Thai jasmine rice carrying QTLch9 (SubQTL) is submergence tolerant

Annals of Botany

Volumn 91, Issue SPEC. ISS. JAN., 2003, Pages 255-261

  Siangliw, M ^a   Toojinda, T ^a   Tragoonrung, S ^a   Vanavichit, A ^a  

^a KASETSART UNIVERSITY   (Thailand)

Author keywords

Back crossing; Graphical genotype; Marker assisted selection; Plant breeding; QTL analysis; Rice (Oryza sativa L.); Submergence tolerance

Indexed keywords

PLANT BREEDING; RICE; SUBMERGENCE; TOLERANCE;

ADAPTATION, PHYSIOLOGICAL; GENETIC MARKERS; GENOTYPE; ORYZA SATIVA; PHENOTYPE; QUANTITATIVE TRAIT LOCI; WATER;

ASIA;

JASMINUM; ORYZA SATIVA;

EID: 0037243018     PISSN: 03057364     EISSN: None     Source Type: Journal    
DOI: 10.1093/aob/mcf123     Document Type: Article

References (24)

1. Adkin SW, Shiraishi T, McComb JA. 1990. Submergence tolerance of rice - a new glasshouse method for the experimental submergence of plants. Physiologia Plantarum 80: 642-646.
2. Akagi H, Yokozeki Y, Inagaki A, Fujimura T. 1996. Microsatellite DNA markers for rice chromosomes. Theoretical and Applied Genetics 93: 1071-1077.
3. Boutin SR, Young ND, Lorenzen LL, Shoemaker RC. 1995. Marker based pedigrees and graphic genotypes generated by supergene software. Crop Science 35: 1703-1707.
4. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR. 1997. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theoretical and Applied Genetics 95: 553-567.
5. Garland S, Lewin L, Blakeney A, Reinke R. 2000. PCR-based molecular markers for the fragrance gene in rice (Oryza sativa. L.). Theoretical and Applied Genetics 101: 364-371.
6. Haque QA, Hille Ris Lambers, D, Tepora NM, dela Cruz QD. 1989. Inheritance of submergence tolerance in rice. Euphytica 41: 247-251.
7. Kamolsukyunyong W, Ruanjaichon V, Siangliw M, Kawasaki S, Sasaki T, Vanavichit A, Tragoonrung S. 2001. Mapping of quantitative trait locus related to submergence tolerance in rice with aid of chromosome walking. DNA Research 8 (4): 163-171.
8. Lanceras JC, Huang Z-L, Naivikul O, Vanavichit A, Ruanjaichon V, Tragoonrung S. 2000. Mapping of genes for cooking and eating qualities in Thai jasmine rice (KDML105). DNA Research 7: 93-101.
9. Mackill DJ, Amante MM, Vergara BS, Sarkarung S. 1993. Improved semidwarf rice lines with tolerance to submergence of seedings. Crop Science 33: 749-753.
10. Mohanty HK, Khush GS. 1985. Diallel analysis of submergence tolerance in rice, Oryza sativa L. Theoretical and Applied Genetics 70: 467-473.
11. Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N. 1997. Mapping QTLs for submergence tolerance in rice by AFLP and selective genotyping. Molecular and General Genetics 255: 1-8.
12. Palada M, Vergara BS. 1972. Environmental effects on the resistance of rice seedlings to complete submergence. Crop Science 12: 209-212.
13. Rogers S.O. and Bendich AJ. 1994. Extraction of total cellular DNA from plants, algae and fungi. Plant Molecular Biology Manual DI, 1-8.
14. Setter TL, Laureles EV. 1996. The beneficial effect of reduced elongation growth on submergence tolerance of rice. Journal of Experimental Botany 47: 1551-1559.
15. Siangliw M, Toojinda T, Tragoonrung S and Vanavichit A. 2002. Mapping genes controlling traits related to submergence tolerance in rice recombinant inbred lines. Rice Genetic IV. Proceedings of the Fourth International Rice Genetics Symposium, 22-27 October 2000, Los Banos, Philippines. New Delhi (India): Science Publishers, Inc. and Los Banos (Philippines): International Rice Research Institute (in press).
16. Sinha MM, Saran S. 1988. Inheritance of submergence tolerance in lowland rice. Oryza 25: 351-354.
17. Suprihatno B, Coffman WR. 1981. Inheritance of submergence tolerance in rice (Oryza sativa L.). SABRAO Journal 13: 98-108.
18. Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho YG, Ishii T, McCouch SR. 2000. Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics 100: 697-712.
19. Toojinda T, Siangliw M, Tragoonrung S, Vanavichit A. 2003. Molecular genetics of submergence tolerance in rice: QTL analysis of key traits. Annals of Botany 91: 243-253.
20. Vanavichit A, Ruanjaichon V, Techayingpaiboon D, Kamolsukyunyong W, Jamparuang M, Jaturapahu T, Nimlek A, Wachana S, Toojinda T, Tragoonrung S. 2001. Sequence rice chromosome 9: platform for understanding structural and functional genomics. Plant and Animal Genome IX. Abstract available from http://www.intl-pag.org/pag/9/abstracts/P01_08.html.
21. Xu K, Mackill DJ. 1996. A major locus for submergence tolerance mapped on rice chromosome 9. Molecular Breeding 2: 219-224.
22. Xu K, Xu X, Ronald PC, Mackill DJ. 2000. A high-resolution linkage map of the vicinity of the rice submergence tolerance locus Subl. Molecular and General Genetics 263: 681-689.
23. Yan J, Zhu J, He C, Benmoussa M, Wu P. 1999. Molecular marker-assisted dissection of genotype X environment interaction for plant type traits in rice (Oryza sativa L.). Crop Science 39: 538-544.
24. Young ND and Tanksley SD. 1989. Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theoretical and Applied Genetics 77: 95-101.