Assessment of genetic diversity and plant growth promoting attributes of psychrotolerant bacteria allied with wheat (Triticum aestivum) from the northern hills zone of India

Annals of Microbiology

Volumn 65, Issue 4, 2015, Pages 1885-1899

  Verma, Priyanka ^a,b   Yadav, Ajar Nath ^a,c   Khannam, Kazy Sufia ^b   Panjiar, Neha ^c   Kumar, Sanjay ^a   Saxena, Anil Kumar ^a   Suman, Archna ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^b NATIONAL INSTITUTE OF TECHNOLOGY   (India)

^c BIRLA INSTITUTE OF TECHNOLOGY   (India)

Author keywords

Endophytic; Epiphytic; K solubilisation; Northern hills zone; Rhizospheric

Indexed keywords

EID: 84957438802     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-014-1027-4     Document Type: Article

References (67)

1. Aleksandrov VG, Blagodyr RN, Ilev IP (1967) Liberation of phosphoric acid from apatite by silicate bacteria. Mikrobiol Z 29:111–114
2. Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H (2000) Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50:1563–1589
3. Araújo WL, Marcon J, Maccheroni W, van Elsas JD, van Vuurde JW, Azevedo JL (2002) Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl Environ Microbiol 68:4906–4914
4. Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere interactions with plants and other organisms. Annu Rev Plant Biol 57:233–266
5. Bakker AW, Schippers B (1987) Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas SPP-mediated plant growth-stimulation. Soil Biol Biochem 19:451–457
6. Bargabus R, Zidack N, Sherwood J, Jacobsen B (2002) Characterisation of systemic resistance in sugar beet elicited by a non-pathogenic, phyllosphere-colonizing Bacillus mycoides, biological control agent. Physiol Mol Plant Pathol 61:289–298
7. Beneduzi A, Peres D, da Costa PB, Bodanese Zanettini MH, Passaglia LMP (2008) Genetic and phenotypic diversity of plant-growth-promoting bacilli isolated from wheat fields in southern Brazil. Res Microbiol 159:244–250
8. Bisht SC, Mishra PK, Joshi GK (2013) Genetic and functional diversity among root-associated psychrotrophic Pseudomonad’s isolated from the Himalayan plants. Arch Microbiol 195:605–615
9. Boddey R, De Oliveira O, Urquiaga S, Reis V, De Olivares F, Baldani V, Döbereiner J (1995) Biological nitrogen fixation associated with sugar cane and rice: contributions and prospects for improvement. Plant Soil 174:195–209
10. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254
11. Bray RH, Kurtz L (1945) Determination of total, organic, and available forms of phosphorus in soils. Soil Sci 59:39–46
12. Bric JM, Bostock RM, Silverstone SE (1991) Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Appl Environ Microbiol 57:535–538
13. Brown ME, Burlingham SK (1968) Production of plant growth substances by Azotobacter chroococcum. J Gen Microbiol 53:135–144
14. Cappucino JC, Sherman N (1992) Nitrogen cycle. In: Microbiology: a laboratory manual, 4th edn. Benjamin/Cumming, New York, pp 311–312
15. Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71:4951–4959
16. Conn VM, Franco CM (2004) Effect of microbial inoculants on the indigenous actinobacterial endophyte population in the roots of wheat as determined by terminal restriction fragment length polymorphism. Appl Environ Microbiol 70:6407–6413
17. Coroler L, Elomari M, Hoste B, Gillis M, Izard D, Leclerc H (1996) Pseudomonas rhodesiae sp. nov., a new species isolated from natural mineral waters. Syst Appl Microbiol 19:600–607
18. Dey R, Pal K, Bhatt D, Chauhan S (2004) Growth promotion and yield enhancement of peanut (Arachis hypogaea L.) by application of plant growth-promoting rhizobacteria. Microbiol Res 159:371–394
19. Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843–7853
20. Ghosh S, Penterman JN, Little RD, Chavez R, Glick BR (2003) Three newly isolated plant growth-promoting bacilli facilitate the seedling growth of canola. Brassica campestris. Plant Physiol Biochem 41:277–281
21. Goldstein AH (1994) Involvement of the quinoprotein glucose dehydrogenase in the solubilization of exogenous phosphates by gram-negative bacteria. In: Torriani-Gorni A, Yagil E, Silver S (eds) Phosphate in microorganisms: cellular and molecular biology. ASM Press, Washington, pp 197–203
22. Grover M, Ali SZ, Sandhya V, Rasul A, Venkateswarlu B (2011) Role of microorganisms in adaptation of agriculture crops to abiotic stresses. World J Microbiol Biotechnol 27:1231–1240
23. Gulati A, Rahi P, Vyas P (2008) Characterization of phosphate-solubilizing fluorescent pseudomonads from the rhizosphere of seabuckthorn growing in the cold deserts of Himalayas. Curr Microbiol 56:73–79
24. Gupta HS, Kant L (2012) Wheat improvement in Northern hills of India. Agric Res 1:100–116
25. Han SO, New P (1998) Variation in nitrogen fixing ability among natural isolates of Azospirillum. Microb Ecol 36:193–201
26. Hantsis-Zacharov E, Halpern M (2007) Culturable psychrotrophic bacterial communities in raw milk and their proteolytic and lipolytic traits. Appl Environ Microbiol 73:7162–7168
27. Holland MA, Polacco JC (1994) PPFMs and other covert contaminants: is there more to plant physiology than just plant? Annu Rev Plant Biol 45:197–209
28. Holland MA, Davis R, Moffitt S, O’Laughlin K, Peach D, Sussan S, Wimbrow L, Tayman B (2000) Using “leaf prints” to investigate a common bacterium. Am Biol Teach 62:128–131
29. Hu X, Chen J, Guo J (2006) Two phosphate and potassium-solubilizing bacteria isolated from Tianmu mountain, Zhejiang, China. World J Microbiol Biotechnol 22:983–990
30. Jaccard P (1912) The distribution of the flora in the alpine zone. New Phytol 11:37–50
31. Jacobson CB, Pasternak J, Glick BR (1994) Partial purification and characterization of 1-aminocyclopropane-1-carboxylate deaminase from the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can J Microbiol 40:1019–1025
32. Jha P, Kumar A (2009) Characterization of novel plant growth promoting endophytic bacterium Achromobacter xylosoxidans from wheat plant. Microb Ecol 58:179–188
33. Kloepper J, Schroth M, Miller T (1980) Effects of rhizosphere colonization by plant growth-promoting rhizobacteria on potato plant development and yield. Phytopathology 70:1078–1082
34. Kumar M, Yadav AN, Tiwari R, Prasanna R, Saxena AK (2013) Deciphering the diversity of culturable thermotolerant bacteria from Manikaran hot springs. Ann Microbiol 64:741–751
35. Kumar M, Yadav AN, Tiwari R, Prasanna R, Saxena AK (2014) Evaluating the diversity of culturable thermotolerant bacteria from four hot springs of India. J Biodivers Bioprospect Dev 1:127. doi:10.4172/ijbbd.1000127
36. Liu Y, Zuo S, Zou Y, Wang J, Song W (2013) Investigation on diversity and population succession dynamics of endophytic bacteria from seeds of maize (Zea mays L., Nongda108) at different growth stages. Ann Microbiol 63:71–79
37. Madhaiyan M, Poonguzhali S (2014) Methylobacterium pseudosasicola sp. nov. and Methylobacterium phyllostachyos sp. nov., two novel species isolated from bamboo leaf surfaces. Int J Syst Evol Microbiol 64:2376–2384. doi:10.1099/ijs.0.057232-0
38. Magnani G, Didonet C, Cruz L, Picheth C, Pedrosa F, Souza E (2010) Diversity of endophytic bacteria in Brazilian sugarcane. Genet Mol Res 9:250–258
39. McInroy JA, Kloepper JW (1995) Population dynamics of endophytic bacteria in field-grown sweet corn and cotton. Can J Microbiol 41:895–901
40. Mehta S, Nautiyal CS (2001) An efficient method for qualitative screening of phosphate-solubilizing bacteria. Curr Microbiol 43:51–56
41. Misaghi I, Donndelinger C (1990) Endophytic bacteria in symptom-free cotton plants. Phytopathology 80:808–811
42. Mishra PK, Bisht SC, Ruwari P, Selvakumar G, Joshi GK, Bisht JK, Bhatt JC, Gupta HS (2011) Alleviation of cold stress in inoculated wheat (Triticum aestivum L.) seedlings with psychrotolerant Pseudomonads from NW Himalayas. Arch Microbiol 193:497–513
43. Monib M, Zahra MK, Abdel Al, Heggo A (1984) Role of silicate bacteria in releasing K and Si from biotite and orthoclase. Soil biology and conservation of the biosphere. In: Szegi, J. (ed) Akademiai Kiado, Budapest, pp 733–743
44. Murphy J, Riley J (1962) A modified single solution method for the determination of phosphate in natural waters. Anal Chim Acta 27:31–36
45. Nejad P, Johnson PA (2000) Endophytic bacteria induce growth promotion and wilt disease suppression in oilseed rape and tomato. Biol Control 18:208–215
46. Pandey S, Singh S, Yadav AN, Nain L, Saxena AK (2013) Phylogenetic diversity and characterization of novel and efficient cellulase producing bacterial isolates from various extreme environments. Biosci Biotechnol Biochem 77:1474–1480
47. Patten CL, Glick BR (2002) Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Appl Environ Microbiol 68:3795–3801
48. Rico A, Ortiz-Barredo A, Ritter E, Murillo J (2004) Genetic characterization of Erwinia amylovora strains by amplified fragment length polymorphism. J Appl Microbiol 96:302–310
49. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
50. Saravanan VS, Osborne J, Madhaiyan M, Mathew L, Chung J, Ahn K, Sa T (2007) Zinc metal solubilization by Gluconacetobacter diazotrophicus and induction of pleomorphic cells. J Microbiol Biotechnol 17:1477–1482
51. Schwyn B, Neilands J (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:47–56
52. Selvakumar G, Joshi P, Suyal P, Mishra PK, Joshi GK, Bisht JK, Bhatt JC, Gupta HS (2011) Pseudomonas lurida M2RH3 (MTCC 9245), a psychrotolerant bacterium from the Uttarakhand Himalayas, solubilizes phosphate and promotes wheat seedling growth. World J Microbiol Biotechnol 27:1129–1135
53. Sheng XF (2005) Growth promotion and increased potassium uptake of cotton andrape by a potassium releasing strain ofBacillus edaphicus. Soil Biol Biochem 37:1918–1922
54. Sijam K, Dikin A (2005) Biochemical and physiological characterization of Burkholderia cepacia as biological control agent. Int J Agric Biol 7:385–388
55. Sturz A, Christie B, Matheson B, Arsenault W, Buchanan N (1999) Endophytic bacterial communities in the periderm of potato tubers and their potential to improve resistance to soil-borne plant pathogens. Plant Pathol 48:360–369
56. Sun L, Lu Z, Bie X, Lu F, Yang S (2006) Isolation and characterization of a co-producer of fengycins and surfactins, endophytic Bacillus amyloliquefaciens ES-2, from Scutellaria baicalensis Georgi. World J Microbiol Biotechnol 22:1259–1266
57. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
58. Thomas P, Soly TA (2009) Endophytic bacteria associated with growing shoot tips of banana (Musa sp.) cv. Grand naine and the affinity of endophytes to the host. Microb Ecol 58:952–964
59. Tilak KVBR, Ranganayaki N, Pal KK, De R, Saxena AK, Nautiyal CS, Mittal S, Tripathi AK, Johri BN (2005) Diversity of plant growth and soil health supporting bacteria. Curr Sci 89:136–150
60. Verma P, Yadav AN, Kazy SK, Saxena AK, Suman A (2014) Evaluating the diversity and phylogeny of plant growth promoting bacteria associated with wheat (Triticum aestivum) growing in central zone of India. Int J Curr Microbiol Appl Sci 3:432–447
61. Vyas P, Rahi P, Gulati A (2009) Stress tolerance and genetic variability of phosphate-solubilizing fluorescent Pseudomonas from the cold deserts of the trans-Himalayas. Microb Ecol 58:425–434
62. Walkley A, Black IA (1934) An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Sci 37:29–38
63. Yadav AN, Sachan SG, Verma P, Saxena AK (2014a) Prospecting cold deserts of north western Himalayas for microbial diversity and plant growth promoting attributes. J Biosci Bioeng. doi:10.1016/j.jbiosc.2014.11.006
64. Yadav AN, Sachan SG, Verma P, Tyagi SP, Kaushik R, Saxena AK (2014b) Culturable diversity and functional annotation of psychrotrophic bacteria from cold desert of Leh Ladakh (India). World J Microbiol Biotechnol. doi:10.1007/s11274-014-1768-z
65. Yadav AN, Verma P, Kumar M, Pal KK, Dey R, Gupta A, Padaria JC, Gujar GT, Kumar S, Suman A, Prasanna R, Saxena AK (2014c) Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India. Ann Microbiol. doi:10.1007/s13213-014-0897-9
66. Yang J, Kloepper JW, Ryu C-M (2009) Rhizosphere bacteria help plants tolerate abiotic stress. Trends Plant Sci 14:1–4
67. Zinniel DK, Lambrecht P, Harris NB, Feng Z, Kuczmarski D, Higley P, Ishimaru CA, Arunakumari A, Barletta RG, Vidaver AK (2002) Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl Environ Microbiol 68:2198–2208