High-resolution genetic mapping at the Bph15 locus for brown planthopper resistance in rice (Oryza sativa L.)

Theoretical and Applied Genetics

Volumn 110, Issue 1, 2004, Pages 182-191

  Yang, Haiyuan ^a   You, Aiqing ^a   Yang, Zhifan ^a   Zhang, Futie ^a   He, Ruifeng ^a   Zhu, Lili ^a   He, Guangcun ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CLONING; CULTIVATION; GENES; INSECT CONTROL; PLANTS (BOTANY);

BROWN PLANTHOPPER (BPH); HIGH-RESOLUTION GENETIC MAPPING; RECOMBINANT PLANTS; SEQUENCE ANALYSIS;

CROPS;

PLANT DNA;

ANIMAL; ARTICLE; CHROMOSOME MAP; GENE; GENETIC MARKER; GENETICS; HEMIPTERA; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PLANT CHROMOSOME; PLANT DISEASE; RICE;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; HEMIPTERA; ORYZA SATIVA; PHYSICAL CHROMOSOME MAPPING; PLANT DISEASES;

BIOLOGICAL TESTS; CLONES; CULTIVATION; GENES; INSECT CONTROL; PLANTS; RICE;

ARCHAEORRHYNCHA; BACTERIA (MICROORGANISMS); INSECTA; NILAPARVATA LUGENS; ORYZA SATIVA; ZIZANIA;

EID: 13844273253     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1844-0     Document Type: Article

References (40)

1. Anderson LK, Doyle GC, Brigham B, Carter J, Hooker KD, Lai A, Rice M, Stack SM (2003) High-resolution crossover maps for each bivalent of Zea mays using recombination nodules. Genetics 165:849-865
2. Chen M, Presting G, Barbazuk W, Goicoechea J, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, Li P, Liu J, Hatfield J, Main D, Farrar K, Henderson C, Barnett L, Costa R, Williams B, Walser S, Atkins M, Hall C, Budiman M, Tomkins J, Luo M, Bancroft I, Salse J, Regad F, Mohapatra T, Singh N, Tyagi A, Soderlund C, Dean R, Wing R (2002) An integrated physical and genetic map of the rice genome. Plant Cell 14:537-545
3. Copenhaver GP, Browne WE, Preuss D (1998) Assaying genome-wide recombination and centromere functions with Arabidopsis tetrads. Genetics 95:247-252
4. Dussle C, Quint M, Melchinger A, Xu M, Lübberstedt T (2003) Saturation of two chromosome regions conferring resistance to SCMV with SSR and AFLP markers by targeted BSA. Theor Appl Genet 106:485-493
5. Feng Q, Zhang YJ, Hao P, Wang SG, Fu G, Huang YC, Li Y, Zhu JJ, Liu YL, Hu X, Jia PX, Zhang Y, Zhao Q, Ying K, Yu SL, Tang YS, Weng QJ, Zhang L, Lu Y, Mu J, Lu Q, Zhang LS, Yu Z, Fan DL, Liu XH, Lu TT, Li C, Wu YR, Sun TG, Lei HY, Li T, Hu H, Guan JP, Wu M, Zhang RQ, Zhou B, Chen ZH, Chen L, Jin ZQ, Wang R, Yin HF, Cai Z, Ren SG, Lv G, Gu WY, Zhu GF, Tu YF, Jia J, Zhang Y, Chen J, Kang H, Chen XY, Shao CY, Sun Y, Hu QP, Zhang XL, Zhang W, Wang LJ, Ding CW, Sheng HH, Gu JL, Chen ST, Ni L, Zhu FH, Chen W, Lan LF, Lai Y, Cheng ZK, Gu MH, Jiang JM, Li JY, Hong GF, Xue YB, Han B (2002) Sequence and analysis rice chromosome 4. Nature 420:316-320
6. Frohman LA, Mizobuchi M (1992) A rapid and simple method for labeling short DNA fragments using Taq polymerase. Biotechniques 12:350-354
7. Fu Q, Chen W, Zhang ZT (1994) Evaluation for resistance of the interspecific somatic rice hybrids to Nilaparvata lugens. Chin J Rice Sci 8:247-249
8. Goff SA, Ricke D, Lan TH, Presting G., Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100
9. Heinrichs EA (1979) Control of leafhopper and planthopper vectors of rice viruses. In: Moramorosch K, Arris KF (eds) Leafhopper vectors and planthopper disease agents. Academic Press, New York, pp 529-558
10. Hirabayashi H, Ogawa T (1995) RFLP mapping of Bph-1 (the brown planthopper resistance gene) in rice. Jpn J Breed 45:369-371
11. Hirabayashi H, Angeles ER, Kaji R, Ogawa T, Brar DS, Khush GS (1998) Identification of the brown planthopper resistance gene derived from O. officinalis using molecular markers in rice (abstract in Japanese). Breed Sci 48[Suppl1]:82
12. Huang Z, He GC, Shu LH, Li XH, Zhang QF (2001) Identification and mapping of two brown planthopper resistance genes in rice. Theor Appl Genet 102:929-934
13. Ikeda R (1985) Studies on the inheritance of resistance to the rice brown planthopper (Nilaparvata lugens Stål) and the breeding of resistant rice cultivars. Bull Nat Agric Res Cent 3:51-54
14. IRRI (1988) Standard evaluation system for rice. International Rice Research Institute, Manila
15. Ishii T, Brar DS, Multani DS, Khush GS (1994) Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O. sativa. Genome 37:217-221
16. Kawaguchi M, Murata K, Ishii T, Takumi S, Mori N, Nakamura C (2001) Assignment of a brown planthopper (Nilaparvata lugens Stål) resistance gene bph4 to the rice chromosome 6. Breed Sci 51:13-18
17. Khush GS (1979) Genetics of and breeding for resistance to brown planthopper. Threat to rice production in Asia. International Rice Research Institute, Los Banos
18. Lincoln S, Daly M, Lander ES (1992) Constructing genetic maps with MAPMAKER/EXP 3.0, 3rd edn. Whitehead Institute Technical Report, Cambridge, Massachusetts
19. Liu GY, Van HH, Fu Q, Qian Q, Zhang ZT, Zhai WX, Zhu LH (2001) Mapping of a new gene for brown planthopper resistance in cultivated rice introgressed from Oryza eichingeri. Chin Sci Bull 46:1459-1462
20. Liu KD, Wang J, Li HB, Xu CG, Liu AM, Li XH, Zhang Q (1997) A genome-wide analysis of wide compatibility in rice and the precise location of the S5 locus in the molecular map. Theor Appl Genet 95:809-814
21. Liu Y, Whittier R (1995) Thermal asymmetric interlaced PCR: Automatable amplification and sequencing of insert end fragments from Pl and YAC clones for chromosome walking. Genomics 25:674-681
22. Murai H, Hashimoto Z, Sharma PN, Shimizu T, Murata K, Takumi S, Mori N, Kawasaki S, Nakamura C (2001) Construction of a high-resolution linkage map of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene bph2. Theor Appl Genet 103:526-532
23. Murata K, Fujiwara M, Kaneda C, Takumi S, Mori N, Nakamura C (1998) RFLP mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene bph2 of indica rice introgressed into a japonica breeding line "Norin-PL4". Genes Genet Syst 73:359-364
24. Murata K, Fujiwara M, Murai H, Takumi S, Mori N, Nakamura C (2001) Mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene Bph9 on the long arm of rice chromosome 12. Cereal Res Commun 29:245-250
25. Murray MG, Thompson WF (1980) Rapid isolation of high molecular-weight plant DNA. Nucleic Acids Res 8:4321-4325
26. Panaud O, Chen X, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252:597-607
27. Ren X, Weng QM, Zhu LL, He GC (2004) Dynamic mapping of quantitative trait loci for resistance to brown planthopper in rice. Cereal Res Commun 32:31-38
28. Renganayaki K, Fritz AK, Sadasivam S, Pammi S, Harrington SE, McCouch SR, Kumar SM, Reddy AS (2002) Mapping and progress toward map-based cloning of brown planthopper biotype-4 resistance gene introgressed from Oryza officinalis into cultivated rice, O. sativa. Crop Sci 42:2112-2117
29. Sharma PN, Ketipearachchi Y, Murata K, Torii A, Takumi S, Mori N, Nakamura C (2003) RFLP/AFLP mapping of a brown planthopper (Nilaparvata lugens Stål) resistance gene Bph1 in rice. Euphytica 129(1):109-117
30. Shi Z, Ren X, Weng Q, Li X, He GC (2003) Construction of a genomic library from a brown planthopper-resistant rice line using a transformation-competent vector and identification of clones spanning the Qbp1 locus. Plant Sci 165:879-885
31. Sogawa K, Liu GJ, Shen JH (2003) A review on the hyper-susceptibility of Chinese hybrid rice to insect pests. Chin J Rice Sci 17:23-30
32. Takahashi Y, Shomura A, Sasaki T, Yano M (2001) Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. Proc Natl Acad Sci U S A 98:7922-7927
33. Takita T (1996) A new dominant gene for brown planthopper resistance found in an improved Japanese rice strain (abstract in Japanese). Breed Sci 46 [Suppl 1]:211
34. Tanksley SD, Ganal MW, Martin GB (1995) Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet 11:64-68
35. Temnykh S, Declerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441-1452
36. Vos P, Hogers R, Bleeker M, Reijans M, Van De Lee T, Homes M, Fritjers A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
37. Wu J, Yamagata H, Hayashi-Tsugane M, Hijishita S, Fujisawa M, Shibata M, Iton Y, Nakamura M, Sakaguchi M, Yoshihara R, Kobayashi H, Ito K, Karasawa W, Yamamoto M, Saji S, Katagiri S, Kanamori H, Namiki N, Katayose Y, Matsumoto T, Sasaki T (2004) Composition and structure of the centromeric region of rice chromosome 8. Plant Cell 16:967-976
38. Xu J, Yang D, Domingo J, Ni J, Huang N (1998) Screening for overlapping bacterial artificial chromosome clones by PCR analysis with an arbitrary primer. Proc Natl Acad Sci USA 95:5661-5666
39. Yang HY, Ren X, Weng QM, Zhu LL, He GC (2002) Molecular mapping and genetic analysis of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene. Hereditas 136:39-43
40. Zhang Y, Huang Y, Zhang L, Li Y, Lu T, Lu Q, Feng Q, Zhao Q, Cheng Z, Xue Y, Wing RA, Han B (2004) Structural features of the rice chromosome 4 centromere. Nucleic Acids Res 32:2023-2033