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Volumn 195, Issue 9, 2013, Pages 605-615

Genetic and functional diversity among root-associated psychrotrophic Pseudomonad's isolated from the Himalayan plants

Author keywords

BOX PCR; Functional diversity; Genetic diversity; PGPR; Pseudomonas; RAPD; Rep PCR

Indexed keywords

RNA 16S;

EID: 84884281655     PISSN: 03028933     EISSN: 1432072X     Source Type: Journal    
DOI: 10.1007/s00203-013-0908-4     Document Type: Article
Times cited : (29)

References (40)
  • 1
    • 0032108626 scopus 로고    scopus 로고
    • Inoculants of plant growth promoting bacteria for use in agriculture
    • 10.1016/S0734-9750(98)00003-2 1:CAS:528:DyaK1cXktFCitbs%3D
    • Bashan Y (1998) Inoculants of plant growth promoting bacteria for use in agriculture. Biotechnol Adv 16:729-770
    • (1998) Biotechnol Adv , vol.16 , pp. 729-770
    • Bashan, Y.1
  • 2
    • 34249290109 scopus 로고    scopus 로고
    • Pseudomonas lurida sp. Nov., a fluorescent species associated with the phyllosphere of grasses
    • 17473245 10.1099/ijs.0.64793-0 1:CAS:528:DC%2BD2sXntVCgs7g%3D
    • Behrendt U, Ulrich A, Schumann P, Meyer JM, Spröe C (2007) Pseudomonas lurida sp. nov., a fluorescent species associated with the phyllosphere of grasses. Int J Syst Evol Microbiol 57:979-985
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 979-985
    • Behrendt, U.1    Ulrich, A.2    Schumann, P.3    Meyer, J.M.4    Spröe, C.5
  • 3
    • 14744277081 scopus 로고
    • DNA amplification fingerprinting using very short arbitrary oligonucleotide primers
    • 1367225 10.1038/nbt0691-553 1:CAS:528:DyaK38XhsVCqsr4%3D
    • Caetano-Anolles G, Bassam BJ, Gresshoff PM (1991) DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Bio-Technology 9:553-557
    • (1991) Bio-Technology , vol.9 , pp. 553-557
    • Caetano-Anolles, G.1    Bassam, B.J.2    Gresshoff, P.M.3
  • 4
    • 3843102542 scopus 로고    scopus 로고
    • Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species
    • 15292125 10.1128/JB.186.16.5239-5248.2004 1:CAS:528:DC%2BD2cXmvVKhtb4%3D
    • Cladera AM, Bennasar A, Barceló M, Lalucat J, García- Valdés E (2004) Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186:5239-5248
    • (2004) J Bacteriol , vol.186 , pp. 5239-5248
    • Cladera, A.M.1    Bennasar, A.2    Barceló, M.3    Lalucat, J.4    García-Valdés, E.5
  • 5
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium isolates and other soil bacteria
    • De-Brujin FJ (1992) Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergenic consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium isolates and other soil bacteria. Appl Environ Microbiol 58:2180-2187
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2180-2187
    • De-Brujin, F.J.1
  • 6
    • 9644303100 scopus 로고    scopus 로고
    • Functional diversity of soil microbial community, rock phosphate dissolution and growth of Acacia seyal as influenced by grass-, litter- and soil-feeding termite nest structure amendments
    • 10.1016/j.geoderma.2004.05.012 1:CAS:528:DC%2BD2cXhtVKmtbnK
    • Duponnois R, Paugy M, Thioulouse J, Masse D, Lepage M (2005) Functional diversity of soil microbial community, rock phosphate dissolution and growth of Acacia seyal as influenced by grass-, litter- and soil-feeding termite nest structure amendments. Geoderma 124(2005):349-361
    • (2005) Geoderma , vol.124 , Issue.2005 , pp. 349-361
    • Duponnois, R.1    Paugy, M.2    Thioulouse, J.3    Masse, D.4    Lepage, M.5
  • 7
    • 0002083778 scopus 로고
    • Pseudomonas as a factor in the growth of winter wheat (Triticum aestivum L.)
    • 10.1016/0038-0717(84)90128-7
    • Elliot LF, Lynch JM (1984) Pseudomonas as a factor in the growth of winter wheat (Triticum aestivum L.). Soil Biochem 16:69-71
    • (1984) Soil Biochem , vol.16 , pp. 69-71
    • Elliot, L.F.1    Lynch, J.M.2
  • 8
    • 0012343853 scopus 로고    scopus 로고
    • Structure and function of an alpine ecosystem
    • W.D. Bowman T.R. Seastedt (eds) Oxford University Press New York, CO
    • Greenland D, Losleben M (2001) Structure and function of an alpine ecosystem. In: Bowman WD, Seastedt TR (eds) Climate. Oxford University Press, New York, CO, pp 15-31
    • (2001) Climate , pp. 15-31
    • Greenland, D.1    Losleben, M.2
  • 9
    • 65549095153 scopus 로고    scopus 로고
    • Plant growth promoting and rhizosphere-competent Acinetobacter rhizosphaera strain BIHB 723 from the cold deserts of the Himalayas
    • 19137371 10.1007/s00284-008-9339-x 1:CAS:528:DC%2BD1MXisV2ntbg%3D
    • Gulati A, Vyas P, Rai P, Kasana RC (2009) Plant growth promoting and rhizosphere-competent Acinetobacter rhizosphaera strain BIHB 723 from the cold deserts of the Himalayas. Curr Microbiol 58:371-377
    • (2009) Curr Microbiol , vol.58 , pp. 371-377
    • Gulati, A.1    Vyas, P.2    Rai, P.3    Kasana, R.C.4
  • 10
    • 85010750741 scopus 로고
    • Molecular biology methods for Bacillus
    • Department of Entomology, University of Maryland, College Park, MD
    • Harwood CR, Cutting SM (1990) Molecular biology methods for Bacillus. Techniques in Microbial Genetics, Practical Manual, Department of Entomology, University of Maryland, College Park, MD, vol 56, pp 1314-1321
    • (1990) Techniques in Microbial Genetics, Practical Manual , vol.56 , pp. 1314-1321
    • Harwood, C.R.1    Cutting, S.M.2
  • 11
    • 0002845812 scopus 로고
    • The ecology and physiology of Psychrotrophic microorganisms
    • R.A. Herbert (eds) The society for general microbiology, Academic Press London
    • Herbert RA (1986) The ecology and physiology of Psychrotrophic microorganisms. In: Herbert RA (ed) Microbes in extreme environments. The society for general microbiology, Academic Press, London, pp 1-24
    • (1986) Microbes in Extreme Environments , pp. 1-24
    • Herbert, R.A.1
  • 12
    • 0000210258 scopus 로고
    • Nouvelles recherches sur la distribution florale
    • Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat 44:223-270
    • (1908) Bull Soc Vaud Sci Nat , vol.44 , pp. 223-270
    • Jaccard, P.1
  • 13
  • 16
    • 0026710382 scopus 로고
    • Short interspersed repetitive DNA sequences in prokaryotic genomes
    • 1624445 1:CAS:528:DyaK38XkvVChuro%3D
    • Lupski JR, Weinstock GM (1992) Short interspersed repetitive DNA sequences in prokaryotic genomes. J Bacteriol 174:4525-4529
    • (1992) J Bacteriol , vol.174 , pp. 4525-4529
    • Lupski, J.R.1    Weinstock, G.M.2
  • 17
    • 0033626325 scopus 로고    scopus 로고
    • Pyoverdines: Pigments siderophore and potential taxonomic markers of fluorescent Pseudomonas species
    • 11041343 10.1007/s002030000188 1:CAS:528:DC%2BD3cXmvVyqu7o%3D
    • Meyer JM (2000) Pyoverdines: pigments siderophore and potential taxonomic markers of fluorescent Pseudomonas species. Arch Microbiol 174:135-142
    • (2000) Arch Microbiol , vol.174 , pp. 135-142
    • Meyer, J.M.1
  • 18
    • 58149525370 scopus 로고    scopus 로고
    • Characterization of a psychrotolerant plant growth promoting Pseudomonas sp. Strain PGERs17 (MTCC 9000) isolated from North Western Indian Himalayas
    • 10.1007/BF03175558
    • Mishra PK, Mishra S, Selvakumar G, Bisht SC, Bisht JK, Kundu S, Gupta HS (2008) Characterization of a psychrotolerant plant growth promoting Pseudomonas sp. strain PGERs17 (MTCC 9000) isolated from North Western Indian Himalayas. Ann Microbiol 58:561-568
    • (2008) Ann Microbiol , vol.58 , pp. 561-568
    • Mishra, P.K.1    Mishra, S.2    Selvakumar, G.3    Bisht, S.C.4    Bisht, J.K.5    Kundu, S.6    Gupta, H.S.7
  • 19
    • 73349140512 scopus 로고    scopus 로고
    • Isolation, molecular characterization and growth promotion activities of a cold tolerant bacterium Pseudomonas sp. NARs9 (MTCC 9002) from Indian Himalayas
    • 19915739 10.4067/S0716-97602009000300005 1:CAS:528:DC%2BC3cXotVyhsrY%3D
    • Mishra PK, Mishra S, Bisht SC, Selvakumar G, Kundu S, Bisht JK, Gupta HS (2009) Isolation, molecular characterization and growth promotion activities of a cold tolerant bacterium Pseudomonas sp. NARs9 (MTCC 9002) from Indian Himalayas. Biol Res 42:305-313
    • (2009) Biol Res , vol.42 , pp. 305-313
    • Mishra, P.K.1    Mishra, S.2    Bisht, S.C.3    Selvakumar, G.4    Kundu, S.5    Bisht, J.K.6    Gupta, H.S.7
  • 21
    • 78650676764 scopus 로고    scopus 로고
    • Bioassociative effect of cold tolerant Pseudomonas spp. And Rhizobium leguminosarum-PR1 on iron acquisition, nutrient uptake and growth of lentil (Lens culinaris L.)
    • 10.1016/j.ejsobi.2010.11.005 1:CAS:528:DC%2BC3MXms1Ci
    • Mishra PK, Bisht SC, Ruwari P, Joshi GK, Singh G, Bisht JK, Bhatt JC (2011a) Bioassociative effect of cold tolerant Pseudomonas spp. and Rhizobium leguminosarum-PR1 on iron acquisition, nutrient uptake and growth of lentil (Lens culinaris L.). Eur J Soil Biol 47:35-43
    • (2011) Eur J Soil Biol , vol.47 , pp. 35-43
    • Mishra, P.K.1    Bisht, S.C.2    Ruwari, P.3    Joshi, G.K.4    Singh, G.5    Bisht, J.K.6    Bhatt, J.C.7
  • 22
    • 79959588597 scopus 로고    scopus 로고
    • Alleviation of cold stress effects in wheat (Triticum aestivum L.) seedlings by application of psychrotolerant pseudomonads from N.W. Himalayas
    • 21442319 10.1007/s00203-011-0693-x 1:CAS:528:DC%2BC3MXnsFWmur0%3D
    • Mishra PK, Bisht SC, Ruwari P, Selvakumar G, Bisht JK, Bhatt JC, Gupta HS (2011b) Alleviation of cold stress effects in wheat (Triticum aestivum L.) seedlings by application of psychrotolerant pseudomonads from N.W. Himalayas. Arch Microbiol 193:497-513
    • (2011) Arch Microbiol , vol.193 , pp. 497-513
    • Mishra, P.K.1    Bisht, S.C.2    Ruwari, P.3    Selvakumar, G.4    Bisht, J.K.5    Bhatt, J.C.6    Gupta, H.S.7
  • 24
    • 84856991767 scopus 로고    scopus 로고
    • Coinoculation of Rhizobium leguminosarum-PR1 with a cold tolerant Pseudomonas sp. Improves iron Acquisition, Nutrient Uptake and growth of Field Pea (Pisum sativum L.)
    • 10.1080/01904167.2012.636127 1:CAS:528:DC%2BC38XhtVGksbk%3D
    • Mishra PK, Bisht SC, Mishra S, Selvakumar G, Bisht J, Gupta HS (2012b) Coinoculation of Rhizobium leguminosarum-PR1 with a cold tolerant Pseudomonas sp. Improves iron Acquisition, Nutrient Uptake and growth of Field Pea (Pisum sativum L.). J Plant Nutr 35:243-256
    • (2012) J Plant Nutr , vol.35 , pp. 243-256
    • Mishra, P.K.1    Bisht, S.C.2    Mishra, S.3    Selvakumar, G.4    Bisht, J.5    Gupta, H.S.6
  • 25
    • 0016516090 scopus 로고
    • Psychrophilic bacteria
    • 1095004 1:STN:280:DyaE2M7otlajtw%3D%3D
    • Morita RY (1975) Psychrophilic bacteria. Bacteriol Rev 39:144-167
    • (1975) Bacteriol Rev , vol.39 , pp. 144-167
    • Morita, R.Y.1
  • 26
    • 0000311716 scopus 로고
    • Introduction to the family Pseudomonadaceae
    • A. Balows H. Truper M. Dworkin W. Harder K.H. Schleifer (eds) Springer New York
    • Palleroni NJ (1992) Introduction to the family Pseudomonadaceae. In: Balows A, Truper H, Dworkin M, Harder W, Schleifer KH (eds) The prokaryotes. Springer, New York, pp 3071-3079
    • (1992) The Prokaryotes , pp. 3071-3079
    • Palleroni, N.J.1
  • 27
    • 0002467026 scopus 로고
    • Some properties and taxonomic subdivisions of genus Pseudomonas
    • 10.1146/annurev.py.10.090172.000445
    • Palleroni NJ, Doudoroff M (1972) Some properties and taxonomic subdivisions of genus Pseudomonas. Annu Rev Phytopathol 10:73-100
    • (1972) Annu Rev Phytopathol , vol.10 , pp. 73-100
    • Palleroni, N.J.1    Doudoroff, M.2
  • 28
    • 33746738138 scopus 로고    scopus 로고
    • Characterization of a phosphate solubilizing and antagonistic strain of Pseudomonas putida (B0) Isolated from a sub-Alpine location in the Indian Central Himalaya
    • 16832725 10.1007/s00284-006-4590-5 1:CAS:528:DC%2BD28XmvFeit7g%3D
    • Pandey A, Trivedi P, Kumar B, Palni LMS (2006) Characterization of a phosphate solubilizing and antagonistic strain of Pseudomonas putida (B0) Isolated from a sub-Alpine location in the Indian Central Himalaya. Curr Microbiol 53:102-107
    • (2006) Curr Microbiol , vol.53 , pp. 102-107
    • Pandey, A.1    Trivedi, P.2    Kumar, B.3    Palni, L.M.S.4
  • 30
    • 34648820620 scopus 로고    scopus 로고
    • Biocontrol and PGPR feature in native strains isolated from saline soils of Argentina
    • 17700983 10.1007/s00284-006-0654-9 1:CAS:528:DC%2BD2sXhtVOisbbK
    • Principe A, Alvarez F, Castro MG, Zachi L, Fischer SE, Mori GB, Jofre E (2007) Biocontrol and PGPR feature in native strains isolated from saline soils of Argentina. Curr Microbiol 55:314-322
    • (2007) Curr Microbiol , vol.55 , pp. 314-322
    • Principe, A.1    Alvarez, F.2    Castro, M.G.3    Zachi, L.4    Fischer, S.E.5    Mori, G.B.6    Jofre, E.7
  • 32
    • 57349199374 scopus 로고    scopus 로고
    • Exiguobacterium acetylicum strain 1P (MTCC 8707) a novel bacterial antagonist from the North Western Indian Himalayas
    • 10.1007/s11274-008-9874-4
    • Selvakumar G, Joshi P, Nazim S, Mishra PK, Kundu S, Gupta HS (2009a) Exiguobacterium acetylicum strain 1P (MTCC 8707) a novel bacterial antagonist from the North Western Indian Himalayas. World J Microbiol Biotechnol 25:131-137
    • (2009) World J Microbiol Biotechnol , vol.25 , pp. 131-137
    • Selvakumar, G.1    Joshi, P.2    Nazim, S.3    Mishra, P.K.4    Kundu, S.5    Gupta, H.S.6
  • 33
    • 69949157726 scopus 로고    scopus 로고
    • Mountain aspect influences the genetic clustering of psychrotolerant phosphate solubilizing Pseudomonads in the Uttarakhand Himalayas
    • 19636619 10.1007/s00284-009-9456-1 1:CAS:528:DC%2BD1MXhtVygt73J
    • Selvakumar G, Joshi P, Mishra PK, Bisht JK, Gupta HS (2009b) Mountain aspect influences the genetic clustering of psychrotolerant phosphate solubilizing Pseudomonads in the Uttarakhand Himalayas. Curr Microbiol 59:432-438
    • (2009) Curr Microbiol , vol.59 , pp. 432-438
    • Selvakumar, G.1    Joshi, P.2    Mishra, P.K.3    Bisht, J.K.4    Gupta, H.S.5
  • 34
    • 79955069334 scopus 로고    scopus 로고
    • Pseudomonas lurida M2RH3 (MTCC 9245), a psychrotolerant bacterium from the Uttarakhand Himalayas, solubilizes phosphate and promotes wheat seedling growth
    • 10.1007/s11274-010-0559-4
    • Selvakumar G, Joshi P, Suyal P, Mishra PK, Joshi GK, Bisht JK, Bhatt JC, Gupta HS (2010) Pseudomonas lurida M2RH3 (MTCC 9245), a psychrotolerant bacterium from the Uttarakhand Himalayas, solubilizes phosphate and promotes wheat seedling growth. World J Microbiol Biotechnol 27:1129-1135
    • (2010) World J Microbiol Biotechnol , vol.27 , pp. 1129-1135
    • Selvakumar, G.1    Joshi, P.2    Suyal, P.3    Mishra, P.K.4    Joshi, G.K.5    Bisht, J.K.6    Bhatt, J.C.7    Gupta, H.S.8
  • 35
    • 0033764648 scopus 로고    scopus 로고
    • The cause of Pseudomonas diversity
    • 11021911 1:CAS:528:DC%2BD3cXnslWrsb8%3D
    • Spiers AJ, Buckling A, Rainey PB (2000) The cause of Pseudomonas diversity. Microbiology 146:2345-2350
    • (2000) Microbiology , vol.146 , pp. 2345-2350
    • Spiers, A.J.1    Buckling, A.2    Rainey, P.B.3
  • 37
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • 1762913 10.1093/nar/19.24.6823 1:CAS:528:DyaK38XnslelsA%3D%3D
    • Versalovic J, Koeuth T, Lupski JR (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19:6823-6831
    • (1991) Nucleic Acids Res , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 38
    • 0027992990 scopus 로고
    • Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
    • 1:CAS:528:DyaK2MXhtVOmsLc%3D
    • Versalovic J, Schneider M, De-Bruijn FJ, Lupski JR (1994) Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5:25-40
    • (1994) Methods Mol Cell Biol , vol.5 , pp. 25-40
    • Versalovic, J.1    Schneider, M.2    De-Bruijn, F.J.3    Lupski, J.R.4
  • 39
    • 0025008570 scopus 로고
    • DNA polymorphisms amplified by arbitrary primers are useful as genetic markers
    • 1979162 10.1093/nar/18.22.6531 1:CAS:528:DyaK3MXjslWmsA%3D%3D
    • Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res 18:6531-6535
    • (1990) Nucleic Acid Res , vol.18 , pp. 6531-6535
    • Williams, J.G.K.1    Kubelik, A.R.2    Livak, K.J.3    Rafalski, J.A.4    Tingey, S.V.5
  • 40
    • 0037043993 scopus 로고    scopus 로고
    • Growing-season temperature and soil moisture along a 10 km transect across a forested landscape
    • 10.3354/cr022057
    • Xu M, Chen J, Qi Y (2002) Growing-season temperature and soil moisture along a 10 km transect across a forested landscape. Clim Res 22:57-72
    • (2002) Clim Res , vol.22 , pp. 57-72
    • Xu, M.1    Chen, J.2    Qi, Y.3


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