippines.
18. Jones, M.P., Dingkuhn, M., Aluko, G.K., and Semon, M. 1997. Interspecific Oryza saliva x Oryza glaberrima Steud. progenies in upland rice improvement. Euphytica, 94: 237-246.
19. Jones, M., Yacouba, S., Nwilene, F., Beye, A., Dobo, M., and Jalloh, A. 2001. Oryza glaberiima x Oryza sativa interspecifics for Africa. In Rice research and production in the 21st century. Symposium honoring Robert F. Chandler, Jr. Edited by W.G. Rockwood. International Rice Research Institute, Los Banos, Philippines. pp. 137-149.
20. Kaushik, R.P., and Khush, G.S. 1991. Genetic analysis of endosperm mutants in rice Oryza sativa L. Theor. Appl. Genet. 83: 146-152.
21. Li, J. 2003. The natural history of rice, rice as a food, and rice as a superfood. In Encyclopedia of food and culture. Edited by S.H. Katz and W.W. Weaver. Charles Scribner's Sons, New York. pp. 190-205.
22. Li, J., and Yuan, L. 2000. Hybrid rice: genetics, breeding and seed production. Plant Breed. Rev. 17: 15-158.
23. Li, T., Takano, T., Nagamura, Y., and Takeda, G. 1994. Linkage analysis of rice lactate dehydrogenase gene. Rice Genet. Newsl. 11: 109-111.
24. Little, R.R., Hilder, G.B., and Dawson, E.H. 1958. Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chem. 35: 111-126.
25. Liu, H.I., Lin, L.F., Song, S., and Hong, M.C. 1988. The study on the relationship of eating quality and chemical quality of different non-waxy rice species. In Rice grain quality, Proceedings of Symposium on Grain Quality, Taichung District Agricultural Improvement Station, Taiwan, 7-9 April 1988. Edited by S. Song and M. Hong. Taichung District Agricultural Improvement Station, Taiwan. pp. 76-90.
26. McCouch, S.R., Cho, Y.G., Yano, M., Paul, E., Blinstrub, M., Morishima, H., and Kinoshita, T. 1997. Suggestions for QTL nomenclature for rice. Available from http://www.gramene.org/ newsletters/rice_genetics/rgn14/v14p11.html.
27. Morishima, H. 1984. Wild plants and domestication. In Biology of rice. Developments in crop science 7. Edited by S. Tsunoda, and N. Norindo Takahashi. Japan Scientific Societies Press, Tokyo. pp. 3-30.
28. Nelson, J.C. 1997. Q-gene: software for marker-based genomic analysis and breeding. Mol. Breed. 3: 239-245.
29. Perez, C.M., and Juliano, B.O. 1978. Modification of the simplified amylose test for milled rice. Starke, 30: 424-426.
30. Redoña, E.D., and Mackill, D.J. 1998. Quantitative trait loci analysis for rice panicle and grain characteristics. Theor. Appl. Genet. 96: 957-963.
31. Schon, C.C., Melchinger, A.E., Boppenmaier, J., Brunklaus, J.E., Herrmann, R.G., and Seitzer, J.F. 1994. RFLP mapping in maize: quantitative trait loci affecting testcross performance of elite European flint lines. Crop Sci. 34: 378-389.
32. Tanksley, S.D., Fulton, T.M., and McCouch, S.R. 1993. Linkage map of rice, Oryza sativa (2n = 24). In Genetic maps of complex genomes. Book 6. Plants. Edited by S.J. O'Brien. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. pp. 61-79.
33. Temnykh, S., Park, W.D., Ayres, N., Cartinhour, S., Hauck, N., Lipovich, L., Cho, Y.G., Ishii, T., and McCouch, S.R. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100: 697-712.
34. Veldboom, L.R., and Lee, M. 1994. Molecular-marker-facilitated studies of morphological traits in maize. II. Determination of QTLs for grain yield and yield components. Theor. Appl. Genet. 89: 451-458.
35. Veldboom, L.R., Lee, M., and Woodman, W.L. 1994. Molecular marker-facilitated studies in an elite maize population. I.Linkage analysis and determination of QTL for morphological traits. Theor. Appl. Genet. 88: 7-16.
36. Williams, V.R., Wu, W.T., Tsai, H.Y., and Bates, H.G. 1958. Varietal differences in amylose content of rice starch. J. Agr. Food Chem. 8: 47-48.
37. Wilson, W.A., Harrington, S.E., Woodman, W.L., Lee, M., Sorrells, M.E., and McCouch, S.R. 1999. Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics, 153: 453-473.