A Microsatellite Marker and a Codominant PCR-Based Marker for Marker-Assisted Selection of Submergence Tolerance in Rice

Crop Science

Volumn 44, Issue 1, 2004, Pages 248-253

  Xu, Kenong ^a   Deb, Rashmi ^a   Mackill, David J ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

[No Author keywords available]

Indexed keywords

EMBRYOPHYTA; JAPONICA; ORYZA SATIVA; TRANSPOSONS;

EID: 0346398046     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2004.2480     Document Type: Article

References (18)

1. Chen, X., S. Temnykh, Y. Xu, Y.G. Cho, and S.R. McCouch. 1997. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor. Appl. Genet. 95:553-567.
2. Lander, E.S., P. Green, J. Abrahamson, A. Barlow, M. Daly, S.E. Lincoln, and L. Newburg. 1987. Mapmaker: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
3. Mackill, D.J. 1995. Classifying japonica rice cultivars with RAPD markers. Crop Sci. 35:889-894.
4. Mackill, D.J., M.M. Amante, B.S. Vergara, and S. Sarkarung. 1993. Improved semidwarf rice lines with tolerance to submergence of seedlings. Crop Sci. 33:749-753.
5. Mackill, D.J., W.R. Coffman, and D.P. Garrity. 1996. Rainfed lowland rice improvement Int. Rice Res. Inst., Manila.
6. Mackill, D.J., Z. Zhang, E.D. Redona, and P.M. Colowit. 1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977.
7. Nandi, S., P.K. Subudhi, D. Senadhira, N.L. Manigbas, S. Sen-Mandi, and N. Huang. 1997. Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol. Gen. Genet. 255:1-8.
8. Redoña, E.D., and D.J. Mackill. 1996. Mapping quantitative trait loci for seedling vigor in rice using RFLPs. Theor. Appl. Genet. 92: 395-102.
9. Rutger, J.N., and G.W. Schaeffer. 1989. An environmentally-sensitive genetic male sterile mutant in rice. p. 98. In Agronomy Abstracts. ASA, Madison, WI.
10. Setter, T.L., and E.V. Laureles. 1996. The beneficial effect of reduced elongation growth on submergence tolerance of rice. J. Exp. Bot. 47:1551-1559.
11. Siangliw, M., T. Toojinda, S. Tragoonrung, and A. Vanavichit. 2003. Thai jasmine rice carrying QTLch9 (SubQTL) is submergence tolerant. Ann. Bot. 91:255-261.
12. Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11:1441-1452.
13. Temnykh, S., W.D. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii, and S.R. McCouch. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor. Appl. Genet. 100:697-712.
14. Vergara, B.S., and A. Mazaredo. 1975. Screening for resistance to submergence under greenhouse conditions. p. 67-70. In Proceedings of the International Seminar on Deepwater Rice. August 1974. Bangladesh Rice Res. Inst., Dhaka.
15. Williams, J.F., S.R. Roberts, J.E. Hill, S.C. Scardaci, and G. Tibbits. 1990. Managing water for weed control in rice. Calif. Agric. 44(5):6-10.
16. Xu, K., and D.J. Mackill. 1996. A major locus for submergence tolerance mapped on rice chromosome 9. Mol. Breed. 2:219-224.
17. Xu, K., X. Xu, P.C. Ronald, and D.J. Mackill. 2000. A high-resolution linkage map in the vicinity of the rice submergence tolerance locus Sub1. Mol. Gen. Genet. 263:681-689.
18. Yu, J., S.N. Hu, J. Wang, G.K.S. Wong, S.G. Li, B. Liu, Y.J. Deng, L. Dai, Y. Zhou, X.Q. Zhang, M.L. Cao, J. Liu, J.D. Sun, J.B. Tang, Y.J. Chen, X.B. Huang, W. Lin, C. Ye, W. Tong, L.J. Cong, J.N. Geng, Y.J. Han, L. Li, W. Li, G.Q. Hu, X.G. Huang, W.J. Li, J. Li, Z.W. Liu, J.P. Liu, Q.H. Qi, J.S. Liu, T. Li, X.G. Wang, H. Lu, T.T. Wu, M. Zhu, P.X. Ni, H. Han, W. Dong, X.Y. Ren, X.L. Feng, P. Cui, X.R. Li, H. Wang, X. Xu, W.X. Zhai, Z. Xu, J.S. Zhang, S.J. He, J.G. Zhang, J.C. Xu, K.L. Zhang, X.W. Zheng, J.H. Dong, W.Y. Zeng, L. Tao, J. Ye, J. Tan, X.D. Ren, X.W. Chen, J. He, D.F. Liu, W. Tian, C.G. Tian, H.G. Xia. Q.Y. Bao, G. Li, H. Gao, T. Cao, W.M. Zhao, P. Li, W. Chen, X.D. Wang, Y. Zhang, J.F. Hu, S. Liu, J. Yang, G.Y. Zhang, Y.Q. Xiong, Z.J. Li, L. Mao, CS. Zhou, Z. Zhu, R.S. Chen, B.L. Hao, W.M. Zheng, S.Y. Chen, W. Guo, G.J. Li, S.Q. Liu, M. Tao, L.H. Zhu, L.P. Yuan, and H.M. Yang. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp indica). Science 296:79-92.