메뉴 건너뛰기




Volumn , Issue , 2014, Pages 3-18

Working with the tree of life in comparative studies: How to build and tailor phylogenies to interspecific datasets

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84956976063     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-3-662-43550-2_2     Document Type: Chapter
Times cited : (6)

References (72)
  • 1
    • 14544289241 scopus 로고    scopus 로고
    • Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation
    • Abdo Z, Minin VN, Joyce P, Sullivan J (2005) Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation. Mol Biol Evol 22 (3):691-703. doi:10.1093/molbev/msi050
    • (2005) Mol Biol Evol , vol.22 , Issue.3 , pp. 691-703
    • Abdo, Z.1    Minin, V.N.2    Joyce, P.3    Sullivan, J.4
  • 2
    • 33644588719 scopus 로고    scopus 로고
    • Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty
    • Alfaro ME, Huelsenbeck JP (2006) Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty. Syst Biol 55(1):89-96. doi:10.1080/10635150500433565
    • (2006) Syst Biol , vol.55 , Issue.1 , pp. 89-96
    • Alfaro, M.E.1    Huelsenbeck, J.P.2
  • 3
    • 84885864944 scopus 로고    scopus 로고
    • Evolution of egg dummies in tanganyikan cichid fishes: The roles of parental care and sexual selection
    • Amcoff M, Gonzalez-Voyer A, Kolm N (2013) Evolution of egg dummies in tanganyikan cichid fishes: the roles of parental care and sexual selection. J Evol Biol 26:2369-2382. doi: 10.1111/jeb.12231
    • (2013) J Evol Biol , vol.26 , pp. 2369-2382
    • Amcoff, M.1    Gonzalez-Voyer, A.2    Kolm, N.3
  • 4
    • 84859329829 scopus 로고    scopus 로고
    • Improved harmonic mean estimator for phylogenetic model evidence
    • Arima S, Tardella L (2012) Improved harmonic mean estimator for phylogenetic model evidence. J Comput Biol 19(4):418-438. doi:10.1089/cmb.2010.0139
    • (2012) J Comput Biol , vol.19 , Issue.4 , pp. 418-438
    • Arima, S.1    Tardella, L.2
  • 5
    • 77954574612 scopus 로고    scopus 로고
    • The 10k Trees website: A new online resource for primate phylogeny
    • Arnold C, Matthews LJ, Nunn CL (2010) The 10k Trees website: a new online resource for primate phylogeny. Evol Anthropol 19:114-118
    • (2010) Evol Anthropol , vol.19 , pp. 114-118
    • Arnold, C.1    Matthews, L.J.2    Nunn, C.L.3
  • 7
    • 0032936412 scopus 로고    scopus 로고
    • Building large trees by combining phylogenetic information: A complete phylogeny of the extant Carnivora (Mammalia)
    • Bininda-Emonds O, Gittleman JL, Purvis A (1999) Building large trees by combining phylogenetic information: a complete phylogeny of the extant Carnivora (Mammalia). Biol Rev 74:143-175
    • (1999) Biol Rev , vol.74 , pp. 143-175
    • Bininda-Emonds, O.1    Gittleman, J.L.2    Purvis, A.3
  • 9
    • 84860176456 scopus 로고    scopus 로고
    • Independent contrasts and PGLS regression estimators are equivalent
    • Blomberg SP, Lefevre JG, Wells JA, Waterhouse M (2012) Independent contrasts and PGLS regression estimators are equivalent. Syst Biol 61(3):382-391. doi:10.1093/sysbio/syr118
    • (2012) Syst Biol , vol.61 , Issue.3 , pp. 382-391
    • Blomberg, S.P.1    Lefevre, J.G.2    Wells, J.A.3    Waterhouse, M.4
  • 10
    • 79961055146 scopus 로고    scopus 로고
    • The genome as a life-history character: Why rate of molecular evolution varies between mammal species
    • Bromham L (2011) The genome as a life-history character: why rate of molecular evolution varies between mammal species. Phil Trans R Soc B 366:2503-2513. doi:10.1098/rstb.2011.0014
    • (2011) Phil Trans R Soc B , vol.366 , pp. 2503-2513
    • Bromham, L.1
  • 11
    • 79951569533 scopus 로고    scopus 로고
    • Genome-scale phylogenetics: Inferring the plant tree of life from 18,896 gene trees
    • Burleigh JG, Bansal MS, Eulenstein O, Hartmann S, Wehe A, Vision TJ (2011) Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Syst Biol 60(2):117-125. doi:10.1093/sysbio/syq072
    • (2011) Syst Biol , vol.60 , Issue.2 , pp. 117-125
    • Burleigh, J.G.1    Bansal, M.S.2    Eulenstein, O.3    Hartmann, S.4    Wehe, A.5    Vision, T.J.6
  • 12
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 13
    • 84862764044 scopus 로고    scopus 로고
    • Bayesian models for comparative analysis integrating phylogenetic uncertainty
    • de Villemereuil P, Wells JA, Edwards RD, Blomberg SP (2012) Bayesian models for comparative analysis integrating phylogenetic uncertainty. BMC Evol Biol 12. doi:10.1186/1471-2148-12-102
    • (2012) BMC Evol Biol , pp. 12
    • De Villemereuil, P.1    Wells, J.A.2    Edwards, R.D.3    Blomberg, S.P.4
  • 14
    • 17744394753 scopus 로고    scopus 로고
    • Phylogenomics and the reconstruction of the tree of life
    • Desluc F, Brinkmann H, Philippe H (2005) Phylogenomics and the reconstruction of the tree of life. Nature Rev Genet 6(5):361-375
    • (2005) Nature Rev Genet , vol.6 , Issue.5 , pp. 361-375
    • Desluc, F.1    Brinkmann, H.2    Philippe, H.3
  • 15
    • 0030429446 scopus 로고    scopus 로고
    • Phylogenetic uncertainties and sensitivity analyses in comparative biology
    • Donoghue MJ, Ackerly DD (1996) Phylogenetic uncertainties and sensitivity analyses in comparative biology. Phil Trans R Soc B 351:1241-2149
    • (1996) Phil Trans R Soc B , vol.351 , pp. 1241-2149
    • Donoghue, M.J.1    Ackerly, D.D.2
  • 18
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J (1985) Phylogenies and the comparative method. Am Nat 125(1):1-15
    • (1985) Am Nat , vol.125 , Issue.1 , pp. 1-15
    • Felsenstein, J.1
  • 20
    • 72849125317 scopus 로고    scopus 로고
    • Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies
    • FitzJohn RG, Maddison WP, Otto SP (2009a) Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. Syst Biol 58(6):595-611. doi:10.1093/sysbio/syp067
    • (2009) Syst Biol , vol.58 , Issue.6 , pp. 595-611
    • Fitzjohn, R.G.1    Maddison, W.P.2    Otto, S.P.3
  • 21
    • 72849125317 scopus 로고    scopus 로고
    • Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies
    • FitzJohn RG, Maddison WP, Otto SP (2009b) Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies. Syst Biol 58:595-611
    • (2009) Syst Biol , vol.58 , pp. 595-611
    • Fitzjohn, R.G.1    Maddison, W.P.2    Otto, S.P.3
  • 22
    • 0036920097 scopus 로고    scopus 로고
    • Phylogenetic analysis and comparative data: A test and review of evidence
    • Freckleton RP, Harvey PH, Pagel M (2002) Phylogenetic analysis and comparative data: a test and review of evidence. Am Nat 160(6):712-726. doi:10.1086/343873
    • (2002) Am Nat , vol.160 , Issue.6 , pp. 712-726
    • Freckleton, R.P.1    Harvey, P.H.2    Pagel, M.3
  • 23
    • 67649118280 scopus 로고    scopus 로고
    • Mitochondrial whims: Metabolic rate, longevity and the rate of molecular evolution
    • rsbl.2008.0662 [pii]
    • Galtier N, Jobson RW, Nabholz B, Glemin S, Blier PU (2009) Mitochondrial whims: metabolic rate, longevity and the rate of molecular evolution. Biol Lett 5 (3):413-416. doi:rsbl.2008.0662 [pii] 10.1098/rsbl.2008.0662
    • (2009) Biol Lett , vol.5 , Issue.3 , pp. 413-416
    • Galtier, N.1    Jobson, R.W.2    Nabholz, B.3    Glemin, S.4    Blier, P.U.5
  • 24
    • 47749133060 scopus 로고    scopus 로고
    • Sexual selection determines parental care patterns in cichlid fishes
    • EVO426 [pii]
    • Gonzalez-Voyer A, Fitzpatrick JL, Kolm N (2008) Sexual selection determines parental care patterns in cichlid fishes. Evolution 62 (8):2015-2026. doi:EVO426 [pii] 10.1111/j. 1558-5646.2008.00426.x
    • (2008) Evolution , vol.62 , Issue.8 , pp. 2015-2026
    • Gonzalez-Voyer, A.1    Fitzpatrick, J.L.2    Kolm, N.3
  • 25
    • 0024975994 scopus 로고
    • The phylogenetic regression
    • Grafen A (1989) The phylogenetic regression. Phil Trans R Soc B 326(1223):119-157
    • (1989) Phil Trans R Soc B , vol.326 , Issue.1223 , pp. 119-157
    • Grafen, A.1
  • 27
    • 0030772835 scopus 로고    scopus 로고
    • Stabilizing selection and the comparative analysis of adaptation
    • Hansen TF (1997) Stabilizing selection and the comparative analysis of adaptation. Evolution 51(5):1341-1351
    • (1997) Evolution , vol.51 , Issue.5 , pp. 1341-1351
    • Hansen, T.F.1
  • 29
    • 77956890234 scopus 로고
    • Monte carlo sampling methods using markov chains and their applications
    • Hastings WK (1970) Monte carlo sampling methods using markov chains and their applications. Biometrika 57(1):97-109. doi:10.2307/2334940
    • (1970) Biometrika , vol.57 , Issue.1 , pp. 97-109
    • Hastings, W.K.1
  • 31
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-2314
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 32
    • 34447280382 scopus 로고    scopus 로고
    • Within-species variation and measurement error in phylogenetic comparative methods
    • Ives AR, Midford PE, Garland T (2007) Within-species variation and measurement error in phylogenetic comparative methods. Syst Biol 56(2):252-270. doi:10.1080/10635150701313830
    • (2007) Syst Biol , vol.56 , Issue.2 , pp. 252-270
    • Ives, A.R.1    Midford, P.E.2    Garland, T.3
  • 33
    • 84869088692 scopus 로고    scopus 로고
    • The global diversity of birds in space and time
    • Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO (2012a) The global diversity of birds in space and time. Nature 491(7424):444-448. doi:10.1038/nature11631
    • (2012) Nature , vol.491 , Issue.7424 , pp. 444-448
    • Jetz, W.1    Thomas, G.H.2    Joy, J.B.3    Hartmann, K.4    Mooers, A.O.5
  • 34
    • 84869088692 scopus 로고    scopus 로고
    • The global diversity of birds in space and time
    • Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO (2012b) The global diversity of birds in space and time. Nature 491:444-448. doi:10.1038/nature11631
    • (2012) Nature , vol.491 , pp. 444-448
    • Jetz, W.1    Thomas, G.H.2    Joy, J.B.3    Hartmann, K.4    Mooers, A.O.5
  • 35
    • 0032773940 scopus 로고    scopus 로고
    • Homoplasy increases phylogenetic structure
    • Kälersjö M, Albert VA, Farris JS (1999) Homoplasy increases phylogenetic structure. Cladistics 15(1):91-93. doi:10.1111/j.1096-0031.1999.tb00400.x
    • (1999) Cladistics , vol.15 , Issue.1 , pp. 91-93
    • Kälersjö, M.1    Albert, V.A.2    Farris, J.S.3
  • 36
    • 67349175998 scopus 로고    scopus 로고
    • How well do evolutionary trees describe genetic relationships among populations?
    • Kalinowski ST (2009) How well do evolutionary trees describe genetic relationships among populations? Heredity 102:506-513. doi:10.1038/hdy.2008.136
    • (2009) Heredity , vol.102 , pp. 506-513
    • Kalinowski, S.T.1
  • 37
    • 10644255705 scopus 로고    scopus 로고
    • Evolutionary relationships between 15 Plasmodium species from new and old World primates (Including humans): An 18S rDNA cladistic analysis
    • Leclerc MC, Hugot JP, Durand P, Renaud F (2004) Evolutionary relationships between 15 Plasmodium species from new and old World primates (including humans): an 18S rDNA cladistic analysis. Parasitology 129:677-684
    • (2004) Parasitology , vol.129 , pp. 677-684
    • Leclerc, M.C.1    Hugot, J.P.2    Durand, P.3    Renaud, F.4
  • 39
    • 70350374880 scopus 로고    scopus 로고
    • An overview of phylogeny reconstruction
    • Aluru S, Chapman & Hall/CRC Computer & Information Science, Boca Raton, FL
    • Linder CR, Warnow T (2006) An overview of phylogeny reconstruction. In: Aluru S (ed) Handbook of computational molecular biology. Chapman & Hall/CRC Computer & Information Science, Boca Raton, FL
    • (2006) Handbook of Computational Molecular Biology
    • Linder, C.R.1    Warnow, T.2
  • 41
    • 0030619995 scopus 로고    scopus 로고
    • Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data
    • Martins EP, Hansen TF (1997) Phylogenies and the comparative method: a general approach to incorporating phylogenetic information into the analysis of interspecific data. Am Nat 149(4):646-667
    • (1997) Am Nat , vol.149 , Issue.4 , pp. 646-667
    • Martins, E.P.1    Hansen, T.F.2
  • 42
    • 0036957240 scopus 로고    scopus 로고
    • Phylogeny shape and the phylogenetic comparative method
    • Martins EP, Housworth EA (2002) Phylogeny shape and the phylogenetic comparative method. Syst Biol 51(6):873-880. doi:10.1080/10635150290155863
    • (2002) Syst Biol , vol.51 , Issue.6 , pp. 873-880
    • Martins, E.P.1    Housworth, E.A.2
  • 44
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • Minin V, Abdo Z, Joyce P, Sullivan J (2003) Performance-based selection of likelihood models for phylogeny estimation. Syst Biol 52 (5):674-683. doi:10.1080/10635150390235494
    • (2003) Syst Biol , vol.52 , Issue.5 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 45
    • 0030845166 scopus 로고    scopus 로고
    • Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes
    • Moriyama EN, Powell JR (1997) Synonymous substitution rates in Drosophila: mitochondrial versus nuclear genes. J Mol Evol 45:378-391
    • (1997) J Mol Evol , vol.45 , pp. 378-391
    • Moriyama, E.N.1    Powell, J.R.2
  • 46
    • 80053652698 scopus 로고    scopus 로고
    • Reconciling molecular phylogenies with the fossil record
    • Morlon H, Parsons TL, Plotkin JB (2011) Reconciling molecular phylogenies with the fossil record. Proc Natl Acad Sci 108(39):16327-16332. doi:10.1073/pnas.1102543108
    • (2011) Proc Natl Acad Sci , vol.108 , Issue.39 , pp. 16327-16332
    • Morlon, H.1    Parsons, T.L.2    Plotkin, J.B.3
  • 47
    • 84888137812 scopus 로고    scopus 로고
    • Computational approaches to species phylogeny inference and gene tree reconciliation
    • Nakhleh L (2013) Computational approaches to species phylogeny inference and gene tree reconciliation. Trends Ecol Evol 28(12):719-728. doi:10.1016/j.tree.2013.09.004
    • (2013) Trends Ecol Evol , vol.28 , Issue.12 , pp. 719-728
    • Nakhleh, L.1
  • 50
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel M (1999) Inferring the historical patterns of biological evolution. Nature 401:877-884
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.1
  • 51
    • 33646735054 scopus 로고    scopus 로고
    • Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
    • Pagel M, Meade A (2006) Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am Nat 167(6):808-825
    • (2006) Am Nat , vol.167 , Issue.6 , pp. 808-825
    • Pagel, M.1    Meade, A.2
  • 52
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • Pagel M, Meade A, Barker D (2004a) Bayesian estimation of ancestral character states on phylogenies. Syst Biol 53(3):673-684. doi:10.1080/10635150490522232
    • (2004) Syst Biol , vol.53 , Issue.3 , pp. 673-684
    • Pagel, M.1    Meade, A.2    Barker, D.3
  • 53
    • 9744245452 scopus 로고    scopus 로고
    • Bayesian estimation of ancestral character states on phylogenies
    • Pagel M, Meade A, Barker D (2004b) Bayesian estimation of ancestral character states on phylogenies. Syst Biol 53(5):673-684
    • (2004) Syst Biol , vol.53 , Issue.5 , pp. 673-684
    • Pagel, M.1    Meade, A.2    Barker, D.3
  • 55
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53(5):793-808. doi:10.1080/10635150490522304
    • (2004) Syst Biol , vol.53 , Issue.5 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 56
    • 56849123122 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • Vienna, Austria
    • R Development Core Team (2007) R: A language and environment for statistical computing. R foundation for statistical computing, Vienna, Austria. doi:http://www.R-project.orgS
    • (2007) R Foundation for Statistical Computing
    • Development Core Team, R.1
  • 57
    • 84865709842 scopus 로고    scopus 로고
    • A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation
    • Revell LJ, Reynolds RG (2012) A new Bayesian method for fitting evolutionary models to comparative data with intraspecific variation. Evolution 66(9):2697-2707. doi: 10.1111/j.1558-5646.2012.01645.x
    • (2012) Evolution , vol.66 , Issue.9 , pp. 2697-2707
    • Revell, L.J.1    Reynolds, R.G.2
  • 58
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 59
    • 84874708221 scopus 로고    scopus 로고
    • Building megaphylogenies for macroecology: Taking up the challenge
    • Roquet C, Thuiller W, Lavergne S (2013) Building megaphylogenies for macroecology: taking up the challenge. Ecography 36:13-26. doi:10.1111/j.1600-0587.2012.07773.x
    • (2013) Ecography , vol.36 , pp. 13-26
    • Roquet, C.1    Thuiller, W.2    Lavergne, S.3
  • 60
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • Rzhetsky A, Nei M (1992) A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9:945-967
    • (1992) Mol Biol Evol , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 61
    • 0023375195 scopus 로고
    • The neighbor-joining method—a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method—a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406-425
    • (1987) Mol Biol Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 62
    • 0030773749 scopus 로고    scopus 로고
    • A nonparametric approach to estimating divergence times in the absence of rate constancy
    • Sanderson MJ (1997) A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol Biol Evol 14(12):1218-1231
    • (1997) Mol Biol Evol , vol.14 , Issue.12 , pp. 1218-1231
    • Sanderson, M.J.1
  • 63
    • 84864661485 scopus 로고    scopus 로고
    • Fast molecular evolution associated with high active metabolic rates in poison frogs
    • Santos JC (2012) Fast molecular evolution associated with high active metabolic rates in poison frogs. Mol Biol Evol 29(8):2001-2018
    • (2012) Mol Biol Evol , vol.29 , Issue.8 , pp. 2001-2018
    • Santos, J.C.1
  • 64
    • 84879788686 scopus 로고    scopus 로고
    • Deconstructing heterostyly: The evolutionary role of incompatibility system, pollinators, and floral architecture
    • Santos-Gally R, Gonzalez-Voyer A, Arroyo J (2013) Deconstructing heterostyly: the evolutionary role of incompatibility system, pollinators, and floral architecture. Evolution 67(7):2072-2082
    • (2013) Evolution , vol.67 , Issue.7 , pp. 2072-2082
    • Santos-Gally, R.1    Gonzalez-Voyer, A.2    Arroyo, J.3
  • 66
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • btl446 [pii]
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (21):2688-2690. btl446 [pii] doi:10.1093/bioinformatics/btl446
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 67
    • 79953751483 scopus 로고    scopus 로고
    • Controlling for non-independence in comparative analysis of patterns across populations within species
    • Stone GN, Nee S, Felsenstein J (2011) Controlling for non-independence in comparative analysis of patterns across populations within species. Phil Trans R Soc B 366(1569):1410-1424. doi:10.1098/rstb.2010.0311
    • (2011) Phil Trans R Soc B , vol.366 , Issue.1569 , pp. 1410-1424
    • Stone, G.N.1    Nee, S.2    Felsenstein, J.3
  • 68
    • 0036700909 scopus 로고    scopus 로고
    • The effects of topological inaccuracy in evolutionary trees on the phylogenetic comparative method of independent contrasts
    • Symonds MRE (2002) The effects of topological inaccuracy in evolutionary trees on the phylogenetic comparative method of independent contrasts. Syst Biol 51:541-553
    • (2002) Syst Biol , vol.51 , pp. 541-553
    • Symonds, M.1
  • 69
    • 84887168027 scopus 로고    scopus 로고
    • PASTIS: An R package to facilitate phylogenetic assembly with soft taxonomic inferences
    • Thomas GH, Hartmann K, Jetz W, Joy JB, Mimoto A, Mooers AO (2013) PASTIS: an R package to facilitate phylogenetic assembly with soft taxonomic inferences. Methods Ecol Evol 4:1011-1017. doi:10.1111/2041-210X.12117
    • (2013) Methods Ecol Evol , vol.4 , pp. 1011-1017
    • Thomas, G.H.1    Hartmann, K.2    Jetz, W.3    Joy, J.B.4    Mimoto, A.5    Mooers, A.O.6
  • 70
    • 0000175619 scopus 로고
    • Rates of synonymous substitution in plant nuclear genes
    • Wolfe KH, Sharp PM, Li W-H (1989) Rates of synonymous substitution in plant nuclear genes. J Mol Evol 29:208-211
    • (1989) J Mol Evol , vol.29 , pp. 208-211
    • Wolfe, K.H.1    Sharp, P.M.2    Li, W.-H.3
  • 71
    • 84885819796 scopus 로고    scopus 로고
    • Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
    • Wu D, Jospin G, Eisen J (2013) Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups. PLoS ONE 8(10):e77033. doi:10.1371/journal.pone.0077033
    • (2013) Plos ONE , vol.8 , Issue.10
    • Wu, D.1    Jospin, G.2    Eisen, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.