Application of a novel "Pan-genome"-based strategy for assigning RNAseq transcript reads to Staphylococcus aureus strains

PLoS ONE

Volumn 10, Issue 12, 2015, Pages

  Chaves Moreno, Diego ^a   Wos Oxley, Melissa L ^a   Jáuregui, Ruy ^a,b   Medina, Eva ^a   Oxley, Andrew P A ^a,c   Pieper, Dietmar H ^a  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^b AGRESEARCH GRASSLANDS   (New Zealand)

^c SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

IRON; TRANSCRIPTOME;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; COMPARATIVE STUDY; CONTROLLED STUDY; CULTURE MEDIUM; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; HUMAN; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PAN GENOME; PURINE METABOLISM; RNA ANALYSIS; RNA SEQUENCE; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS EPIDERMIDIS; STARVATION; UPREGULATION; BIOLOGY; GENE LIBRARY; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; METAGENOMICS; MICROBIOLOGY; NUCLEIC ACID DATABASE; PROCEDURES; STAPHYLOCOCCUS INFECTION;

COMPUTATIONAL BIOLOGY; DATABASES, NUCLEIC ACID; GENE LIBRARY; GENOME, BACTERIAL; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOMICS; STAPHYLOCOCCAL INFECTIONS; STAPHYLOCOCCUS AUREUS; TRANSCRIPTOME;

EID: 84956953568     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0145861     Document Type: Article

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