메뉴 건너뛰기




Volumn 291, Issue 6, 2016, Pages 2837-2847

Molecular Basis of filtering carbapenems by porins from βlactam-resistant clinical strains of Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; BACTERIA; BIOLOGICAL MEMBRANES; CHEMOTHERAPY; ELECTRIC FIELDS; ELECTROPHYSIOLOGY; ESCHERICHIA COLI; MOLECULAR DYNAMICS; MOLECULAR ORIENTATION; PERMEATION;

EID: 84958092458     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M115.690156     Document Type: Article
Times cited : (60)

References (43)
  • 1
    • 33847151750 scopus 로고    scopus 로고
    • The antibiotic resistome: The nexus of chemical and genetic diversity
    • Wright, G. D. (2007) The antibiotic resistome: The nexus of chemical and genetic diversity. Nat. Rev. Microbiol. 5, 175-186.
    • (2007) Nat. Rev. Microbiol , vol.5 , pp. 175-186
    • Wright, G.D.1
  • 2
    • 10944272743 scopus 로고    scopus 로고
    • Antibacterial resistance worldwide: Causes, challenges and responses
    • Levy, S. B., and Marshall, B. (2004) Antibacterial resistance worldwide: causes, challenges and responses. Nat. Med. 10, S122-9.
    • (2004) Nat. Med , vol.10 , pp. S122-S129
    • Levy, S.B.1    Marshall, B.2
  • 3
    • 33845903833 scopus 로고    scopus 로고
    • Drugs for bad bugs: Confronting the challenges of antibacterial discovery
    • Payne, D. J., Gwynn, M. N., Holmes, D. J., and Pompliano, D. L. (2007) Drugs for bad bugs: confronting the challenges of antibacterial discovery. Nat. Rev. Drug Discov. 6, 29-40.
    • (2007) Nat. Rev. Drug Discov , vol.6 , pp. 29-40
    • Payne, D.J.1    Gwynn, M.N.2    Holmes, D.J.3    Pompliano, D.L.4
  • 4
    • 84899087499 scopus 로고    scopus 로고
    • Translocation project: How to get good drugs into bad bugs
    • Stavenger, R. A., and Winterhalter, M. (2014) TRANSLOCATION project: how to get good drugs into bad bugs. Sci. Transl. Med. 6, 228ed7.
    • (2014) Sci. Transl. Med , vol.6 , pp. 228ed7
    • Stavenger, R.A.1    Winterhalter, M.2
  • 5
    • 0017263974 scopus 로고
    • Outer membrane of salmonella: Isolation of protein complex that produces transmembrane channels
    • Nakae, T. (1976) Outer membrane of Salmonella: isolation of protein complex that produces transmembrane channels. J. Biol. Chem. 251, 2176-2178.
    • (1976) J. Biol. Chem , vol.251 , pp. 2176-2178
    • Nakae, T.1
  • 6
    • 84956729518 scopus 로고    scopus 로고
    • (ed), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, 10.1002/3527603875
    • Benz, R. (ed) (2004) Bacterial and Eukaryotic Porins, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, 10.1002/3527603875.
    • (2004) Bacterial and Eukaryotic Porins
    • Benz, R.1
  • 7
    • 0347479229 scopus 로고    scopus 로고
    • Molecular basis of bacterial outer membrane permeability revisited
    • Nikaido, H. (2003) Molecular basis of bacterial outer membrane permeability revisited. Microbiol. Mol. Biol. Rev. 67, 593-656.
    • (2003) Microbiol. Mol. Biol. Rev , vol.67 , pp. 593-656
    • Nikaido, H.1
  • 8
    • 0021968133 scopus 로고
    • Diffusion of β-lactam antibiotics through the porin channels of Escherichia coli K-12
    • Yoshimura, F., and Nikaido, H. (1985) Diffusion of β-lactam antibiotics through the porin channels of Escherichia coli K-12. Antimicrob. Agents Chemother. 27, 84-92.
    • (1985) Antimicrob. Agents Chemother , vol.27 , pp. 84-92
    • Yoshimura, F.1    Nikaido, H.2
  • 9
    • 56349139534 scopus 로고    scopus 로고
    • The porin and the permeating antibiotic: A selective diffusion barrier in gram-negative bacteria
    • Pagès, J.-M., James, C. E., and Winterhalter, M. (2008) The porin and the permeating antibiotic: A selective diffusion barrier in Gram-negative bacteria. Nat. Rev. Microbiol. 6, 893-903.
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 893-903
    • Pagès, J.-M.1    James, C.E.2    Winterhalter, M.3
  • 10
    • 84867184096 scopus 로고    scopus 로고
    • Adaptive and mutational resistance: Role of porins and efflux pumps in drug resistance
    • Fernández, L., and Hancock, R. E. (2012) Adaptive and mutational resistance: role of porins and efflux pumps in drug resistance. Clin. Microbiol. Rev. 25, 661-681.
    • (2012) Clin. Microbiol. Rev , vol.25 , pp. 661-681
    • Fernández, L.1    Hancock, R.E.2
  • 12
    • 0034933612 scopus 로고    scopus 로고
    • A new mechanism of antibiotic resistance in enterobacteriaceae induced by a structural modification of the major porin
    • Dé, E., Baslé, A., Jaquinod, M., Saint, N., Malléa, M., Molle, G., and Pagès, J. M. (2001) A new mechanism of antibiotic resistance in Enterobacteriaceae induced by a structural modification of the major porin. Mol. Microbiol. 41, 189-198.
    • (2001) Mol. Microbiol , vol.41 , pp. 189-198
    • Dé, E.1    Baslé, A.2    Jaquinod, M.3    Saint, N.4    Malléa, M.5    Molle, G.6    Pagès, J.M.7
  • 14
    • 0035167241 scopus 로고    scopus 로고
    • Protected environments allow parallel evolution of a bacterial pathogen in a patient subjected to long-term antibiotic therapy
    • Low, A. S., MacKenzie, F. M., Gould, I. M., and Booth, I. R. (2001) Protected environments allow parallel evolution of a bacterial pathogen in a patient subjected to long-term antibiotic therapy. Mol. Microbiol. 42, 619-630.
    • (2001) Mol. Microbiol. , vol.42 , pp. 619-630
    • Low, A.S.1    MacKenzie, F.M.2    Gould, I.M.3    Booth, I.R.4
  • 16
    • 0034929588 scopus 로고    scopus 로고
    • Low-level antibacterial resistance: A gateway to clinical resistance
    • Baquero, F. (2001) Low-level antibacterial resistance: A gateway to clinical resistance. Drug Resist. Updat. 4, 93-105.
    • (2001) Drug Resist., Updat , vol.4 , pp. 93-105
    • Baquero, F.1
  • 18
    • 84907202564 scopus 로고    scopus 로고
    • High salt concentrations increase permeability through ompc channels of Escherichia coli
    • Kojima, S., and Nikaido, H. (2014) High salt concentrations increase permeability through OmpC channels of Escherichia coli. J. Biol. Chem. 289, 26464-26473.
    • (2014) J. Biol. Chem , vol.289 , pp. 26464-26473
    • Kojima, S.1    Nikaido, H.2
  • 19
    • 84859962388 scopus 로고    scopus 로고
    • Antibiotic permeation across the OmpF channel: Modulation of the affinity site in the presence of magnesium
    • Singh, P. R., Ceccarelli, M., Lovelle, M., Winterhalter, M., and Mahendran, K. R. (2012) Antibiotic permeation across the OmpF channel: modulation of the affinity site in the presence of magnesium. J. Phys. Chem. B 116, 4433-4438.
    • (2012) J. Phys. Chem. B , vol.116 , pp. 4433-4438
    • Singh, P.R.1    Ceccarelli, M.2    Lovelle, M.3    Winterhalter, M.4    Mahendran, K.R.5
  • 21
    • 0026785288 scopus 로고
    • Pore-forming activity of ompa protein of Escherichia coli
    • Sugawara, E., and Nikaido, H. (1992) Pore-forming activity of OmpA protein of Escherichia coli. J. Biol. Chem. 267, 2507-2511.
    • (1992) J. Biol. Chem , vol.267 , pp. 2507-2511
    • Sugawara, E.1    Nikaido, H.2
  • 23
    • 0015459562 scopus 로고
    • Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties
    • Montal, M., and Mueller, P. (1972) Formation of bimolecular membranes from lipid monolayers and a study of their electrical properties. Proc. Natl. Acad. Sci. U.S.A. 69, 3561-3566.
    • (1972) Proc. Natl. Acad. Sci. U.S.A. , vol.69 , pp. 3561-3566
    • Montal, M.1    Mueller, P.2
  • 24
    • 0024341335 scopus 로고
    • Decreased outer membrane permeability in imipenem-resistant mutants of pseudomonas aeruginosa
    • Trias, J., Dufresne, J., Levesque, R. C., and Nikaido, H. (1989) Decreased outer membrane permeability in imipenem-resistant mutants of Pseudomonas aeruginosa. Antimicrob. Agents Chemother. 33, 1202-1206.
    • (1989) Antimicrob. Agents Chemother , vol.33 , pp. 1202-1206
    • Trias, J.1    Dufresne, J.2    Levesque, R.C.3    Nikaido, H.4
  • 27
    • 67650099787 scopus 로고    scopus 로고
    • Acemd: Accelerating biomolecular dynamics in the microsecond time scale
    • Harvey, M. J., Giupponi, G., and Fabritiis, G. D. (2009) ACEMD: Accelerating biomolecular dynamics in the microsecond time scale. J. Chem. Theory Comput. 5, 1632-1639.
    • (2009) J Chem. Theory Comput , vol.5 , pp. 1632-1639
    • Harvey, M.J.1    Giupponi, G.2    Fabritiis, G.D.3
  • 28
    • 79960007037 scopus 로고    scopus 로고
    • Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations. Proc
    • Buch, I., Giorgino, T., and De Fabritiis, G. (2011) Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations. Proc. Natl. Acad. Sci. U.S.A. 108, 10184-10189.
    • (2011) Natl. Acad. Sci. U.S.A. , vol.108 , pp. 10184-10189
    • Buch, I.1    Giorgino, T.2    De Fabritiis, G.3
  • 32
    • 3042524904 scopus 로고
    • A wellbehaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
    • Bayly, C. I., Cieplak, P., Cornell, W., and Kollman, P. A. (1993) A wellbehaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model. J. Phys. Chem. 97, 10269-10280.
    • (1993) J. Phys. Chem , vol.97 , pp. 10269-10280
    • Bayly, C.I.1    Cieplak, P.2    Cornell, W.3    Kollman, P.A.4
  • 35
    • 38349091489 scopus 로고    scopus 로고
    • Well-tempered metadynamics: A smoothly converging and tunable free-energy method
    • Barducci, A., Bussi, G., and Parrinello, M. (2008) Well-tempered metadynamics: A smoothly converging and tunable free-energy method. Phys. Rev. Lett. 100, 020603.
    • (2008) Phys. Rev. Lett , vol.100 , pp. 020603
    • Barducci, A.1    Bussi, G.2    Parrinello, M.3
  • 37
    • 33644769684 scopus 로고    scopus 로고
    • Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics
    • Raiteri, P., Laio, A., Gervasio, F. L., Micheletti, C., and Parrinello, M. (2006) Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics. J. Phys. Chem. B 110, 3533-3539.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 3533-3539
    • Raiteri, P.1    Laio, A.2    Gervasio, F.L.3    Micheletti, C.4    Parrinello, M.5
  • 38
    • 0023472905 scopus 로고
    • Mechanism of sugar transport through the sugar-specific lamb channel of Escherichia coli outer membrane
    • Benz, R., Schmid, A., and Vos-Scheperkeuter, G. H. (1987) Mechanism of sugar transport through the sugar-specific LamB channel of Escherichia coli outer membrane. J. Membr. Biol. 100, 21-29.
    • (1987) J. Membr. Biol , vol.100 , pp. 21-29
    • Benz, R.1    Schmid, A.2    Vos-Scheperkeuter, G.H.3
  • 40
    • 77954911184 scopus 로고    scopus 로고
    • Molecular simulations reveal the mechanism and the determinants for ampicillin translocation through OmpF
    • Kumar, A., Hajjar, E., Ruggerone, P., and Ceccarelli, M. (2010) Molecular simulations reveal the mechanism and the determinants for ampicillin translocation through OmpF. J. Phys. Chem. B 114, 9608-9616.
    • (2010) J. Phys. Chem. B , vol.114 , pp. 9608-9616
    • Kumar, A.1    Hajjar, E.2    Ruggerone, P.3    Ceccarelli, M.4
  • 42
    • 84872600203 scopus 로고    scopus 로고
    • The translocation kinetics of antibiotics through porin ompc: Insights from structure-based solvation mapping using watermap
    • Tran, Q.-T., Williams, S., Farid, R., Erdemli, G., and Pearlstein, R. (2013) The translocation kinetics of antibiotics through porin OmpC: insights from structure-based solvation mapping using WaterMap. Proteins 81, 291-299.
    • (2013) Proteins , vol.81 , pp. 291-299
    • Tran, Q.-T.1    Williams, S.2    Farid, R.3    Erdemli, G.4    Pearlstein, R.5
  • 43
    • 84937577985 scopus 로고    scopus 로고
    • Structure-kinetic relationship of carbapenem antibacterials permeating through E. Coli ompc porin
    • Tran, Q.-T., Pearlstein, R. A., Williams, S., Reilly, J., Krucker, T., and Erdemli, G. (2014) Structure-kinetic relationship of carbapenem antibacterials permeating through E. coli OmpC porin. Proteins 82, 2998 -3012.
    • (2014) Proteins , vol.82 , pp. 2998-3012
    • Tran, Q.-T.1    Pearlstein, R.A.2    Williams, S.3    Reilly, J.4    Krucker, T.5    Erdemli, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.