-
1
-
-
84878282421
-
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
-
Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, Zhu Y, Kim A, Nery JR, Urich MA, Kuan S, Yen CA, Klugman S, Yu P, Suknuntha K, Propson NE, Chen H, Edsall LE, Wagner U, Li Y, Ye Z, Kulkarni A, Xuan Z, Chung WY, Chi NC, Antosiewicz-Bourget JE, Slukvin I, Stewart R, Zhang MQ, Wang W, Thomson JA, Ecker JR, Ren B. 2013. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153:1134-1148. http://dx.doi.org/10.1016/j.cell.2013.04.022.
-
(2013)
Cell
, vol.153
, pp. 1134-1148
-
-
Xie, W.1
Schultz, M.D.2
Lister, R.3
Hou, Z.4
Rajagopal, N.5
Ray, P.6
Whitaker, J.W.7
Tian, S.8
Hawkins, R.D.9
Leung, D.10
Yang, H.11
Wang, T.12
Lee, A.Y.13
Swanson, S.A.14
Zhang, J.15
Zhu, Y.16
Kim, A.17
Nery, J.R.18
Urich, M.A.19
Kuan, S.20
Yen, C.A.21
Klugman, S.22
Yu, P.23
Suknuntha, K.24
Propson, N.E.25
Chen, H.26
Edsall, L.E.27
Wagner, U.28
Li, Y.29
Ye, Z.30
Kulkarni, A.31
Xuan, Z.32
Chung, W.Y.33
Chi, N.C.34
Antosiewicz-Bourget, J.E.35
Slukvin, I.36
Stewart, R.37
Zhang, M.Q.38
Wang, W.39
Thomson, J.A.40
Ecker, J.R.41
Ren, B.42
more..
-
2
-
-
84878292277
-
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
-
Gifford CA, Ziller MJ, Gu H, Trapnell C, Donaghey J, Tsankov A, Shalek AK, Kelley DR, Shishkin AA, Issner R, Zhang X, Coyne M, Fostel JL, Holmes L, Meldrim J, Guttman M, Epstein C, Park H, Kohlbacher O, Rinn J, Gnirke A, Lander ES, Bernstein BE, Meissner A. 2013. Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell 153:1149-1163. http://dx.doi.org/10.1016/j.cell.2013.04.037.
-
(2013)
Cell
, vol.153
, pp. 1149-1163
-
-
Gifford, C.A.1
Ziller, M.J.2
Gu, H.3
Trapnell, C.4
Donaghey, J.5
Tsankov, A.6
Shalek, A.K.7
Kelley, D.R.8
Shishkin, A.A.9
Issner, R.10
Zhang, X.11
Coyne, M.12
Fostel, J.L.13
Holmes, L.14
Meldrim, J.15
Guttman, M.16
Epstein, C.17
Park, H.18
Kohlbacher, O.19
Rinn, J.20
Gnirke, A.21
Lander, E.S.22
Bernstein, B.E.23
Meissner, A.24
more..
-
3
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. 2009. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324:930-935. http://dx.doi.org/10.1126/science.1170116.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
4
-
-
84892763878
-
Reversing DNA methylation: mechanisms, genomics, and biological functions
-
Wu H, Zhang Y. 2014. Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156:45-68. http://dx.doi.org/10.1016/j.cell.2013.12.019.
-
(2014)
Cell
, vol.156
, pp. 45-68
-
-
Wu, H.1
Zhang, Y.2
-
5
-
-
84921989642
-
Connections between TET proteins and aberrant DNAmodification in cancer
-
Huang Y, Rao A. 2014. Connections between TET proteins and aberrant DNAmodification in cancer. Trends Genet 30:464-474. http://dx.doi.org/10.1016/j.tig.2014.07.005.
-
(2014)
Trends Genet
, vol.30
, pp. 464-474
-
-
Huang, Y.1
Rao, A.2
-
6
-
-
84939211505
-
5-Hydroxymethylcytosine marks promoters in colon that resistDNAhypermethylation in cancer
-
Uribe-Lewis S, Stark R, Carroll T, Dunning MJ, Bachman M, Ito Y, Stojic L, Halim S, Vowler SL, Lynch AG, Delatte B, de Bony EJ, Colin L, Defrance M, Krueger F, Silva AL, Ten Hoopen R, Ibrahim AE, Fuks F, Murrell A. 2015. 5-Hydroxymethylcytosine marks promoters in colon that resistDNAhypermethylation in cancer. Genome Biol 16:69. http://dx.doi.org/10.1186/s13059-015-0605-5.
-
(2015)
Genome Biol
, vol.16
, pp. 69
-
-
Uribe-Lewis, S.1
Stark, R.2
Carroll, T.3
Dunning, M.J.4
Bachman, M.5
Ito, Y.6
Stojic, L.7
Halim, S.8
Vowler, S.L.9
Lynch, A.G.10
Delatte, B.11
De Bony, E.J.12
Colin, L.13
Defrance, M.14
Krueger, F.15
Silva, A.L.16
Ten Hoopen, R.17
Ibrahim, A.E.18
Fuks, F.19
Murrell, A.20
more..
-
7
-
-
84898482006
-
Loss of Tet enzymes compromises proper differentiation of embryonic stem cells
-
Dawlaty MM, Breiling A, Le T, Barrasa MI, Raddatz G, Gao Q, Powell BE, Cheng AW, Faull KF, Lyko F, Jaenisch R. 2014. Loss of Tet enzymes compromises proper differentiation of embryonic stem cells. Dev Cell 29:102-111. http://dx.doi.org/10.1016/j.devcel.2014.03.003.
-
(2014)
Dev Cell
, vol.29
, pp. 102-111
-
-
Dawlaty, M.M.1
Breiling, A.2
Le, T.3
Barrasa, M.I.4
Raddatz, G.5
Gao, Q.6
Powell, B.E.7
Cheng, A.W.8
Faull, K.F.9
Lyko, F.10
Jaenisch, R.11
-
8
-
-
84873707539
-
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
-
Dawlaty MM, Breiling A, Le T, Raddatz G, Barrasa MI, Cheng AW, Gao Q, Powell BE, Li Z, Xu M, Faull KF, Lyko F, Jaenisch R. 2013. Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development. Dev Cell 24:310-323. http://dx.doi.org/10.1016/j.devcel.2012.12.015.
-
(2013)
Dev Cell
, vol.24
, pp. 310-323
-
-
Dawlaty, M.M.1
Breiling, A.2
Le, T.3
Raddatz, G.4
Barrasa, M.I.5
Cheng, A.W.6
Gao, Q.7
Powell, B.E.8
Li, Z.9
Xu, M.10
Faull, K.F.11
Lyko, F.12
Jaenisch, R.13
-
9
-
-
84890963403
-
Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency
-
Hackett JA, Dietmann S, Murakami K, Down TA, Leitch HG, Surani MA. 2013. Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency. Stem Cell Reports 1:518-531. http://dx.doi.org/10.1016/j.stemcr.2013.11.010.
-
(2013)
Stem Cell Reports
, vol.1
, pp. 518-531
-
-
Hackett, J.A.1
Dietmann, S.2
Murakami, K.3
Down, T.A.4
Leitch, H.G.5
Surani, M.A.6
-
10
-
-
84866936331
-
Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers
-
Sérandour AA, Avner S, Oger F, Bizot M, Percevault F, Lucchetti-Miganeh C, Palierne G, Gheeraert C, Barloy-Hubler F, Péron CL, Madigou T, Durand E, Froguel P, Staels B, Lefebvre P, Métivier R, Eeckhoute J, Salbert G. 2012. Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers. Nucleic Acids Res 40:8255-8265. http://dx.doi.org/10.1093/nar/gks595.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8255-8265
-
-
Sérandour, A.A.1
Avner, S.2
Oger, F.3
Bizot, M.4
Percevault, F.5
Lucchetti-Miganeh, C.6
Palierne, G.7
Gheeraert, C.8
Barloy-Hubler, F.9
Péron, C.L.10
Madigou, T.11
Durand, E.12
Froguel, P.13
Staels, B.14
Lefebvre, P.15
Métivier, R.16
Eeckhoute, J.17
Salbert, G.18
-
11
-
-
84907507329
-
Role of Tet proteins in enhancer activity and telomere elongation
-
Lu F, Liu Y, Jiang L, Yamaguchi S, Zhang Y. 2014. Role of Tet proteins in enhancer activity and telomere elongation. Genes Dev 28:2103-2119. http://dx.doi.org/10.1101/gad.248005.114.
-
(2014)
Genes Dev
, vol.28
, pp. 2103-2119
-
-
Lu, F.1
Liu, Y.2
Jiang, L.3
Yamaguchi, S.4
Zhang, Y.5
-
12
-
-
84908204470
-
5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation
-
Hon GC, Song CX, Du T, Jin F, Selvaraj S, Lee AY, Yen CA, Ye Z, Mao SQ, Wang BA, Kuan S, Edsall LE, Zhao BS, Xu GL, He C, Ren B. 2014. 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation. Mol Cell 56:286-297. http://dx.doi.org/10.1016/j.molcel.2014.08.026.
-
(2014)
Mol Cell
, vol.56
, pp. 286-297
-
-
Hon, G.C.1
Song, C.X.2
Du, T.3
Jin, F.4
Selvaraj, S.5
Lee, A.Y.6
Yen, C.A.7
Ye, Z.8
Mao, S.Q.9
Wang, B.A.10
Kuan, S.11
Edsall, L.E.12
Zhao, B.S.13
Xu, G.L.14
He, C.15
Ren, B.16
-
13
-
-
84922621952
-
Function and information content of DNA methylation
-
Schübeler D. 2015. Function and information content of DNA methylation. Nature 517:321-326. http://dx.doi.org/10.1038/nature14192.
-
(2015)
Nature
, vol.517
, pp. 321-326
-
-
Schübeler, D.1
-
14
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadlr MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, van Nimwegen E, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schübeler D. 2011. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480:490-495. http://dx.doi.org/10.1038/nature10716.
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadlr, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Schöler, A.6
Van Nimwegen, E.7
Wirbelauer, C.8
Oakeley, E.J.9
Gaidatzis, D.10
Tiwari, V.K.11
Schübeler, D.12
-
15
-
-
84891372425
-
Large conserved domains of lowDNAmethylation maintained by Dnmt3a
-
Jeong M, Sun D, Luo M, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim SB, Yang L, Ko M, Chen R, Göttgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, Li W, Goodell MA. 2014. Large conserved domains of lowDNAmethylation maintained by Dnmt3a. Nat Genet 46:17-23. http://dx.doi.org/10.1038/ng.2836.
-
(2014)
Nat Genet
, vol.46
, pp. 17-23
-
-
Jeong, M.1
Sun, D.2
Luo, M.3
Huang, Y.4
Challen, G.A.5
Rodriguez, B.6
Zhang, X.7
Chavez, L.8
Wang, H.9
Hannah, R.10
Kim, S.B.11
Yang, L.12
Ko, M.13
Chen, R.14
Göttgens, B.15
Lee, J.S.16
Gunaratne, P.17
Godley, L.A.18
Darlington, G.J.19
Rao, A.20
Li, W.21
Goodell, M.A.22
more..
-
16
-
-
84901811688
-
Playing TETris with DNA modifications
-
Delatte B, Deplus R, Fuks F. 2014. Playing TETris with DNA modifications. EMBO J 33:1198-1211. http://dx.doi.org/10.15252/embj.201488290.
-
(2014)
EMBO J
, vol.33
, pp. 1198-1211
-
-
Delatte, B.1
Deplus, R.2
Fuks, F.3
-
17
-
-
84919829070
-
DNA cytosine methylation and hydroxymethylation at the borders
-
Ehrlich M, Ehrlich KC. 2014. DNA cytosine methylation and hydroxymethylation at the borders. Epigenomics 6:563-566. http://dx.doi.org/10.2217/epi.14.48.
-
(2014)
Epigenomics
, vol.6
, pp. 563-566
-
-
Ehrlich, M.1
Ehrlich, K.C.2
-
18
-
-
84866074106
-
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
-
Tuorto F, Liebers R, Musch T, Schaefer M, Hofmann S, Kellner S, Frye M, Helm M, Stoecklin G, Lyko F. 2012. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol 19:900-905. http://dx.doi.org/10.1038/nsmb.2357.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 900-905
-
-
Tuorto, F.1
Liebers, R.2
Musch, T.3
Schaefer, M.4
Hofmann, S.5
Kellner, S.6
Frye, M.7
Helm, M.8
Stoecklin, G.9
Lyko, F.10
-
19
-
-
84872049642
-
Dnmt3a protects active chromosome domains against cancer-associated hypomethylation
-
Raddatz G, Gao Q, Bender S, Jaenisch R, Lyko F. 2012. Dnmt3a protects active chromosome domains against cancer-associated hypomethylation. PLoS Genet 8:e1003146. http://dx.doi.org/10.1371/journal.pgen.1003146.
-
(2012)
PLoS Genet
, vol.8
-
-
Raddatz, G.1
Gao, Q.2
Bender, S.3
Jaenisch, R.4
Lyko, F.5
-
20
-
-
68949141599
-
BSMAP: whole genome bisulfite sequence MAPping program
-
Xi Y, Li W. 2009. BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics 10:232. http://dx.doi.org/10.1186/1471-2105-10-232.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 232
-
-
Xi, Y.1
Li, W.2
-
21
-
-
84857707318
-
ChromHMM: automating chromatin-state discovery and characterization
-
Ernst J, Kellis M. 2012. ChromHMM: automating chromatin-state discovery and characterization. Nat Methods 9:215-216. http://dx.doi.org/10.1038/nmeth.1906.
-
(2012)
Nat Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
22
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. 2007. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448:553-560. http://dx.doi.org/10.1038/nature06008.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
23
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B. 2012. A map of the cis-regulatory sequences in the mouse genome. Nature 488:116-120. http://dx.doi.org/10.1038/nature11243.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
24
-
-
84899049695
-
MOABS: model based analysis of bisulfite sequencing data
-
Sun D, Xi Y, Rodriguez B, Park HJ, Tong P, Meong M, Goodell MA, Li W. 2014. MOABS: model based analysis of bisulfite sequencing data. Genome Biol 15:R38. http://dx.doi.org/10.1186/gb-2014-15-2-r38.
-
(2014)
Genome Biol
, vol.15
, pp. R38
-
-
Sun, D.1
Xi, Y.2
Rodriguez, B.3
Park, H.J.4
Tong, P.5
Meong, M.6
Goodell, M.A.7
Li, W.8
-
25
-
-
84864311315
-
Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster
-
Bocker MT, Tuorto F, Raddatz G, Musch T, Yang FC, Xu M, Lyko F, Breiling A. 2012. Hydroxylation of 5-methylcytosine by TET2 maintains the active state of the mammalian HOXA cluster. Nat Commun 3:818. http://dx.doi.org/10.1038/ncomms1826.
-
(2012)
Nat Commun
, vol.3
, pp. 818
-
-
Bocker, M.T.1
Tuorto, F.2
Raddatz, G.3
Musch, T.4
Yang, F.C.5
Xu, M.6
Lyko, F.7
Breiling, A.8
-
26
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111. http://dx.doi.org/10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
27
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11:R106. http://dx.doi.org/10.1186/gb-2010-11-10-r106.
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
28
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell C, Hendrickson DG, Sauvageau M, Goff L, Rinn JL, Pachter L. 2013. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol 31:46-53. http://dx.doi.org/10.1038/nbt.2450.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
Hendrickson, D.G.2
Sauvageau, M.3
Goff, L.4
Rinn, J.L.5
Pachter, L.6
-
29
-
-
84880671988
-
Regionally specific and genome-wide analyses conclusively demonstrate the absence of CpG methylation in human mitochondrial DNA
-
Hong EE, Okitsu CY, Smith AD, Hsieh CL. 2013. Regionally specific and genome-wide analyses conclusively demonstrate the absence of CpG methylation in human mitochondrial DNA. Mol Cell Biol 33:2683-2690. http://dx.doi.org/10.1128/MCB.00220-13.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 2683-2690
-
-
Hong, E.E.1
Okitsu, C.Y.2
Smith, A.D.3
Hsieh, C.L.4
-
30
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. 2008. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40:897-903. http://dx.doi.org/10.1038/ng.154.
-
(2008)
Nat Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
31
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
Zentner GE, Tesar PJ, Scacheri PC. 2011. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21:1273-1283. http://dx.doi.org/10.1101/gr.122382.111.
-
(2011)
Genome Res
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
32
-
-
80155208160
-
Prediction of RNA polymerase II recruitment, elongation and stalling from histone modification data
-
Chen Y, Jørgensen M, Kolde R, Zhao X, Parker B, Valen E, Wen J, Sandelin A. 2011. Prediction of RNA polymerase II recruitment, elongation and stalling from histone modification data. BMC Genomics 12:544. http://dx.doi.org/10.1186/1471-2164-12-544.
-
(2011)
BMC Genomics
, vol.12
, pp. 544
-
-
Chen, Y.1
Jørgensen, M.2
Kolde, R.3
Zhao, X.4
Parker, B.5
Valen, E.6
Wen, J.7
Sandelin, A.8
-
33
-
-
84893373754
-
Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells
-
Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda- Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. 2014. Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proc Natl Acad Sci U S A 111:1361-1366. http://dx.doi.org/10.1073/pnas.1322921111.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 1361-1366
-
-
Huang, Y.1
Chavez, L.2
Chang, X.3
Wang, X.4
Pastor, W.A.5
Kang, J.6
Zepeda-Martínez, J.A.7
Pape, U.J.8
Jacobsen, S.E.9
Peters, B.10
Rao, A.11
-
34
-
-
33845325476
-
Adipocyte differentiation from the inside out
-
Rosen ED, MacDougald OA. 2006. Adipocyte differentiation from the inside out. Nat Rev Mol Cell Biol 7:885-896. http://dx.doi.org/10.1038/nrm2066.
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 885-896
-
-
Rosen, E.D.1
MacDougald, O.A.2
-
35
-
-
84899587273
-
Foxc1 is a critical regulator of haematopoietic stem/progenitor cell niche formation
-
Omatsu Y, Seike M, Sugiyama T, Kume T, Nagasawa T. 2014. Foxc1 is a critical regulator of haematopoietic stem/progenitor cell niche formation. Nature 508:536-540. http://dx.doi.org/10.1038/nature13071.
-
(2014)
Nature
, vol.508
, pp. 536-540
-
-
Omatsu, Y.1
Seike, M.2
Sugiyama, T.3
Kume, T.4
Nagasawa, T.5
-
36
-
-
5644278855
-
The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation
-
Davis KE, Moldes M, Farmer SR. 2004. The forkhead transcription factor FoxC2 inhibits white adipocyte differentiation. J Biol Chem 279:42453- 42461. http://dx.doi.org/10.1074/jbc.M402197200.
-
(2004)
J Biol Chem
, vol.279
, pp. 42453-42461
-
-
Davis, K.E.1
Moldes, M.2
Farmer, S.R.3
-
37
-
-
70450198396
-
Epithelialmesenchymal transitions in development and disease
-
Thiery JP, Acloque H, Huang RY, Nieto MA. 2009. Epithelialmesenchymal transitions in development and disease. Cell 139:871-890. http://dx.doi.org/10.1016/j.cell.2009.11.007.
-
(2009)
Cell
, vol.139
, pp. 871-890
-
-
Thiery, J.P.1
Acloque, H.2
Huang, R.Y.3
Nieto, M.A.4
-
38
-
-
77149144805
-
Mesenchymal-epithelial transition in epithelial response to injury: the role of Foxc2
-
Hader C, Marlier A, Cantley L. 2010. Mesenchymal-epithelial transition in epithelial response to injury: the role of Foxc2. Oncogene 29:1031- 1040. http://dx.doi.org/10.1038/onc.2009.397.
-
(2010)
Oncogene
, vol.29
, pp. 1031-1040
-
-
Hader, C.1
Marlier, A.2
Cantley, L.3
-
39
-
-
54549116936
-
A bioinformatics approach for identifying candidate transcriptional regulators of mesenchyme-toepithelium transitions in mouse embryos
-
Bard JB, Lam MS, Aitken S. 2008. A bioinformatics approach for identifying candidate transcriptional regulators of mesenchyme-toepithelium transitions in mouse embryos. Dev Dyn 237:2748-2754. http://dx.doi.org/10.1002/dvdy.21652.
-
(2008)
Dev Dyn
, vol.237
, pp. 2748-2754
-
-
Bard, J.B.1
Lam, M.S.2
Aitken, S.3
-
40
-
-
84897989106
-
Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming
-
Hu X, Zhang L, Mao SQ, Li Z, Chen J, Zhang RR, Wu HP, Gao J, Guo F, Liu W, Xu GF, Dai HQ, Shi YG, Li X, Hu B, Tang F, Pei D, Xu GL. 2014. Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming. Cell Stem Cell 14:512-522. http://dx.doi.org/10.1016/j.stem.2014.01.001.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 512-522
-
-
Hu, X.1
Zhang, L.2
Mao, S.Q.3
Li, Z.4
Chen, J.5
Zhang, R.R.6
Wu, H.P.7
Gao, J.8
Guo, F.9
Liu, W.10
Xu, G.F.11
Dai, H.Q.12
Shi, Y.G.13
Li, X.14
Hu, B.15
Tang, F.16
Pei, D.17
Xu, G.L.18
-
41
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
Williams K, Christensen J, Pedersen MT, Johansen JV, Cloos PA, Rappsilber J, Helin K. 2011. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature 473:343-348. http://dx.doi.org/10.1038/nature10066.
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.5
Rappsilber, J.6
Helin, K.7
-
42
-
-
84965190662
-
TET1 regulates hypoxia-induced epithelialmesenchymal transition by acting as a co-activator
-
Tsai YP, Chen HF, Chen SY, Cheng WC, Wang HW, Shen ZJ, Song C, Teng SC, He C, Wu KJ. 2014. TET1 regulates hypoxia-induced epithelialmesenchymal transition by acting as a co-activator. Genome Biol 15:513. http://dx.doi.org/10.1186/s13059-014-0513-0.
-
(2014)
Genome Biol
, vol.15
, pp. 513
-
-
Tsai, Y.P.1
Chen, H.F.2
Chen, S.Y.3
Cheng, W.C.4
Wang, H.W.5
Shen, Z.J.6
Song, C.7
Teng, S.C.8
He, C.9
Wu, K.J.10
-
43
-
-
84903182472
-
TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
-
Jin C, Lu Y, Jelinek J, Liang S, Estecio MR, Barton MC, Issa JP. 2014. TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells. Nucleic Acids Res 42:6956-6971. http://dx.doi.org/10.1093/nar/gku372.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 6956-6971
-
-
Jin, C.1
Lu, Y.2
Jelinek, J.3
Liang, S.4
Estecio, M.R.5
Barton, M.C.6
Issa, J.P.7
-
44
-
-
84903145963
-
Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates
-
Nakamura R, Tsukahara T, Qu W, Ichikawa K, Otsuka T, Ogoshi K, Saito TL, Matsushima K, Sugano S, Hashimoto S, Suzuki Y, Morishita S, Takeda H. 2014. Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates. Development 141:2568-2580. http://dx.doi.org/10.1242/dev.108548.
-
(2014)
Development
, vol.141
, pp. 2568-2580
-
-
Nakamura, R.1
Tsukahara, T.2
Qu, W.3
Ichikawa, K.4
Otsuka, T.5
Ogoshi, K.6
Saito, T.L.7
Matsushima, K.8
Sugano, S.9
Hashimoto, S.10
Suzuki, Y.11
Morishita, S.12
Takeda, H.13
-
45
-
-
79954457998
-
Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells
-
Wu H, D'Alessio AC, Ito S, Wang Z, Cui K, Zhao K, Sun YE, Zhang Y. 2011. Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells. Genes Dev 25:679-684. http://dx.doi.org/10.1101/gad.2036011.
-
(2011)
Genes Dev
, vol.25
, pp. 679-684
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Wang, Z.4
Cui, K.5
Zhao, K.6
Sun, Y.E.7
Zhang, Y.8
|