The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue

Plant Cell

Volumn 12, Issue 5, 2000, Pages 757-770

  Harper, Renée M ^a   Stowe Evans, Emily L ^a   Luesse, Darron R ^a,c   Muto, Hideki ^b   Tatematsu, Kiyoshi ^b   Watahiki, Masaaki K ^b,d   Yamamoto, Kotaro ^b   Liscum, Emmanuel ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b HOKKAIDO UNIVERSITY   (Japan)

^c INDIANA UNIVERSITY   (United States)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0034078213     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.12.5.757     Document Type: Article

References (75)

1. Abel, S., and Theologis, A. (1996). Early genes and auxin action. Plant Physiol. 111, 9-17.
2. Alonso, J.M., Hirayama, T., Roman, G., Nourizadeh, S., and Ecker, J.R. (1999). EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284, 2148-2152.
3. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Millar, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
4. Ausubel, F., Brent, R., Kingston, R.E., Moore, D.D, Seidman, J.G., Smith, J.A, and Struhl, K., eds (1995). Short Protocols in Molecular Biology. (New York: John Wiley).
5. Bartel, B., and Fink, G.R. (1994). Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 91, 6649-6653.
6. Bell, C., and Ecker, J.R. (1994). Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19, 137-144.
7. Bell, C.J., and Maher, E.P. (1990). Mutants of Arabidopsis thaliana with abnormal gravitropic response. Mol. Gen. Genet. 220, 289-293.
8. Berleth, T., and Jürgens, G. (1993). The role of the MONOPTEROS gene in organizing the basal body region of the Arabidopsis embryo. Development 118, 575-587.
9. Bleecker, A.B., Estelle, M.A., Somerville, C.R., and Kende, H. (1988). Insensitivity to ethylene conferred by a dominant mutation in Arabidopsis thaliana. Science 241, 1086-1089.
10. Burg, S.P., and Burg, E.A. (1966). The interaction between auxin and ethylene and its role in plant growth. Proc. Natl. Acad. Sci. USA 55, 262-269.
11. Burg, S.P., and Burg, E.A. (1967). Inhibition of polar auxin transport by ethylene. Plant Physiol. 42, 1224-1228.
12. Chen, R., Hilson, P., Sedbrook, J., Rosen, E., Caspar, T., and Masson, P.H. (1998). The Arabidopsis thaliana AGRAVITROPIC 1 gene encodes a component of the polar-auxin-transport efflux carrier. Proc. Natl. Acad. Sci. USA 95, 15112-15117.
13. Cho, R.J., et al. (1999). Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nat. Genet. 23, 203-207.
14. Christie, J.M., Reymond, P., Powell, G.K., Bernasconi, P., Raibekas, A.A., Liscum, E., and Briggs, W.R. (1998). NPH1 has the properties of a blue light photoreceptor for phototropism. Science 282, 1698-1701.
15. Clack, T., Mathews, S., and Sharrock, R.A. (1994). The phytochrome apoprotein family in Arabidopsis is encoded by five genes: The sequence and expression of PHYD and PHYE. Plant Mol. Biol. 25, 413-427.
16. Cosgrove, D.J. (1999). Enzymes and other agents that enhance cell wall extensibility. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50, 391-417.
17. Creusot, F., et al. (1995). The CIC library: A large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J. 8, 763-770.
18. Darwin, C., and Darwin, F. (1896). The Power of Movement in Plants. (New York: D. Appleton and Co.).
19. Davies, P.J. (1987). Plant Hormones and Their Role in Plant Growth and Development. (Boston: Martinus Nijhoff).
20. del Pozo, J.C., and Estelle, M. (1999). Function of the ubiquitin-proteosome pathway in auxin response. Trends Plant Sci. 4, 107-112.
21. Edwards, K., Johnstone, C., and Thompson, C. (1991). A simple and rapid method for the preparation of plant genomic DNA for PCR analysis. Nucleic Acids Res. 19, 1349.
22. Evola, S.V., Burr, F.A., and Burr, B. (1986). The suitability of restriction fragment length polymorphisms as genetic markers in maize. Theor. Appl. Genet. 71, 765-771.
23. Gil, P., Yang, L., Orbivic, V., Verkamp, E., Poff, K.L., and Green, P.J. (1994). Characterization of the auxin inducible SAUR-AC1 gene for use as a molecular genetic tool in Arabidopsis. Plant Physiol. 104, 777-784.
24. Guilfoyle, T.J. (1998). Aux/IAA proteins and auxin signal transduction. Trends Plant Sci. 3, 205-207.
25. Guilfoyle, T.J., Ulmasov, T., and Hagen, G. (1998a). The ARF family of transcription factors and their role in plant hormone-responsive transcription. Cell. Mol. Life Sci. 54, 619-627.
26. Guilfoyle, T.J., Hagen, G., Ulmasov, T., and Murfett, J. (1998b). How does auxin turn on genes? Plant Physiol. 118, 341-347.
27. Guzman, P., and Ecker, J.R. (1990). Exploiting the triple response to identify ethylene-related mutants. Plant Cell 2, 513-523.
28. Hardtke, C.S., and Berleth, T. (1998). The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17, 1405-1411.
29. Hou, Y., von Arnim, A.G., and Deng, X.W. (1993). A new class of Arabidopsis constitutive photomorphogenic genes involved in regulation of cotyledon development. Plant Cell 5, 329-339.
30. Hutchison, K.W., Singer, P.B., Mclnnis, S., Diaz-Sala, C., and Greenwood, M.S. (1999). Expansins are conserved in conifers and expressed in hypocotyls in response to exogenous auxin. Plant Physiol. 120, 827-831.
31. Kaufman, P.B., Wu, L.-L., Brock, T.G., and Kim, D. (1995). Hormones and orientation of growth. In Plant Hormones, P.J. Davies, ed (Dordrecht, The Netherlands: Kluwer Academic Publishers), pp. 547-571.
32. Key, J.L. (1969). Hormones and nucleic acid metabolism. Annu. Rev. Plant Physiol. 20, 449-474.
33. Kim, J., Harter, K., and Theologis, A. (1997). Protein-protein interactions among the Aux/IAA proteins. Proc. Natl. Acad. Sci. USA 94, 11786-11791.
34. Lee, J.S., Chang, W.-K., and Evans, M.L. (1990). Effects of ethylene on the kinetics of curvature and auxin redistribution in gravistimulated roots of Zea mays. Plant Physiol. 94, 1770-1775.
35. Lehman, A., Black, R., and Ecker, J.R. (1996). HOOKLESS1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl. Cell 85, 183-194.
36. Leyser, H.M.O., Pickett, F.B., Dharmasiri, S., and Estelle, M. (1996). Mutations in the AXR3 gene of Arabidopsis result in altered auxin response including ectopic expression from the SAUR-AC1 promoter. Plant J. 10, 403-413.
37. Lieberman, M., and Knegt, E. (1977). Influence of ethylene on indole-3-acetic acid concentration in etiolated pea epicotyl tissue. Plant Physiol. 60, 475-477.
38. Lincoln, C., Britton, J.H., and Estelle, M. (1990). Growth and development of the axr1 mutants of Arabidopsis. Plant Cell 2, 1071-1080.
39. Liscum, E. (1999). Amplified fragment length polymorphism: Studies on plant development. In PCR Applications: Protocols and Functional Genomics, M.A. Innis, D.H. Gelfand, and J.J. Sninsky, eds (San Diego, CA: Academic Press), pp. 505-519.
40. Liscum, E., and Briggs, W.R. (1995). Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli. Plant Cell 7, 473-485.
41. Liscum, E., and Briggs, W.R. (1996). Mutations of Arabidopsis in potential transduction and response components of the phototropic signaling pathway. Plant Physiol. 112, 291-296.
42. Liscum, E., and Hangarter, R.P. (1993). Genetic evidence that the red-absorbing form of phytochrome B modulates gravitropism in Arabidopsis thaliana. Plant Physiol. 103, 15-19.
43. Liu, Y.-G., Mitsukawa, N., Vazquez-Tello, A., and Whittier, R.F. (1995). Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking. Plant J. 7, 351-358.
44. Liu, Y.-G., Shirano, Y., Fukaki, H., Yanai, Y., Tasaka, M., Tabata, S., and Shibata, D. (1999). Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning. Proc. Natl. Acad. Sci. USA 96, 6535-6540.
45. Lomax, T.L., Muday, G.K., and Rubery, P.H. (1995). Auxin transport. In Plant Hormones, P.J. Davies, ed (Dordrecht, The Netherlands: Kluwer Academic Publishers), pp. 509-530.
46. Luschnig, C., Gaxiola, R.A, Grisafi, P., and Fink, G.R. (1998). EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana. Genes Dev. 12, 2175-2187.
47. Madlung, A., Behringer, F.J., and Lomax, T.L. (1999). Ethylene plays multiple nonprimary roles in modulating the gravitropic response in tomato. Plant Physiol. 120, 897-906.
48. McDowell, J.M., Huang, S., McKinney, E.C., An, Y.-Q., and Meagher, R.B. (1996). Arabidopsis thaliana contains ten actin genes encoding six ancient protein subclasses. Genetics 142, 587-602.
49. Müller, A., Guan, C., Gälweiler, L., Tänzler, P., Huijser, P., Marchant, A., Parry, G., Bennett, M., Wisman, E., and Plame, K. (1998). AtPlN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J. 17, 6903-6911.
50. Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant. 15, 473-497.
51. Palme, K., and Gälweiler, L. (1999). PIN-pointing the molecular basis of auxin transport. Curr. Opin. Plant Biol. 2, 375-381.
52. Palmer, J.H. (1985). Epinasty, hyponasty, and related topics. In Encyclopedia of Plant Physiology, R.P. Pharis and D.M. Reid, eds (Berlin: Springer-Verlag), pp. 139-168.
53. Roman, G., Lubarsky, B., Keiber, J.J., Rothenberg, M., and Ecker, J. (1995). Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: Five novel mutant loci integrated into a stress response pathway. Genetics 139, 1393-1409.
54. Romano, C.P., Cooper, M.L., and Klee, H.J. (1993). Uncoupling auxin and ethylene effects in transgenic tobacco and Arabidopsis plants. Plant Cell 5, 181-189.
55. Rosen, E., Chen, R., and Masson, P.H. (1999). Root gravitropism: A complex response to a simple stimulus? Trends Plant Sci. 4, 407-412.
56. Rouse, D., Mackay, P., Stirnberg, P., Estelle, M., and Leyser, O. (1998). Changes in auxin response from mutations in an Aux/IAA gene. Science 279, 1371-1373.
57. Ruegger, M., Dewey, E., Hobbie, L., Brown, D., Bernasconi, P., Turner, J., Muday, G., and Estelle, M. (1997). Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects. Plant Cell 9, 745-757.
58. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
59. Schaller, G.E., and Bleecker, A.B. (1995). Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene. Science 270, 1809-1811.
60. Schwark, A., and Schierle, J. (1992). Interaction of ethylene and auxin in the regulation of hook growth. I. The role of auxin in different growing regions of the hypocotyl hook of Phaseolus vulgaris. J. Plant Physiol. 140, 562-570.
61. Sessions, A., Nemhauser, J.L., McColl, A., Roe, J.L., Feldmann, K.A., and Zambryski, P.C. (1997). ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development 124, 4481-4491.
62. Sitbon, F., and Perrot-Rechenmann, C. (1997). Expression of auxin-regulated genes. Physiol. Plant. 100, 443-455.
63. Spollen, W.G., LeNoble, M.E., Samuels, T.D., Bernstein, N., and Sharp, R.E. (2000). ABA accumulation maintains maize primary root elongation at low water potentials by restricting ethylene production. Plant Physiol. 122, 967-976.
64. Stowe-Evans, E.L., Harper, R.M., Motchoulski, A.V., and Liscum, E. (1998). NPH4, a conditional modulator of auxin-dependent differential growth responses in Arabidopsis. Plant Physiol. 118, 1265-1275.
65. Suttle, J.C. (1988). Effect of ethylene treatment on polar IAA transport, net IAA uptake and specific binding of N-1-naphthylphthalamic acid in tissues and microsomes isolated from etiolated pea epicotyls. Plant Physiol. 88, 795-799.
66. Tian, Q., and Reed, J.W. (1999). Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. Development 126, 711-721.
67. Ulmasov, T., Hagen, G., and Guilfoyle, T.J. (1999a). Activation and repression of transcription by auxin-response factors. Proc. Natl. Acad. Sci. USA 96, 5844-5849.
68. Ulmasov, T., Hagen, G., and Guilfoyle, T.J. (1999b). Dimerization and DNA binding of auxin response factors. Plant J. 19, 1-11.
69. Utsuno, K., Shikanai, T., Yamada, Y., and Hashimoto, T. (1998). AGR, an agravitropic locus of Arabidopsis thaliana, encodes a novel membrane-protein family member. Plant Cell Physiol. 39, 1111-1118.
70. Visser, E.J.W., Cohen, J.D., Barendse, G.W.M., Blom, C.W.P.M., and Voesenek, L.A.C.J. (1996). An ethylene-mediated increase in sensitivity to auxin induces adventitious root formation in flooded Rumex palusris Sm. Plant Physiol. 112, 1687-1692.
71. Watahiki, M.K., and Yamamoto, K.T. (1997). The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf. Plant Physiol. 115, 419-426.
72. Watahiki, M.K., Tatematsu, K., Fujihira, K., Yamamoto, M., and Yamamoto, K.T. (1999). The MSG1 and AXR1 genes of Arabidopsis are likely to act independently in growth-curvature responses of hypocotyl. Planta 207, 362-369.
73. Went, F.W., and Thimann, K.V. (1937). Phytohormones. (New York: Macmillan).
74. Woeste, K.E., Ye, C., and Kieber, J.J. (1999). Two Arabidopsis mutants that overproduce ethylene are affected in the posttranscriptional regulation of 1-aminocyclopropane-1-carboxylic acid synthase. Plant Phyisol. 119, 521-529.
75. Yang, S.F., and Hoffman, N.E. (1984). Ethylene biosynthesis and its regulation in higher plants. Annu. Rev. Plant Physiol. 35, 155-189.