Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity

Plant Cell

Volumn 17, Issue 11, 2005, Pages 2899-2910

  Pekker, Irena ^a   Alvarez, John Paul ^a,b   Eshed, Yuval ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENES; GENETIC ENGINEERING; MUTAGENESIS;

ARABIDOPSIS; KANADI MUTANTS; LAMINAR GROWTH; MUTANT PHENOTYPES;

PLANT CELL CULTURE;

CELLS; GENES; GENETIC ENGINEERING; PLANTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 29544441788     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.105.034876     Document Type: Article

References (55)

1. Allen, E., Xie, Z., Gustafson, A.M., and Carrington, J.C. (2005). MicroRNA-directed phasing during trans-acting siRNA biogenesis in Plants. Cell 121, 207-221.
2. Aloni, R., Schwalm, K., Langhans, M., and Ullrich, C.I. (2003). Gradual shifts in sites of free-auxin production during leaf-primordium development and their role in vascular differentiation and leaf morphogenesis in Arabidopsis. Planta 216, 841-853.
3. Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301, 653-657.
4. Bao, N., Lye, K.W., and Barton, M.K. (2004). MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev. Cell 7, 653-662.
5. Benkova, E., Michniewicz, M., Sauer, M., Teichmann, T., Seifertova, D., Jurgens, G., and Friml, J. (2003). Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115, 591-602.
6. Blilou, I., Xu, J., Wildwater, M., Willemsen, V., Paponov, I., Friml, J., Heidstra, R., Aida, M., Palme, K., and Scheres, B. (2005). The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433, 39-44.
7. Donnelly, P.M., Bonetta, D., Tsukaya, H., Dengler, R.E., and Dengler, N.G. (1999). Cell cycling and cell enlargement in developing leaves of Arabidopsis. Dev. Biol. 215, 407-419.
8. Emery, J.F., Floyd, S.K., Alvarez, J., Eshed, Y., Hawker, N.P., Izhaki, A., Baum, S.F., and Bowman, J.L. (2003). Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Curr. Biol. 13, 1768-1774.
9. Eshed, Y., Baum, S., and Bowman, J. (1999). Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99, 199-209.
10. Eshed, Y., Baum, S.F., Perea, J.V., and Bowman, J.L. (2001). Establishment of polarity in lateral organs of plants. Curr. Biol. 11, 1251-1260.
11. Eshed, Y., Izhaki, A., Baum, S.F., Floyd, S.K., and Bowman, J.L. (2004). Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities. Development 131, 2997-3006.
12. Friml, J., Vieten, A., Sauer, M., Weijers, D., Schwarz, H., Hamann, T., Offringa, R., and Jurgens, G. (2003). Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426, 147-153.
13. Greenboim-Wainberg, Y., Maymon, I., Borochov, R., Alvarez, J., Olszewski, N., Ori, N., Eshed, Y., and Weiss, D. (2004). Cross talk between gibberellin and cytokinin: The Arabidopsis GA response inhibitor SPINDLY plays a positive role in cytokinin signaling. Plant Cell 17, 92-102.
14. Guan, X., Stege, J., Kim, M., Dahmani, Z., Fan, N., Heifetz, P., Barbas III, C.F., and Briggs, S.P. (2002). Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors. Proc. Natl. Acad. Sci. USA 99, 13296-13301.
15. Hagen, G., and Guilfoyle, T. (2002). Auxin-responsive gene expression: Genes, promoters and regulatory factors. Plant Mol. Biol. 49, 373-385.
16. Harper, R.M., Stowe-Evans, E.L., Luesse, D.R., Muto, H., Tatematsu, K., Watahiki, M.K., Yamamoto, K., and Liscum, E. (2000). The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell 12, 757-770.
17. Juarez, M.T., Kui, J.S., Thomas, J., Heller, B.A., and Timmermans, M.C. (2004). MicroRNA-mediated repression of rolled leafl specifies maize leaf polarity. Nature 428, 84-88.
18. Kerstetter, R.A., Bollman, K., Taylor, R.A., Bomblies, K., and Poethig, R.S. (2001). KANADI regulates organ polarity in Arabidopsis. Nature 411, 706-709.
19. Kidner, C.A., and Martienssen, R.A. (2004). Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428, 81-84.
20. Lenhard, M., and Laux, T. (2003). Stem cell homeostasis in the Arabidopsis shoot meristem is regulated by intercellular movement of CLAVATA3 and its sequestration by CLAVATA1. Development 130, 3163-3173.
21. Li, H., Johnson, P., Stepanova, A., Alonso, J.M., and Ecker, J.R. (2004). Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev. Cell 7, 193-204.
22. Liscum, E., and Reed, J.W. (2002). Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol. Biol. 49, 387-400.
23. Mallory, A.C., Bartel, D.P., and Bartel, B. (2005). MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17, 1360-1375.
24. Mallory, A.C., Reinhart, B.J., Jones-Rhoades, M.W., Tang, G., Zamore, P.D., Barton, M.K., and Bartel, D.P. (2004). MicroRNA control of PHABULOSA in leaf development: Importance of pairing to the microRNA 5′ region. EMBO J. 23, 3356-3364.
25. Mattsson, J., Ckurshumova, W., and Berleth, T. (2003). Auxin signaling in Arabidopsis leaf vascular development. Plant Physiol. 131, 1327-1339.
26. McConnell, J.R., and Barton, M.K. (1998). Leaf polarity and meristem formation in Arabidopsis. Development 125, 2935-2942.
27. McConnell, J.R., Emery, J., Eshed, Y., Bao, N., Bowman, J., and Barton, M.K. (2001). Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411, 709-713.
28. McHale, N.A., and Koning, R.E. (2004). MicroRNA-directed cleavage of Nicotiana sylvestris PHAVOLUTA mRNA regulates the vascular cambium and structure of apical meristems. Plant Cell 16, 1730-1740.
29. Moore, I., Galweiler, L., Grosskopf, D., Schell, J., and Klaus, P.A. (1998). Transcription activation system for regulated gene expression in transgenic plants. Proc. Natl. Acad. Sci. USA 95, 376-381.
30. Nakajima, K., Sena, G., Nawy, T., and Benfey, P.M. (2001). Intercellular movement of the putative transcription factor SHR in root patterning. Nature 413, 307-311.
31. Nemhauser, J., Feldman, L., and Zambryski, P. (2000). Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127, 3877-3888.
32. Nishimura, T., Wada, T., and Okada, K. (2004). A key factor of translation reinitiation, ribosornal protein L24, is involved in gynoecium development in Arabidopsis. Biochem. Soc. Trans. 32, 611-613.
33. Ohta, M., Matsui, K., Hiratsu, K., Shinshi, H., and Ohme-Takagi, M. (2001). Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13, 1959-1968.
34. Okushima, Y., et al. (2005). Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19. Plant Cell 17, 444-463.
35. Parinov, S., Sevugan, M., Ye, D., Yang, W.O., Kumaran, M., and Sundaresan, V. (1999). Analysis of flanking sequences from dissociation insertion lines: A database for reverse genetics in Arabidopsis. Plant Cell 11, 2263-2270.
36. Peragine, A., Yoshikawa, M., Wu, G., Albrecht, H.L., and Poethig, R.S. (2004). SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting SiRNAs in Arabidopsis. Genes Dev. 18, 2368-2379.
37. Prigge, M.J., Otsuga, D., Alonso, J.M., Ecker, J.R., Drews, G.N., and Clark, S.E. (2005). Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 17, 61-76.
38. Reinhardt, D., Frenz, M., Mandel, T., and Kuhlemeier, C. (2005). Microsurgical and laser ablation analysis of leaf positioning and dorsoventral patterning in tomato. Development 132, 15-26.
39. Reinhardt, D., Mandel, T., and Kuhlemeier, C. (2000). Auxin regulates the initiation and radial position of plant lateral organs. Plant Cell 12, 507-518.
40. Reinhardt, D., Pesce, E.R., Stieger, P., Mandel, T., Baltensperger, K., Bennett, M., Traas, J., Friml, J., and Kuhlemeier, C. (2003). Regulation of phyllotaxis by polar auxin transport. Nature 426, 255-260.
41. Remington, D.L., Vision, T.J., Guilfoyle, T.J., and Reed, J.W. (2004). Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiol. 135, 1738-1752.
42. Sabatini, S., Beis, D., Wolkenfelt, H., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P., Leyser, O., Bechtold, N., Weisbeek, P., and Scheres, B. (1999). An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root. Cell 99, 463-472.
43. Sadowski, I., Ma, J., Triezenberg, S., and Ptashne, M. (1988). GAL4-VP16 is an unusually potent transcriptional activator. Nature 335, 563-564.
44. Sato, Y., Nishimura, A., Ito, M., Ashikari, M., Hirano, H.Y., and Matsuoka, M. (2001). Auxin response factor family in rice. Genes Genet. Syst. 76, 373-380.
45. Schoof, H., Lenhard, M., Haecker, A., Mayer, K.P., Jurgens, G., and Laux, T. (2000). The stem cell population of Arabidopsis shoot meristems is maintained by a regulatory loop between the CLAVATA and WUSCHEL genes. Cell 100, 635-644.
46. Sessions, A., Nemhauser, J.L., McColl, A., Roe, J.L., Feldmann, K.A., and Zambryski, P.C. (1997). ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development 124, 4481-4491.
47. Sessions, R.A. (1997). Arabidopsis (Brassicacaeae) flower development and gynoecium patterning in wild type and ettin mutants. Am. J. Bot. 84, 1179-1191.
48. Sessions, R.A., and Zambryski, P.C. (1995). Arabidopsis gynoecium structure in the wild and in ettin mutants. Development 121, 1519-1532.
49. Snow, M., and Snow, R. (1959). The dorsiventrality of leaf primordia. New Phytol. 58, 188-207.
50. Sussex, I.M. (1954). Experiments on the cause of dorsiventrality in leaves. Nature 174, 351-352.
51. Tiwari, S.B., Hagen, G., and Guilfoyle, T. (2003). The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15, 533-543.
52. Tiwari, S.B., Hagen, G., and Guilfoyle, T.J. (2004). Aux/IAA proteins contain a potent transcriptional repression domain. Plant Cell 16, 533-543.
53. Ulmasov, T., Hagen, G., and Guilfoyle, T.J. (1997). ARF1, a transcription factor that binds to auxin response elements. Science 276, 1865-1868.
54. Ulmasov, T., Hagen, G., and Guilfoyle, T.J. (1999). Dimerization and DNA binding of auxin response factors. Plant J. 19, 309-319.
55. Woodward, A.W., and Bartel, B. (2005). Auxin: Regulation, action, and interaction. Ann. Bot. (Lond.) 95, 707-735.