-
1
-
-
0030218078
-
DNA elements responsive to auxin
-
COI: 1:CAS:528:DyaK28XlslyntL0%3D, PID: 8760338
-
Abel S, Ballas N, Wong LM, Theologis A (1996) DNA elements responsive to auxin. Bioessays 18:647–654. doi:10.1002/bies.950180808
-
(1996)
Bioessays
, vol.18
, pp. 647-654
-
-
Abel, S.1
Ballas, N.2
Wong, L.M.3
Theologis, A.4
-
2
-
-
0030140041
-
Early genes and auxin action
-
COI: 1:CAS:528:DyaK28XivFektL4%3D, PID: 8685277
-
Abel S, Theologis A (1996) Early genes and auxin action. Plant Physiol 111:9–17. doi:10.1104/Pp.111.1.9
-
(1996)
Plant Physiol
, vol.111
, pp. 9-17
-
-
Abel, S.1
Theologis, A.2
-
3
-
-
67849111913
-
Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice
-
COI: 1:CAS:528:DC%2BD1MXls1yhtbk%3D, PID: 19193962
-
Attia KA, Abdelkhalik AF, Ammar MH, Wei C, Yang J, Lightfoot DA, El-Sayed WM, El-Shemy HA (2009) Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice. Curr Issues Mol Biol 11(Suppl 1):i29–34
-
(2009)
Curr Issues Mol Biol
, vol.11
, pp. 29-34
-
-
Attia, K.A.1
Abdelkhalik, A.F.2
Ammar, M.H.3
Wei, C.4
Yang, J.5
Lightfoot, D.A.6
El-Sayed, W.M.7
El-Shemy, H.A.8
-
4
-
-
40749117240
-
A genomic and expression compendium of the expanded PEBP gene family from maize
-
COI: 1:CAS:528:DC%2BD1cXjtFCmsb8%3D, PID: 17993543
-
Danilevskaya ON, Meng X, Hou Z, Ananiev EV, Simmons CR (2008) A genomic and expression compendium of the expanded PEBP gene family from maize. Plant Physiol 146:250–264. doi:10.1104/pp. 107.109538
-
(2008)
Plant Physiol
, vol.146
, pp. 250-264
-
-
Danilevskaya, O.N.1
Meng, X.2
Hou, Z.3
Ananiev, E.V.4
Simmons, C.R.5
-
5
-
-
2642542593
-
Auxin signaling and regulated protein degradation
-
COI: 1:CAS:528:DC%2BD2cXksVemur0%3D, PID: 15165562
-
Dharmasiri N, Estelle M (2004) Auxin signaling and regulated protein degradation. Trends Plant Sci 9:302–308. doi:10.1016/j.tplants.2004.04.003
-
(2004)
Trends Plant Sci
, vol.9
, pp. 302-308
-
-
Dharmasiri, N.1
Estelle, M.2
-
6
-
-
80055082271
-
Accelerated profile HMM searches
-
COI: 1:CAS:528:DC%2BC3MXhsVCku7rL, PID: 22039361
-
Eddy SR (2011) Accelerated profile HMM searches. PLoS Comput Biol 7:e1002195. doi:10.1371/journal.pcbi.1002195
-
(2011)
PLoS Comput Biol
, vol.7
, pp. 1002195
-
-
Eddy, S.R.1
-
7
-
-
27744526218
-
AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana
-
COI: 1:CAS:528:DC%2BD2MXht1OgurfJ, PID: 16176952
-
Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, Reed JW (2005) AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132:4563–4574. doi:10.1242/dev.02012
-
(2005)
Development
, vol.132
, pp. 4563-4574
-
-
Ellis, C.M.1
Nagpal, P.2
Young, J.C.3
Hagen, G.4
Guilfoyle, T.J.5
Reed, J.W.6
-
8
-
-
84871824918
-
Evolution of the ARF gene family in land plants: old domains, new tricks
-
COI: 1:CAS:528:DC%2BC38XhvV2gtrvM, PID: 22977118
-
Finet C, Berne-Dedieu A, Scutt CP, Marletaz F (2013) Evolution of the ARF gene family in land plants: old domains, new tricks. Mol Biol Evol 30:45–56. doi:10.1093/molbev/mss220
-
(2013)
Mol Biol Evol
, vol.30
, pp. 45-56
-
-
Finet, C.1
Berne-Dedieu, A.2
Scutt, C.P.3
Marletaz, F.4
-
9
-
-
33750010136
-
PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation
-
COI: 1:CAS:528:DC%2BD28Xht1ahsLnI
-
Fukaki H, Taniguchi N, Tasaka M (2006) PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation. Plant J Cell Mol Biol 48:380–389. doi:10.1111/j.1365-313X.2006.02882.x
-
(2006)
Plant J Cell Mol Biol
, vol.48
, pp. 380-389
-
-
Fukaki, H.1
Taniguchi, N.2
Tasaka, M.3
-
10
-
-
33747486352
-
AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis
-
COI: 1:CAS:528:DC%2BD28Xos1Kjt7Y%3D, PID: 16829592
-
Goetz M, Vivian-Smith A, Johnson SD, Koltunow AM (2006) AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell 18:1873–1886. doi:10.1105/tpc.105.037192
-
(2006)
Plant Cell
, vol.18
, pp. 1873-1886
-
-
Goetz, M.1
Vivian-Smith, A.2
Johnson, S.D.3
Koltunow, A.M.4
-
11
-
-
0036187351
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
-
COI: 1:CAS:528:DC%2BD38XitFSnsL4%3D, PID: 11861885
-
Gu Z, Cavalcanti A, Chen FC, Bouman P, Li WH (2002) Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Mol Biol Evol 19:256–262
-
(2002)
Mol Biol Evol
, vol.19
, pp. 256-262
-
-
Gu, Z.1
Cavalcanti, A.2
Chen, F.C.3
Bouman, P.4
Li, W.H.5
-
12
-
-
0032186404
-
How does auxin turn on genes?
-
COI: 1:CAS:528:DyaK1cXmslyqtr0%3D, PID: 9765520
-
Guilfoyle T, Hagen G, Ulmasov T, Murfett J (1998) How does auxin turn on genes? Plant Physiol 118:341–347
-
(1998)
Plant Physiol
, vol.118
, pp. 341-347
-
-
Guilfoyle, T.1
Hagen, G.2
Ulmasov, T.3
Murfett, J.4
-
13
-
-
0035696536
-
Auxin response factors
-
COI: 1:CAS:528:DC%2BD38XjtVCnuw%3D%3D
-
Guilfoyle TJ, Hagen G (2001) Auxin response factors. J Plant Growth Regul 20:281–291. doi:10.1007/s003440010026
-
(2001)
J Plant Growth Regul
, vol.20
, pp. 281-291
-
-
Guilfoyle, T.J.1
Hagen, G.2
-
14
-
-
34848909529
-
Auxin response factors
-
COI: 1:CAS:528:DC%2BD2sXhtFekurvE, PID: 17900969
-
Guilfoyle TJ, Hagen G (2007) Auxin response factors. Curr Opin Plant Biol 10:453–460. doi:10.1016/j.pbi.2007.08.014
-
(2007)
Curr Opin Plant Biol
, vol.10
, pp. 453-460
-
-
Guilfoyle, T.J.1
Hagen, G.2
-
15
-
-
84885143956
-
The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress
-
Ha CV, Le DT, Nishiyama R, Watanabe Y, Sulieman S, Tran UT, Mochida K, Dong NV, Yamaguchi-Shinozaki K, Shinozaki K, Tran LS (2013) The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress. DNA Res Int J Rapid Publ Rep Genes Genomes 20:511–524. doi:10.1093/dnares/dst027
-
(2013)
DNA Res Int J Rapid Publ Rep Genes Genomes
, vol.20
, pp. 511-524
-
-
Ha, C.V.1
Le, D.T.2
Nishiyama, R.3
Watanabe, Y.4
Sulieman, S.5
Tran, U.T.6
Mochida, K.7
Dong, N.V.8
Yamaguchi-Shinozaki, K.9
Shinozaki, K.10
Tran, L.S.11
-
16
-
-
84876533617
-
Building phylogenetic trees from molecular data with MEGA
-
COI: 1:CAS:528:DC%2BC3sXlvFWgsb8%3D, PID: 23486614
-
Hall BG (2013) Building phylogenetic trees from molecular data with MEGA. Mol Biol Evol 30:1229–1235. doi:10.1093/molbev/mst012
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1229-1235
-
-
Hall, B.G.1
-
17
-
-
57749085421
-
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
-
COI: 1:CAS:528:DC%2BD1cXht1GmtLjN, PID: 18715958
-
Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 148:993–1003. doi:10.1104/pp. 108.122457
-
(2008)
Plant Physiol
, vol.148
, pp. 993-1003
-
-
Hanada, K.1
Zou, C.2
Lehti-Shiu, M.D.3
Shinozaki, K.4
Shiu, S.H.5
-
18
-
-
0032473570
-
The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development
-
COI: 1:CAS:528:DyaK1cXitFOqsb8%3D, PID: 9482737
-
Hardtke CS, Berleth T (1998) The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J 17:1405–1411. doi:10.1093/emboj/17.5.1405
-
(1998)
EMBO J
, vol.17
, pp. 1405-1411
-
-
Hardtke, C.S.1
Berleth, T.2
-
19
-
-
0034078213
-
The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue
-
COI: 1:CAS:528:DC%2BD3cXjvFyhu74%3D, PID: 10810148
-
Harper RM, Stowe-Evans EL, Luesse DR, Muto H, Tatematsu K, Watahiki MK, Yamamoto K, Liscum E (2000) The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell 12:757–770
-
(2000)
Plant Cell
, vol.12
, pp. 757-770
-
-
Harper, R.M.1
Stowe-Evans, E.L.2
Luesse, D.R.3
Muto, H.4
Tatematsu, K.5
Watahiki, M.K.6
Yamamoto, K.7
Liscum, E.8
-
20
-
-
65549124481
-
Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice
-
COI: 1:CAS:528:DC%2BD1MXmslaqsrY%3D, PID: 19490115
-
Jain M, Khurana JP (2009) Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. FEBS J 276:3148–3162. doi:10.1111/j.1742-4658.2009.07033.x
-
(2009)
FEBS J
, vol.276
, pp. 3148-3162
-
-
Jain, M.1
Khurana, J.P.2
-
21
-
-
15744376749
-
Plant development: auxin in loops
-
COI: 1:CAS:528:DC%2BD2MXis1Kmtr0%3D
-
Kepinski S, Leyser O (2005) Plant development: auxin in loops. Curr Biol CB 15:R208–210. doi:10.1016/j.cub.2005.03.012
-
(2005)
Curr Biol CB
, vol.15
, pp. 208-210
-
-
Kepinski, S.1
Leyser, O.2
-
22
-
-
79952983991
-
Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development
-
COI: 1:CAS:528:DC%2BC3MXit1Gqs7Y%3D
-
Kumar R, Tyagi AK, Sharma AK (2011) Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol Genet Genom MGG 285:245–260. doi:10.1007/s00438-011-0602-7
-
(2011)
Mol Genet Genom MGG
, vol.285
, pp. 245-260
-
-
Kumar, R.1
Tyagi, A.K.2
Sharma, A.K.3
-
23
-
-
45949109669
-
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
-
COI: 1:CAS:528:DC%2BD1cXpt1artrg%3D, PID: 18417537
-
Kumar S, Nei M, Dudley J, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9:299–306. doi:10.1093/bib/bbn017
-
(2008)
Brief Bioinform
, vol.9
, pp. 299-306
-
-
Kumar, S.1
Nei, M.2
Dudley, J.3
Tamura, K.4
-
24
-
-
4344648019
-
Convergence of signaling pathways in the control of differential cell growth in Arabidopsis
-
COI: 1:CAS:528:DC%2BD2cXnsVKntrs%3D, PID: 15296716
-
Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR (2004) Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev Cell 7:193–204. doi:10.1016/j.devcel.2004.07.002
-
(2004)
Dev Cell
, vol.7
, pp. 193-204
-
-
Li, H.1
Johnson, P.2
Stepanova, A.3
Alonso, J.M.4
Ecker, J.R.5
-
25
-
-
33646912733
-
A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis
-
COI: 1:CAS:528:DC%2BD28Xislyhu7c%3D, PID: 16461383
-
Li J, Dai X, Zhao Y (2006) A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol 140:899–908. doi:10.1104/pp. 105.070987
-
(2006)
Plant Physiol
, vol.140
, pp. 899-908
-
-
Li, J.1
Dai, X.2
Zhao, Y.3
-
26
-
-
77949385519
-
Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity
-
COI: 1:CAS:528:DC%2BC3cXjt1Kgu78%3D, PID: 20164142
-
Lim PO, Lee IC, Kim J, Kim HJ, Ryu JS, Woo HR, Nam HG (2010) Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. J Exp Bot 61:1419–1430. doi:10.1093/jxb/erq010
-
(2010)
J Exp Bot
, vol.61
, pp. 1419-1430
-
-
Lim, P.O.1
Lee, I.C.2
Kim, J.3
Kim, H.J.4
Ryu, J.S.5
Woo, H.R.6
Nam, H.G.7
-
27
-
-
77953663537
-
A draft physical map of a D-genome cotton species (Gossypium raimondii)
-
PID: 20569427
-
Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, Epps E, Golser W, Grover C, Ingles J, Karunakaran S, Kudrna D, Olive J, Tabassum N, Um E, Wissotski M, Yu Y, Zuccolo A, ur Rahman M, Peterson DG, Wing RA, Wendel JF, Paterson AH (2010) A draft physical map of a D-genome cotton species (Gossypium raimondii). BMC Genomics 11:395. doi:10.1186/1471-2164-11-395
-
(2010)
BMC Genomics
, vol.11
, pp. 395
-
-
Lin, L.1
Pierce, G.J.2
Bowers, J.E.3
Estill, J.C.4
Compton, R.O.5
Rainville, L.K.6
Kim, C.7
Lemke, C.8
Rong, J.9
Tang, H.10
Wang, X.11
Braidotti, M.12
Chen, A.H.13
Chicola, K.14
Collura, K.15
Epps, E.16
Golser, W.17
Grover, C.18
Ingles, J.19
Karunakaran, S.20
Kudrna, D.21
Olive, J.22
Tabassum, N.23
Um, E.24
Wissotski, M.25
Yu, Y.26
Zuccolo, A.27
ur Rahman, M.28
Peterson, D.G.29
Wing, R.A.30
Wendel, J.F.31
Paterson, A.H.32
more..
-
28
-
-
84904618108
-
Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes
-
PID: 25047803
-
Lin Y, Cheng Y, Jin J, Jin X, Jiang H, Yan H, Cheng B (2014) Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes. PLoS One 9:e102825. doi:10.1371/journal.pone.0102825
-
(2014)
PLoS One
, vol.9
, pp. 102825
-
-
Lin, Y.1
Cheng, Y.2
Jin, J.3
Jin, X.4
Jiang, H.5
Yan, H.6
Cheng, B.7
-
29
-
-
84943193205
-
Genome-wide identification and expression analysis of TCP transcription factors in Gossypium raimondii
-
COI: 1:CAS:528:DC%2BC2MXksVyqtLo%3D, PID: 25322260
-
Ma J, Wang Q, Sun R, Xie F, Jones DC, Zhang B (2014) Genome-wide identification and expression analysis of TCP transcription factors in Gossypium raimondii. Sci Rep 4:6645. doi:10.1038/srep06645
-
(2014)
Sci Rep
, vol.4
, pp. 6645
-
-
Ma, J.1
Wang, Q.2
Sun, R.3
Xie, F.4
Jones, D.C.5
Zhang, B.6
-
30
-
-
84867399099
-
Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution
-
COI: 1:CAS:528:DC%2BC38XhsVSntrbE
-
Mun JH, Yu HJ, Shin JY, Oh M, Hwang HJ, Chung H (2012) Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution. Mol Genet Genom MGG 287:765–784. doi:10.1007/s00438-012-0718-4
-
(2012)
Mol Genet Genom MGG
, vol.287
, pp. 765-784
-
-
Mun, J.H.1
Yu, H.J.2
Shin, J.Y.3
Oh, M.4
Hwang, H.J.5
Chung, H.6
-
31
-
-
27144474564
-
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
-
COI: 1:CAS:528:DC%2BD2MXhtFCgs7%2FP, PID: 16107481
-
Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW (2005) Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132:4107–4118. doi:10.1242/dev.01955
-
(2005)
Development
, vol.132
, pp. 4107-4118
-
-
Nagpal, P.1
Ellis, C.M.2
Weber, H.3
Ploense, S.E.4
Barkawi, L.S.5
Guilfoyle, T.J.6
Hagen, G.7
Alonso, J.M.8
Cohen, J.D.9
Farmer, E.E.10
Ecker, J.R.11
Reed, J.W.12
-
32
-
-
0033792717
-
Auxin and ETTIN in Arabidopsis gynoecium morphogenesis
-
COI: 1:CAS:528:DC%2BD3cXnslGrtrc%3D, PID: 10952886
-
Nemhauser JL, Feldman LJ, Zambryski PC (2000) Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127:3877–3888
-
(2000)
Development
, vol.127
, pp. 3877-3888
-
-
Nemhauser, J.L.1
Feldman, L.J.2
Zambryski, P.C.3
-
33
-
-
20044394137
-
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19
-
COI: 1:CAS:528:DC%2BD2MXhsFKqsro%3D, PID: 15659631
-
Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A (2005) Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell 17:444–463. doi:10.1105/tpc.104.028316
-
(2005)
Plant Cell
, vol.17
, pp. 444-463
-
-
Okushima, Y.1
Overvoorde, P.J.2
Arima, K.3
Alonso, J.M.4
Chan, A.5
Chang, C.6
Ecker, J.R.7
Hughes, B.8
Lui, A.9
Nguyen, D.10
Onodera, C.11
Quach, H.12
Smith, A.13
Yu, G.14
Theologis, A.15
-
34
-
-
76249125348
-
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
-
PID: 19889219
-
Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ (2009) Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biol 10:R122. doi:10.1186/gb-2009-10-11-r122
-
(2009)
Genome Biol
, vol.10
, pp. 122
-
-
Pang, M.1
Woodward, A.W.2
Agarwal, V.3
Guan, X.4
Ha, M.5
Ramachandran, V.6
Chen, X.7
Triplett, B.A.8
Stelly, D.M.9
Chen, Z.J.10
-
35
-
-
29544441788
-
Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity
-
COI: 1:CAS:528:DC%2BD2MXht1OgtLvN, PID: 16199616
-
Pekker I, Alvarez JP, Eshed Y (2005) Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity. Plant Cell 17:2899–2910. doi:10.1105/tpc.105.034876
-
(2005)
Plant Cell
, vol.17
, pp. 2899-2910
-
-
Pekker, I.1
Alvarez, J.P.2
Eshed, Y.3
-
36
-
-
84858077472
-
The Pfam protein families database
-
COI: 1:CAS:528:DC%2BC3MXhs12hurvK, PID: 22127870
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD (2012) The Pfam protein families database. Nucleic Acids Res 40:D290–301. doi:10.1093/nar/gkr1065
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 290-301
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
Heger, A.11
Holm, L.12
Sonnhammer, E.L.13
Eddy, S.R.14
Bateman, A.15
Finn, R.D.16
-
37
-
-
33747894577
-
TM4 microarray software suite
-
COI: 1:CAS:528:DC%2BD2sXmtV2lt7Y%3D, PID: 16939790
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J (2006) TM4 microarray software suite. Methods Enzymol 411:134–193. doi:10.1016/S0076-6879(06)11009-5
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
Li, J.7
Thiagarajan, M.8
White, J.A.9
Quackenbush, J.10
-
38
-
-
52049109027
-
High-throughput real-time PCR
-
COI: 1:CAS:528:DC%2BD1cXlslagsLk%3D, PID: 18695961
-
Schmittgen TD, Lee EJ, Jiang J (2008) High-throughput real-time PCR. Methods Mol Biol 429:89–98. doi:10.1007/978-1-60327-040-3_7
-
(2008)
Methods Mol Biol
, vol.429
, pp. 89-98
-
-
Schmittgen, T.D.1
Lee, E.J.2
Jiang, J.3
-
39
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
COI: 1:CAS:528:DC%2BC3cXntVClsQ%3D%3D, PID: 20075913
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178–183. doi:10.1038/nature08670
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
Xu, D.11
Hellsten, U.12
May, G.D.13
Yu, Y.14
Sakurai, T.15
Umezawa, T.16
Bhattacharyya, M.K.17
Sandhu, D.18
Valliyodan, B.19
Lindquist, E.20
Peto, M.21
Grant, D.22
Shu, S.23
Goodstein, D.24
Barry, K.25
Futrell-Griggs, M.26
Abernathy, B.27
Du, J.28
Tian, Z.29
Zhu, L.30
Gill, N.31
Joshi, T.32
Libault, M.33
Sethuraman, A.34
Zhang, X.C.35
Shinozaki, K.36
Nguyen, H.T.37
Wing, R.A.38
Cregan, P.39
Specht, J.40
Grimwood, J.41
Rokhsar, D.42
Stacey, G.43
Shoemaker, R.C.44
Jackson, S.A.45
more..
-
40
-
-
0030660640
-
ETTIN patterns the Arabidopsis floral meristem and reproductive organs
-
COI: 1:CAS:528:DyaK1cXht1yqsg%3D%3D, PID: 9409666
-
Sessions A, Nemhauser JL, McColl A, Roe JL, Feldmann KA, Zambryski PC (1997) ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development 124:4481–4491
-
(1997)
Development
, vol.124
, pp. 4481-4491
-
-
Sessions, A.1
Nemhauser, J.L.2
McColl, A.3
Roe, J.L.4
Feldmann, K.A.5
Zambryski, P.C.6
-
41
-
-
80052240175
-
Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa
-
COI: 1:CAS:528:DC%2BC3MXhtlSktLvO, PID: 21767343
-
Shao Y, Wei G, Wang L, Dong Q, Zhao Y, Chen B, Xiang Y (2011) Genome-wide analysis of BURP domain-containing genes in Populus trichocarpa. J Integr Plant Biol 53:743–755. doi:10.1111/j.1744-7909.2011.01068.x
-
(2011)
J Integr Plant Biol
, vol.53
, pp. 743-755
-
-
Shao, Y.1
Wei, G.2
Wang, L.3
Dong, Q.4
Zhao, Y.5
Chen, B.6
Xiang, Y.7
-
42
-
-
77956562704
-
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.)
-
COI: 1:CAS:528:DC%2BC3cXhtFGhtrvK, PID: 20693412
-
Shen C, Wang S, Bai Y, Wu Y, Zhang S, Chen M, Guilfoyle TJ, Wu P, Qi Y (2010) Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). J Exp Bot 61:3971–3981. doi:10.1093/jxb/erq208
-
(2010)
J Exp Bot
, vol.61
, pp. 3971-3981
-
-
Shen, C.1
Wang, S.2
Bai, Y.3
Wu, Y.4
Zhang, S.5
Chen, M.6
Guilfoyle, T.J.7
Wu, P.8
Qi, Y.9
-
43
-
-
59449105283
-
Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments
-
COI: 1:CAS:528:DC%2BD1MXhtFSmsrg%3D, PID: 19034497
-
Song Y, Wang L, Xiong L (2009) Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 229:577–591. doi:10.1007/s00425-008-0853-7
-
(2009)
Planta
, vol.229
, pp. 577-591
-
-
Song, Y.1
Wang, L.2
Xiong, L.3
-
44
-
-
0032253807
-
NPH4, a conditional modulator of auxin-dependent differential growth responses in Arabidopsis
-
COI: 1:CAS:528:DyaK1MXhtV0%3D, PID: 9847100
-
Stowe-Evans EL, Harper RM, Motchoulski AV, Liscum E (1998) NPH4, a conditional modulator of auxin-dependent differential growth responses in Arabidopsis. Plant Physiol 118:1265–1275
-
(1998)
Plant Physiol
, vol.118
, pp. 1265-1275
-
-
Stowe-Evans, E.L.1
Harper, R.M.2
Motchoulski, A.V.3
Liscum, E.4
-
45
-
-
84904440049
-
Differentiated expression of microRNAs may regulate genotype-dependent traits in cotton
-
COI: 1:CAS:528:DC%2BC2cXhtV2qtrbE, PID: 24971502
-
Sun R, Wang Q, Ma J, He Q, Zhang B (2014) Differentiated expression of microRNAs may regulate genotype-dependent traits in cotton. Gene 547:233–238. doi:10.1016/j.gene.2014.06.052
-
(2014)
Gene
, vol.547
, pp. 233-238
-
-
Sun, R.1
Wang, Q.2
Ma, J.3
He, Q.4
Zhang, B.5
-
46
-
-
7044228135
-
Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition
-
COI: 1:CAS:528:DC%2BD2cXhtVShurjF
-
Tian CE, Muto H, Higuchi K, Matamura T, Tatematsu K, Koshiba T, Yamamoto KT (2004) Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J Cell Mol Biol 40:333–343. doi:10.1111/j.1365-313X.2004.02220.x
-
(2004)
Plant J Cell Mol Biol
, vol.40
, pp. 333-343
-
-
Tian, C.E.1
Muto, H.2
Higuchi, K.3
Matamura, T.4
Tatematsu, K.5
Koshiba, T.6
Yamamoto, K.T.7
-
47
-
-
0037329943
-
The roles of auxin response factor domains in auxin-responsive transcription
-
COI: 1:CAS:528:DC%2BD3sXhtlOmur0%3D, PID: 12566590
-
Tiwari SB, Hagen G, Guilfoyle T (2003) The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15:533–543
-
(2003)
Plant Cell
, vol.15
, pp. 533-543
-
-
Tiwari, S.B.1
Hagen, G.2
Guilfoyle, T.3
-
48
-
-
0035542787
-
AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin
-
COI: 1:CAS:528:DC%2BD38XktlOgtg%3D%3D, PID: 11752389
-
Tiwari SB, Wang XJ, Hagen G, Guilfoyle TJ (2001) AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin. Plant Cell 13:2809–2822
-
(2001)
Plant Cell
, vol.13
, pp. 2809-2822
-
-
Tiwari, S.B.1
Wang, X.J.2
Hagen, G.3
Guilfoyle, T.J.4
-
49
-
-
0030796237
-
ARF1, a transcription factor that binds to auxin response elements
-
COI: 1:CAS:528:DyaK2sXksVCnu7k%3D, PID: 9188533
-
Ulmasov T, Hagen G, Guilfoyle TJ (1997a) ARF1, a transcription factor that binds to auxin response elements. Science 276:1865–1868
-
(1997)
Science
, vol.276
, pp. 1865-1868
-
-
Ulmasov, T.1
Hagen, G.2
Guilfoyle, T.J.3
-
50
-
-
0033180359
-
Dimerization and DNA binding of auxin response factors
-
COI: 1:CAS:528:DyaK1MXmt1Olt74%3D
-
Ulmasov T, Hagen G, Guilfoyle TJ (1999) Dimerization and DNA binding of auxin response factors. Plant J Cell Mol Biol 19:309–319
-
(1999)
Plant J Cell Mol Biol
, vol.19
, pp. 309-319
-
-
Ulmasov, T.1
Hagen, G.2
Guilfoyle, T.J.3
-
51
-
-
0031277708
-
Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements
-
COI: 1:CAS:528:DyaK2sXnsl2mtrc%3D, PID: 9401121
-
Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997b) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9:1963–1971. doi:10.1105/tpc.9.11.1963
-
(1997)
Plant Cell
, vol.9
, pp. 1963-1971
-
-
Ulmasov, T.1
Murfett, J.2
Hagen, G.3
Guilfoyle, T.J.4
-
52
-
-
34247102281
-
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)
-
COI: 1:CAS:528:DC%2BD2sXksVelur8%3D, PID: 17408882
-
Wang D, Pei K, Fu Y, Sun Z, Li S, Liu H, Tang K, Han B, Tao Y (2007) Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene 394:13–24. doi:10.1016/j.gene.2007.01.006
-
(2007)
Gene
, vol.394
, pp. 13-24
-
-
Wang, D.1
Pei, K.2
Fu, Y.3
Sun, Z.4
Li, S.5
Liu, H.6
Tang, K.7
Han, B.8
Tao, Y.9
-
53
-
-
27744596243
-
Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
-
COI: 1:CAS:528:DC%2BD2MXpsFGjs7c%3D, PID: 16006581
-
Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, Chen XY (2005a) Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17:2204–2216. doi:10.1105/tpc.105.033076
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
Xue, H.W.5
Chen, X.Y.6
-
54
-
-
84866941666
-
The draft genome of a diploid cotton Gossypium raimondii
-
COI: 1:CAS:528:DC%2BC38Xht1Ght7bM, PID: 22922876
-
Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, Zou C, Li Q, Yuan Y, Lu C, Wei H, Gou C, Zheng Z, Yin Y, Zhang X, Liu K, Wang B, Song C, Shi N, Kohel RJ, Percy RG, Yu JZ, Zhu YX, Wang J, Yu S (2012a) The draft genome of a diploid cotton Gossypium raimondii. Nat Genet 44:1098–1103. doi:10.1038/ng.2371
-
(2012)
Nat Genet
, vol.44
, pp. 1098-1103
-
-
Wang, K.1
Wang, Z.2
Li, F.3
Ye, W.4
Wang, J.5
Song, G.6
Yue, Z.7
Cong, L.8
Shang, H.9
Zhu, S.10
Zou, C.11
Li, Q.12
Yuan, Y.13
Lu, C.14
Wei, H.15
Gou, C.16
Zheng, Z.17
Yin, Y.18
Zhang, X.19
Liu, K.20
Wang, B.21
Song, C.22
Shi, N.23
Kohel, R.J.24
Percy, R.G.25
Yu, J.Z.26
Zhu, Y.X.27
Wang, J.28
Yu, S.29
more..
-
55
-
-
78650524304
-
Auxin-related gene families in abiotic stress response in Sorghum bicolor
-
COI: 1:CAS:528:DC%2BC3cXhtlKrsbrF, PID: 20499123
-
Wang S, Bai Y, Shen C, Wu Y, Zhang S, Jiang D, Guilfoyle TJ, Chen M, Qi Y (2010) Auxin-related gene families in abiotic stress response in Sorghum bicolor. Funct Integr Genomics 10:533–546. doi:10.1007/s10142-010-0174-3
-
(2010)
Funct Integr Genomics
, vol.10
, pp. 533-546
-
-
Wang, S.1
Bai, Y.2
Shen, C.3
Wu, Y.4
Zhang, S.5
Jiang, D.6
Guilfoyle, T.J.7
Chen, M.8
Qi, Y.9
-
56
-
-
30344461068
-
AUXIN RESPONSE FACTOR7 restores the expression of auxin-responsive genes in mutant Arabidopsis leaf mesophyll protoplasts
-
COI: 1:CAS:528:DC%2BD2MXnt1yjtL0%3D, PID: 15923351
-
Wang S, Tiwari SB, Hagen G, Guilfoyle TJ (2005b) AUXIN RESPONSE FACTOR7 restores the expression of auxin-responsive genes in mutant Arabidopsis leaf mesophyll protoplasts. Plant Cell 17:1979–1993. doi:10.1105/tpc.105.031096
-
(2005)
Plant Cell
, vol.17
, pp. 1979-1993
-
-
Wang, S.1
Tiwari, S.B.2
Hagen, G.3
Guilfoyle, T.J.4
-
57
-
-
84863850809
-
Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes
-
COI: 1:CAS:528:DC%2BC38XhvVWmtrw%3D, PID: 21667107
-
Wang Y, Deng D, Shi Y, Miao N, Bian Y, Yin Z (2012b) Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes. Mol Biol Rep 39:2401–2415. doi:10.1007/s11033-011-0991-z
-
(2012)
Mol Biol Rep
, vol.39
, pp. 2401-2415
-
-
Wang, Y.1
Deng, D.2
Shi, Y.3
Miao, N.4
Bian, Y.5
Yin, Z.6
-
58
-
-
0031251762
-
The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf
-
COI: 1:CAS:528:DyaK2sXntFSmurY%3D, PID: 9342863
-
Watahiki MK, Yamamoto KT (1997) The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf. Plant Physiol 115:419–426
-
(1997)
Plant Physiol
, vol.115
, pp. 419-426
-
-
Watahiki, M.K.1
Yamamoto, K.T.2
-
59
-
-
19544366287
-
Auxin: regulation, action, and interaction
-
COI: 1:CAS:528:DC%2BD2MXjvFOrsbs%3D, PID: 15749753
-
Woodward AW, Bartel B (2005) Auxin: regulation, action, and interaction. Ann Bot 95:707–735. doi:10.1093/aob/mci083
-
(2005)
Ann Bot
, vol.95
, pp. 707-735
-
-
Woodward, A.W.1
Bartel, B.2
-
60
-
-
80053933347
-
Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum
-
Wu J, Wang F, Cheng L, Kong F, Peng Z, Liu S, Yu X, Lu G (2011) Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Plant Cell Rep 30:2059–2073. doi:10.1007/s00299-011-1113-z
-
(2011)
Plant Cell Rep
, vol.30
, pp. 2059-2073
-
-
Wu, J.1
Wang, F.2
Cheng, L.3
Kong, F.4
Peng, Z.5
Liu, S.6
Yu, X.7
Lu, G.8
-
61
-
-
84926419766
-
-
Small RNA sequencing identifies miRNA roles in ovule and fibre development, Plant Biotechnol J
-
Xie FL, Jones DC, Wang QL, Sun RR, Zhang BH (2015) Small RNA sequencing identifies miRNA roles in ovule and fibre development. Plant Biotechnol J. doi:10.1111/pbi.12296
-
(2015)
Zhang BH
-
-
Xie, F.L.1
Jones, D.C.2
Wang, Q.L.3
Sun, R.R.4
-
62
-
-
79953725148
-
Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize
-
COI: 1:CAS:528:DC%2BC3MXltV2gsro%3D, PID: 21473768
-
Xing H, Pudake RN, Guo G, Xing G, Hu Z, Zhang Y, Sun Q, Ni Z (2011) Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics 12:178. doi:10.1186/1471-2164-12-178
-
(2011)
BMC Genomics
, vol.12
, pp. 178
-
-
Xing, H.1
Pudake, R.N.2
Guo, G.3
Xing, G.4
Hu, Z.5
Zhang, Y.6
Sun, Q.7
Ni, Z.8
-
63
-
-
70349325795
-
Expression of microRNAs in cotton
-
COI: 1:CAS:528:DC%2BD1MXns1CnsLc%3D, PID: 19288227
-
Zhang B, Pan X (2009) Expression of microRNAs in cotton. Mol Biotechnol 42:269–274. doi:10.1007/s12033-009-9163-y
-
(2009)
Mol Biotechnol
, vol.42
, pp. 269-274
-
-
Zhang, B.1
Pan, X.2
-
64
-
-
3042575125
-
Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes
-
COI: 1:CAS:528:DC%2BD2cXksVSgurY%3D
-
Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics MGG 271:402–415. doi:10.1007/s00438-004-0990-z
-
(2004)
Mol Genet Genomics MGG
, vol.271
, pp. 402-415
-
-
Zhou, T.1
Wang, Y.2
Chen, J.Q.3
Araki, H.4
Jing, Z.5
Jiang, K.6
Shen, J.7
Tian, D.8
|