메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; GAMMA INTERFERON; INTERLEUKIN 2; LIPOPOLYSACCHARIDE; RNA 16S;

EID: 84957561694     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep20329     Document Type: Article
Times cited : (87)

References (58)
  • 1
    • 0014855986 scopus 로고
    • Rumen acidosis in goats
    • Gnanaprakasam, V. Rumen acidosis in goats. Indian Vet. J. 47, 904-910 (1970).
    • (1970) Indian Vet. J , vol.47 , pp. 904-910
    • Gnanaprakasam, V.1
  • 2
    • 84875485754 scopus 로고    scopus 로고
    • Haptoglobin and serum amyloid A in subacute ruminal acidosis in goats
    • González, F. et al. Haptoglobin and serum amyloid A in subacute ruminal acidosis in goats. Rev. Med. Vet. Zoot. 57, 159-167 (2010).
    • (2010) Rev. Med. Vet. Zoot , vol.57 , pp. 159-167
    • González, F.1
  • 3
    • 84927128279 scopus 로고    scopus 로고
    • High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats
    • Liu, J. H., Bian, G. R., Zhu, W. Y. & Mao, S. Y. High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats. Front. Microbiol. 6, 167 (2015).
    • (2015) Front. Microbiol. , vol.6 , pp. 167
    • Liu, J.H.1    Bian, G.R.2    Zhu, W.Y.3    Mao, S.Y.4
  • 4
    • 84875588848 scopus 로고    scopus 로고
    • Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats
    • Metzler-Zebeli, B. U. et al. Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats. Anaerobe. 20, 65-73 (2013).
    • (2013) Anaerobe , vol.20 , pp. 65-73
    • Metzler-Zebeli, B.U.1
  • 5
    • 79960979008 scopus 로고    scopus 로고
    • Ruminant Nutrition Symposium: Productivity, digestion, and health responses to hindgut acidosis in ruminants
    • Gressley, T. F., Hall, M. B. & Armentano, L. E. Ruminant Nutrition Symposium: Productivity, digestion, and health responses to hindgut acidosis in ruminants. J. Anim. Sci. 89, 1120-1130 (2011).
    • (2011) J. Anim. Sci. , vol.89 , pp. 1120-1130
    • Gressley, T.F.1    Hall, M.B.2    Armentano, L.E.3
  • 6
    • 84876237691 scopus 로고    scopus 로고
    • Exploring host-microbiota interactions in animal models and humans
    • Kostic, A. D., Howitt, M. R. & Garrett, W. S. Exploring host-microbiota interactions in animal models and humans. Gene. Dev. 27, 701-718 (2013).
    • (2013) Gene. Dev. , vol.27 , pp. 701-718
    • Kostic, A.D.1    Howitt, M.R.2    Garrett, W.S.3
  • 7
    • 84055192746 scopus 로고    scopus 로고
    • Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows
    • Li, S. et al. Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows. J. Dairy Sci. 95, 294-303 (2012).
    • (2012) J. Dairy Sci. , vol.95 , pp. 294-303
    • Li, S.1
  • 8
    • 84899090143 scopus 로고    scopus 로고
    • Relationship of severity of subacute ruminal acidosis to rumen fermentation, chewing activities, sorting behavior, and milk production in lactating dairy cows fed a high-grain diet
    • Gao, X. & Oba, M. Relationship of severity of subacute ruminal acidosis to rumen fermentation, chewing activities, sorting behavior, and milk production in lactating dairy cows fed a high-grain diet. J. Dairy Sci. 97, 3006-3016 (2014).
    • (2014) J. Dairy Sci. , vol.97 , pp. 3006-3016
    • Gao, X.1    Oba, M.2
  • 9
    • 85047688794 scopus 로고    scopus 로고
    • Epithelial response to high-grain diets involves alteration in nutrient transporters and Na+/K+-ATPase mRNA expression in rumen and colon of goats
    • Metzler-Zebeli, B. U. et al. Epithelial response to high-grain diets involves alteration in nutrient transporters and Na+/K+-ATPase mRNA expression in rumen and colon of goats. J. Anim. Sci. 91, 4256-4266 (2013).
    • (2013) J. Anim. Sci. , vol.91 , pp. 4256-4266
    • Metzler-Zebeli, B.U.1
  • 10
    • 84882695467 scopus 로고    scopus 로고
    • Quantifying the effect of monensin dose on the rumen volatile fatty acid profile in high-grain-fed beef cattle
    • Ellis, J. L. et al. Quantifying the effect of monensin dose on the rumen volatile fatty acid profile in high-grain-fed beef cattle. J. Anim. Sci. 90, 2717-2726 (2012).
    • (2012) J. Anim. Sci. , vol.90 , pp. 2717-2726
    • Ellis, J.L.1
  • 11
    • 84937522258 scopus 로고    scopus 로고
    • Pyrosequencing reveals shifts in the bacterial epimural community relative to dietary concentrate amount in goats
    • Wetzels, S. U. et al. Pyrosequencing reveals shifts in the bacterial epimural community relative to dietary concentrate amount in goats. J. Dairy Sci. 98, 5572-5587 (2015).
    • (2015) J. Dairy Sci. , vol.98 , pp. 5572-5587
    • Wetzels, S.U.1
  • 12
    • 84903760675 scopus 로고    scopus 로고
    • High-grain feeding alters caecal bacterial microbiota composition and fermentation and results in caecal mucosal injury in goats
    • Liu, J., Xu, T., Zhu, W. & Mao, S. High-grain feeding alters caecal bacterial microbiota composition and fermentation and results in caecal mucosal injury in goats. Br. J. Nutr. 112, 416-427 (2014).
    • (2014) Br. J. Nutr. , vol.112 , pp. 416-427
    • Liu, J.1    Xu, T.2    Zhu, W.3    Mao, S.4
  • 13
    • 84897596107 scopus 로고    scopus 로고
    • Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves
    • Malmuthuge, N., Griebel, P. J. & Guan le, L. Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves. Appl. Environ. Microbiol. 80, 2021-2028 (2014).
    • (2014) Appl. Environ. Microbiol. , vol.80 , pp. 2021-2028
    • Malmuthuge, N.1    Griebel, P.J.2    Le Guan, L.3
  • 14
    • 77957048867 scopus 로고    scopus 로고
    • Identification of gut-associated amylase, cellulase and protease-producing bacteria in three species of Indian major carps
    • Ray, A. K., Roy, T., Mondal, S. & Ringo, E. Identification of gut-associated amylase, cellulase and protease-producing bacteria in three species of Indian major carps. Aquac. Res. 41, 1462-1469 (2010).
    • (2010) Aquac. Res. , vol.41 , pp. 1462-1469
    • Ray, A.K.1    Roy, T.2    Mondal, S.3    Ringo, E.4
  • 15
    • 33144472155 scopus 로고    scopus 로고
    • In vitro kinetic analysis of oligofructose consumption by Bacteroides and Bifidobacterium spp. Indicates different degradation mechanisms
    • Van der Meulen, R., Makras, L., Verbrugghe, K., Adriany, T. & De Vuyst, L. In vitro kinetic analysis of oligofructose consumption by Bacteroides and Bifidobacterium spp. indicates different degradation mechanisms. Appl. Environ. Microbiol. 72, 1006-1012 (2006).
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1006-1012
    • Van Der Meulen, R.1    Makras, L.2    Verbrugghe, K.3    Adriany, T.4    De Vuyst, L.5
  • 16
    • 17044419261 scopus 로고    scopus 로고
    • Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation
    • Tang, Y. Q., Shigematsu, T., Morimura, S. & Kida, K. Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation. J. Biosci. Bioeng. 99, 150-164 (2005).
    • (2005) J. Biosci. Bioeng. , vol.99 , pp. 150-164
    • Tang, Y.Q.1    Shigematsu, T.2    Morimura, S.3    Kida, K.4
  • 17
    • 77954577597 scopus 로고    scopus 로고
    • Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease
    • Nakamura, N., Lin, H. C., McSweeney, C. S., Mackie, R. I. & Gaskins, H. R. Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease. Annu. Rev. Food. Sci. T. 1, 363-395 (2010).
    • (2010) Annu. Rev. Food. Sci. T , vol.1 , pp. 363-395
    • Nakamura, N.1    Lin, H.C.2    McSweeney, C.S.3    Mackie, R.I.4    Gaskins, H.R.5
  • 18
    • 2442655096 scopus 로고    scopus 로고
    • Lactic acid bacteria secrete metabolites retaining anti-inflammatory properties after intestinal transport
    • Menard, S. et al. Lactic acid bacteria secrete metabolites retaining anti-inflammatory properties after intestinal transport. Gut 53, 821-828 (2004).
    • (2004) Gut , vol.53 , pp. 821-828
    • Menard, S.1
  • 19
    • 80053385955 scopus 로고    scopus 로고
    • The role of protective and probiotic cultures in food and feed and their impact in food safety
    • Gaggia, F., Di Gioia, D., Baffoni, L. & Biavati, B. The role of protective and probiotic cultures in food and feed and their impact in food safety. Trends. Food. Sci. Tech. 22, 58-66 (2011).
    • (2011) Trends. Food. Sci. Tech. , vol.22 , pp. 58-66
    • Gaggia, F.1    Di Gioia, D.2    Baffoni, L.3    Biavati, B.4
  • 20
    • 34547872715 scopus 로고    scopus 로고
    • Probiotic properties of Lactococcus lactis ssp. lactis HV219, isolated from human vaginal secretions
    • Todorov, S., Botes, M., Danova, S. & Dicks, L. Probiotic properties of Lactococcus lactis ssp. lactis HV219, isolated from human vaginal secretions. J. Appl. Microbiol. 103, 629-639 (2007).
    • (2007) J. Appl. Microbiol. , vol.103 , pp. 629-639
    • Todorov, S.1    Botes, M.2    Danova, S.3    Dicks, L.4
  • 21
    • 0035374841 scopus 로고    scopus 로고
    • Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR
    • Tajima, K. et al. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl. Environ. Microbiol. 67, 2766-2774 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2766-2774
    • Tajima, K.1
  • 22
    • 85018193359 scopus 로고    scopus 로고
    • Interactions between gut microbiota, host genetics and diet modulate the predisposition to obesity and metabolic syndrome
    • Ussar, S. et al. Interactions between gut microbiota, host genetics and diet modulate the predisposition to obesity and metabolic syndrome. Cell. Metab. 22, 516-530 (2015).
    • (2015) Cell. Metab. , vol.22 , pp. 516-530
    • Ussar, S.1
  • 23
    • 84939564256 scopus 로고    scopus 로고
    • Monitoring host responses to the gut microbiota
    • Lichtman, J. S., Sonnenburg, J. L. & Elias, J. E. Monitoring host responses to the gut microbiota. ISME. J. 9, 1908-1915 (2015).
    • (2015) ISME. J. , vol.9 , pp. 1908-1915
    • Lichtman, J.S.1    Sonnenburg, J.L.2    Elias, J.E.3
  • 24
    • 84902546918 scopus 로고    scopus 로고
    • A high-grain diet alters the omasal epithelial structure and expression of tight junction proteins in a goat model
    • Liu, J. H., Xu, T. T., Zhu, W. Y. & Mao, S. Y. A high-grain diet alters the omasal epithelial structure and expression of tight junction proteins in a goat model. Vet. J. 201, 95-100 (2014).
    • (2014) Vet. J. , vol.201 , pp. 95-100
    • Liu, J.H.1    Xu, T.T.2    Zhu, W.Y.3    Mao, S.Y.4
  • 25
    • 79958819230 scopus 로고    scopus 로고
    • Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis
    • Steele, M. A. et al. Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis. Am. J. Physiol. Regul. Integr. Comp. Physiol. 300, 1515-1523 (2011).
    • (2011) Am. J. Physiol. Regul. Integr. Comp. Physiol. , vol.300 , pp. 1515-1523
    • Steele, M.A.1
  • 26
    • 77949526962 scopus 로고    scopus 로고
    • Ruminal acidosis and the rapid onset of ruminal parakeratosis in a mature dairy cow: A case report
    • Steele, M. A., AlZahal, O., Hook, S. E., Croom, J. & McBride, B. W. Ruminal acidosis and the rapid onset of ruminal parakeratosis in a mature dairy cow: a case report. Acta. Vet. Scand. 51, 39 (2009).
    • (2009) Acta. Vet. Scand. , vol.51 , pp. 39
    • Steele, M.A.1    AlZahal, O.2    Hook, S.E.3    Croom, J.4    McBride, B.W.5
  • 27
    • 0026000843 scopus 로고
    • Short-chain fatty acids induce reversible injury of porcine colon
    • Argenzio, R. & Meuten, D. Short-chain fatty acids induce reversible injury of porcine colon. Dig. Dis. Sci. 36, 1459-1468 (1991).
    • (1991) Dig. Dis. Sci. , vol.36 , pp. 1459-1468
    • Argenzio, R.1    Meuten, D.2
  • 28
    • 0029693922 scopus 로고    scopus 로고
    • Short-chain fatty acids in the human colon: Relation to gastrointestinal health and disease
    • Mortensen, P. B. & Clausen, M. R. Short-chain fatty acids in the human colon: Relation to gastrointestinal health and disease. Scand. J. Gastroentero. 31, 132-148 (1996).
    • (1996) Scand. J. Gastroentero , vol.31 , pp. 132-148
    • Mortensen, P.B.1    Clausen, M.R.2
  • 30
    • 78650624793 scopus 로고    scopus 로고
    • Innate immune mechanisms of colitis and colitis-associated colorectal cancer
    • Saleh, M. & Trinchieri, G. Innate immune mechanisms of colitis and colitis-associated colorectal cancer. Nat. Rev. Immunol. 11, 9-20 (2011).
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 9-20
    • Saleh, M.1    Trinchieri, G.2
  • 31
    • 79957576718 scopus 로고    scopus 로고
    • NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
    • Elinav, E. et al. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell. 145, 745-757 (2011).
    • (2011) Cell. , vol.145 , pp. 745-757
    • Elinav, E.1
  • 32
    • 0034111016 scopus 로고    scopus 로고
    • Phylogenetic relationships of butyrate-producing bacteria from the human gut
    • Barcenilla, A. et al. Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl. Environ. Microbiol. 66, 1654-1661 (2000).
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1654-1661
    • Barcenilla, A.1
  • 34
    • 84868526965 scopus 로고    scopus 로고
    • Role of commensal gut bacteria in inflammatory bowel diseases
    • Loh, G. & Blaut, M. Role of commensal gut bacteria in inflammatory bowel diseases. Gut. Microbes. 3, 544-555 (2012).
    • (2012) Gut. Microbes , vol.3 , pp. 544-555
    • Loh, G.1    Blaut, M.2
  • 35
    • 78649686679 scopus 로고    scopus 로고
    • A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
    • Willing, B. P. et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology. 139, 1844-1854 (2010).
    • (2010) Gastroenterology , vol.139 , pp. 1844-1854
    • Willing, B.P.1
  • 36
    • 84892601529 scopus 로고    scopus 로고
    • Downregulation of cellular protective factors of rumen epithelium in goats fed high energy diet
    • Hollmann, M. et al. Downregulation of cellular protective factors of rumen epithelium in goats fed high energy diet. PLoS One. 8, e81602 (2013).
    • (2013) PLoS One , vol.8
    • Hollmann, M.1
  • 37
  • 38
    • 61449108191 scopus 로고    scopus 로고
    • A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation
    • Khafipour, E., Krause, D. O. & Plaizier, J. C. A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation. J. Dairy Sci. 92, 1060-1070 (2009).
    • (2009) J. Dairy Sci. , vol.92 , pp. 1060-1070
    • Khafipour, E.1    Krause, D.O.2    Plaizier, J.C.3
  • 39
    • 84880045227 scopus 로고    scopus 로고
    • Effects of subacute ruminal acidosis challenges on fermentation and biogenic amines in the rumen of dairy cows
    • Wang, D. S., Zhang, R. Y., Zhu, W. Y. & Mao, S. Y. Effects of subacute ruminal acidosis challenges on fermentation and biogenic amines in the rumen of dairy cows. Livest. Sci. 155, 262-272 (2013).
    • (2013) Livest. Sci. , vol.155 , pp. 262-272
    • Wang, D.S.1    Zhang, R.Y.2    Zhu, W.Y.3    Mao, S.Y.4
  • 40
    • 40649110927 scopus 로고    scopus 로고
    • Subacute ruminal acidosis in dairy cows: The physiological causes, incidence and consequences
    • Plaizier, J. C., Krause, D. O., Gozho, G. N. & McBride, B. W. Subacute ruminal acidosis in dairy cows: the physiological causes, incidence and consequences. Vet. J. 176, 21-31 (2008).
    • (2008) Vet. J , vol.176 , pp. 21-31
    • Plaizier, J.C.1    Krause, D.O.2    Gozho, G.N.3    McBride, B.W.4
  • 42
    • 37149023095 scopus 로고    scopus 로고
    • Acidosis and lipopolysaccharide from Escherichia coli B : 055 cause hyperpermeability of rumen and colon tissues
    • Emmanuel, D. G. V., Madsen, K. L., Churchill, T. A., Dunn, S. M. & Ametaj, B. N. Acidosis and lipopolysaccharide from Escherichia coli B : 055 cause hyperpermeability of rumen and colon tissues. J. Dairy Sci. 90, 5552-5557 (2007).
    • (2007) J. Dairy Sci. , vol.90 , pp. 5552-5557
    • Emmanuel, D.G.V.1    Madsen, K.L.2    Churchill, T.A.3    Dunn, S.M.4    Ametaj, B.N.5
  • 43
    • 37649001196 scopus 로고    scopus 로고
    • Effect of disodium fumarate on ruminal metabolism and rumen bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA
    • Mao, S., Zhang, G. & Zhu, W. Effect of disodium fumarate on ruminal metabolism and rumen bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA. Anim. Feed. Sci. Tech. 140, 293-306 (2008).
    • (2008) Anim. Feed. Sci. Tech. , vol.140 , pp. 293-306
    • Mao, S.1    Zhang, G.2    Zhu, W.3
  • 44
    • 79958819230 scopus 로고    scopus 로고
    • Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis
    • Steele, M. A. et al. Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis. Am. J. Physiol. Regul. Integr. Comp. Physiol. 300, 1515-1523 (2011).
    • (2011) Am. J. Physiol. Regul. Integr. Comp. Physiol. , vol.300 , pp. 1515-1523
    • Steele, M.A.1
  • 45
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P. & Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159 (1987).
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 46
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele, J. et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3, 0034. 1-0034.11 (2002).
    • (2002) Genome Biol. , vol.3 , pp. 0034.1-0034.11
    • Vandesompele, J.1
  • 47
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso, J. G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME. J. 6, 1621-1624 (2012).
    • (2012) ISME. J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1
  • 48
    • 78049437553 scopus 로고    scopus 로고
    • The effect of nutrient deposition on bacterial communities in Arctic tundra soil
    • Campbell, B. J., Polson, S. W., Hanson, T. E., Mack, M. C. & Schuur, E. A. The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environ. Microbiol. 12, 1842-1854 (2010).
    • (2010) Environ. Microbiol. , vol.12 , pp. 1842-1854
    • Campbell, B.J.1    Polson, S.W.2    Hanson, T.E.3    Mack, M.C.4    Schuur, E.A.5
  • 49
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 50
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environl. Microbiol. 72, 5069-5072 (2006).
    • (2006) Appl. Environl. Microbiol. , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1
  • 51
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso, J. G. et al. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26, 266-267 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1
  • 52
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
    • Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. Evol. 26, 1641-1650 (2009).
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 53
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007).
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 54
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone, C. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235 (2005).
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 55
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541 (2009).
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 56
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille, M. G. I. et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814 (2013).
    • (2013) Nat. Biotechnol , vol.31 , pp. 814
    • Langille, M.G.I.1
  • 57
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M. & Goto, S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.