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Volumn 12, Issue , 2011, Pages

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

EID: 79953902020     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-187     Document Type: Article
Times cited : (47)

References (48)
  • 1
    • 0037024849 scopus 로고    scopus 로고
    • Staphylococcus aureus resistant to vancomycin--United States, 2002
    • CDC (2002)
    • CDC (2002) Staphylococcus aureus resistant to vancomycin--United States, 2002. MMWR 2002, 51:565-567. CDC (2002).
    • (2002) MMWR , vol.51 , pp. 565-567
  • 2
    • 0030746910 scopus 로고    scopus 로고
    • Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks
    • Kluytmans J, van Belkum A, Verbrugh H. Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks. Clin Microbial Rev 1997, 10:505-520.
    • (1997) Clin Microbial Rev , vol.10 , pp. 505-520
    • Kluytmans, J.1    van Belkum, A.2    Verbrugh, H.3
  • 3
    • 67249141842 scopus 로고    scopus 로고
    • Nasal decolonization of Staphylococcus aureus with mupirocin: strengths, weaknesses and future prospects
    • 10.1093/jac/dkp159, 2692503, 19451132
    • Coates T, Bax R, Coates A. Nasal decolonization of Staphylococcus aureus with mupirocin: strengths, weaknesses and future prospects. J Antimicrob Chemother 2009, 64:9-15. 10.1093/jac/dkp159, 2692503, 19451132.
    • (2009) J Antimicrob Chemother , vol.64 , pp. 9-15
    • Coates, T.1    Bax, R.2    Coates, A.3
  • 4
    • 34547148985 scopus 로고    scopus 로고
    • Clinical practice. Skin and soft-tissue infections caused by methicillin-resistant Staphylococcus aureus
    • 10.1056/NEJMcp070747, 17652653
    • Daum RS. Clinical practice. Skin and soft-tissue infections caused by methicillin-resistant Staphylococcus aureus. N Engl J Med 2007, 357:380-390. 10.1056/NEJMcp070747, 17652653.
    • (2007) N Engl J Med , vol.357 , pp. 380-390
    • Daum, R.S.1
  • 5
    • 44149103169 scopus 로고    scopus 로고
    • Skin and soft-tissue infections caused by community-acquired methicillin-resistant Staphylococcus aureus
    • Stryjewski ME, Chambers HF. Skin and soft-tissue infections caused by community-acquired methicillin-resistant Staphylococcus aureus. Clin Infect Dis 2008, 46(SUPPL 5):S368-377.
    • (2008) Clin Infect Dis , vol.46 , Issue.SUPPL. 5
    • Stryjewski, M.E.1    Chambers, H.F.2
  • 6
    • 38549160590 scopus 로고    scopus 로고
    • Targeted immunotherapy for staphylococcal infections: focus on anti-MSCRAMM antibodies
    • 10.2165/00063030-200822010-00003, 18215088
    • Otto M. Targeted immunotherapy for staphylococcal infections: focus on anti-MSCRAMM antibodies. BioDrugs 2008, 22:27-36. 10.2165/00063030-200822010-00003, 18215088.
    • (2008) BioDrugs , vol.22 , pp. 27-36
    • Otto, M.1
  • 8
    • 35349005704 scopus 로고    scopus 로고
    • Antimicrobial resistance: it's not just for hospitals
    • 10.1001/jama.298.15.1803, 17940239
    • Bancroft EA. Antimicrobial resistance: it's not just for hospitals. JAMA 2007, 298:1803-1804. 10.1001/jama.298.15.1803, 17940239.
    • (2007) JAMA , vol.298 , pp. 1803-1804
    • Bancroft, E.A.1
  • 9
    • 79955921561 scopus 로고    scopus 로고
    • HIV/AIDS Surveillance Report
    • CDC (2007)
    • CDC (2007) HIV/AIDS Surveillance Report. Rev ed. Atlanta 2005, 17. CDC (2007).
    • (2005) Rev ed. Atlanta , vol.17
  • 10
    • 33847721832 scopus 로고    scopus 로고
    • Invasive methicillin-resistant Staphylococcus aureus infections among dialysis patients--United States
    • CDC (2007)
    • CDC (2007) Invasive methicillin-resistant Staphylococcus aureus infections among dialysis patients--United States. MMWR 2005, 56:197-199. CDC (2007).
    • (2005) MMWR , vol.56 , pp. 197-199
  • 11
    • 38849135596 scopus 로고    scopus 로고
    • Meticillin-resistant Staphylococcus aureus in animals: a review
    • 10.1016/j.tvjl.2006.11.008, 17215151
    • Leonard FC, Markey BK. Meticillin-resistant Staphylococcus aureus in animals: a review. Vet J 2008, 175:27-36. 10.1016/j.tvjl.2006.11.008, 17215151.
    • (2008) Vet J , vol.175 , pp. 27-36
    • Leonard, F.C.1    Markey, B.K.2
  • 12
    • 54049095944 scopus 로고    scopus 로고
    • Antimicrobial resistance of old and recent Staphylococcus aureus isolates from poultry: first detection of livestock-associated methicillin-resistant strain ST398
    • 10.1128/AAC.00613-08, 2565892, 18663024
    • Nemati M, Hermans K, Lipinska U, Denis O, Deplano A, Struelens M, Devriese LA, Pasmans F, Haesebrouch F. Antimicrobial resistance of old and recent Staphylococcus aureus isolates from poultry: first detection of livestock-associated methicillin-resistant strain ST398. Antimicrob Agents Chemother 2008, 52:3817-3819. 10.1128/AAC.00613-08, 2565892, 18663024.
    • (2008) Antimicrob Agents Chemother , vol.52 , pp. 3817-3819
    • Nemati, M.1    Hermans, K.2    Lipinska, U.3    Denis, O.4    Deplano, A.5    Struelens, M.6    Devriese, L.A.7    Pasmans, F.8    Haesebrouch, F.9
  • 13
    • 67649561829 scopus 로고    scopus 로고
    • The Biofilm and Distributed Genome Paradigms Provide a New Theoretical Structure for Understanding Chronic Bacterial Infections
    • American Society for Microbiology
    • Ehrlich GD. The Biofilm and Distributed Genome Paradigms Provide a New Theoretical Structure for Understanding Chronic Bacterial Infections. 41st Interscience Conference on Antimicrobial Agents and Chemotherapy. Chicago, IL 2001 2001, 524. American Society for Microbiology.
    • (2001) 41st Interscience Conference on Antimicrobial Agents and Chemotherapy. Chicago, IL 2001 , pp. 524
    • Ehrlich, G.D.1
  • 14
    • 23244464600 scopus 로고    scopus 로고
    • Bacterial plurality as a general mechanism driving persistence in chronic infections
    • 1351326, 16056021
    • Ehrlich GD, Hu FZ, Shen K, Stoodley P, Post JC. Bacterial plurality as a general mechanism driving persistence in chronic infections. Clin Orthop Relat Res 2005, 437:20-24. 1351326, 16056021.
    • (2005) Clin Orthop Relat Res , vol.437 , pp. 20-24
    • Ehrlich, G.D.1    Hu, F.Z.2    Shen, K.3    Stoodley, P.4    Post, J.C.5
  • 15
    • 39049092784 scopus 로고    scopus 로고
    • Population-level virulence factors amongst pathogenic bacteria: relation to infection outcome
    • Hu FZ, Ehrlich GD. Population-level virulence factors amongst pathogenic bacteria: relation to infection outcome. Future Microbio 2008, 3:31-42.
    • (2008) Future Microbio , vol.3 , pp. 31-42
    • Hu, F.Z.1    Ehrlich, G.D.2
  • 21
    • 36549029848 scopus 로고    scopus 로고
    • Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
    • 10.1186/gb-2007-8-6-r103, 2394751, 17550610
    • Hogg JS, Hu FZ, Janto B, Boissy R, Hayes J, Keefe R, Post JC, Ehrlich GD. Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol 2007, 8:R103. 10.1186/gb-2007-8-6-r103, 2394751, 17550610.
    • (2007) Genome Biol , vol.8
    • Hogg, J.S.1    Hu, F.Z.2    Janto, B.3    Boissy, R.4    Hayes, J.5    Keefe, R.6    Post, J.C.7    Ehrlich, G.D.8
  • 23
    • 77950671568 scopus 로고    scopus 로고
    • Pan-genome analysis provides much higher strain typing resolution than does MLST
    • 10.1099/mic.0.035188-0, 2889442, 20019077
    • Hall BG, Ehrlich GD, Hu FZ. Pan-genome analysis provides much higher strain typing resolution than does MLST. Microbiology 2010, 156:1060-1068. 10.1099/mic.0.035188-0, 2889442, 20019077.
    • (2010) Microbiology , vol.156 , pp. 1060-1068
    • Hall, B.G.1    Ehrlich, G.D.2    Hu, F.Z.3
  • 27
    • 3543097981 scopus 로고    scopus 로고
    • Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems
    • 10.1093/bioinformatics/bth126, 14962922
    • Grasso C, Lee C. Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. Bioinformatics 2004, 20:1546-1556. 10.1093/bioinformatics/bth126, 14962922.
    • (2004) Bioinformatics , vol.20 , pp. 1546-1556
    • Grasso, C.1    Lee, C.2
  • 30
    • 0035902534 scopus 로고    scopus 로고
    • Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic
    • Fitzgerald JR, Sturdevant DE, Mackie SM, Gill SR, Musser JM. Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic. Proc Natal Acad Sci USA 2001, 98:8821-8826.
    • (2001) Proc Natal Acad Sci USA , vol.98 , pp. 8821-8826
    • Fitzgerald, J.R.1    Sturdevant, D.E.2    Mackie, S.M.3    Gill, S.R.4    Musser, J.M.5
  • 32
    • 77958479691 scopus 로고    scopus 로고
    • Evolutionary dynamics of complete Campylobacter Pan-Genomes and the bacterial species concept
    • 10.1093/gbe/evq048, 2940326, 20688752
    • Lefebure T, Pavinski Bitar PD, Suzuki H, Stanhope MJ. Evolutionary dynamics of complete Campylobacter Pan-Genomes and the bacterial species concept. Genome Biology and Evolution 2010, 2:646-655. 10.1093/gbe/evq048, 2940326, 20688752.
    • (2010) Genome Biology and Evolution , vol.2 , pp. 646-655
    • Lefebure, T.1    Pavinski Bitar, P.D.2    Suzuki, H.3    Stanhope, M.J.4
  • 34
    • 17044437752 scopus 로고    scopus 로고
    • The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
    • 10.1073/pnas.0501140102, 556006, 15788529
    • Kwan T, Liu J, DuBow M, Gros P, Pelletier J. The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci USA 2005, 102:5174-5179. 10.1073/pnas.0501140102, 556006, 15788529.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5174-5179
    • Kwan, T.1    Liu, J.2    DuBow, M.3    Gros, P.4    Pelletier, J.5
  • 36
    • 42549144495 scopus 로고    scopus 로고
    • Molecular correlates of host specialization in Staphylococcus aureus
    • 10.1371/journal.pone.0001120, 2040198, 17971880
    • Herron-Olson L, Fitzgerald JR, Musser JM, Kapur V. Molecular correlates of host specialization in Staphylococcus aureus. PloS One 2007, 2:e1120. 10.1371/journal.pone.0001120, 2040198, 17971880.
    • (2007) PloS One , vol.2
    • Herron-Olson, L.1    Fitzgerald, J.R.2    Musser, J.M.3    Kapur, V.4
  • 37
    • 34848880455 scopus 로고    scopus 로고
    • Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling
    • 1976330, 17941709
    • Halpern D, Chiapello H, Schbath S, Robin S, Hennequet-Antier C, Gruss A, El Karoui M. Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling. PLoS Genet 2007, 3:1614-1621. 1976330, 17941709.
    • (2007) PLoS Genet , vol.3 , pp. 1614-1621
    • Halpern, D.1    Chiapello, H.2    Schbath, S.3    Robin, S.4    Hennequet-Antier, C.5    Gruss, A.6    El Karoui, M.7
  • 38
    • 33746631363 scopus 로고    scopus 로고
    • Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages
    • 10.1128/JB.00418-06, 1540015, 16855248
    • Waldron DE, Lindsay JA. Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. J Bacteriol 2006, 188:5578-5585. 10.1128/JB.00418-06, 1540015, 16855248.
    • (2006) J Bacteriol , vol.188 , pp. 5578-5585
    • Waldron, D.E.1    Lindsay, J.A.2
  • 40
    • 0023882245 scopus 로고
    • Characterization of the conjugation system associated with the Staphylococcus aureus plasmid pJE1
    • Evans J, Dyke KG. Characterization of the conjugation system associated with the Staphylococcus aureus plasmid pJE1. J Gen Microbiol 1988, 134:1-8.
    • (1988) J Gen Microbiol , vol.134 , pp. 1-8
    • Evans, J.1    Dyke, K.G.2
  • 41
    • 17644379901 scopus 로고    scopus 로고
    • Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci
    • 10.1111/j.1365-2958.2005.04584.x, 15819636
    • Ubeda C, Maiques E, Knecht E, Lasa I, Novick RP, Penadés JR. Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci. Mol Microbiol 2005, 56:836-844. 10.1111/j.1365-2958.2005.04584.x, 15819636.
    • (2005) Mol Microbiol , vol.56 , pp. 836-844
    • Ubeda, C.1    Maiques, E.2    Knecht, E.3    Lasa, I.4    Novick, R.P.5    Penadés, J.R.6
  • 42
    • 54449092082 scopus 로고    scopus 로고
    • Drug interactions modulate the potential for evolution of resistance
    • 10.1073/pnas.0800944105, 2567468, 18815368
    • Michel J, Yeh PJ, Chait R, Moellering RC, Kishony R. Drug interactions modulate the potential for evolution of resistance. Proc Natl Acad Sci USA 2008, 105:14918-14923. 10.1073/pnas.0800944105, 2567468, 18815368.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14918-14923
    • Michel, J.1    Yeh, P.J.2    Chait, R.3    Moellering, R.C.4    Kishony, R.5
  • 43
    • 68249108837 scopus 로고    scopus 로고
    • Positive epistasis drives the acquisition of multidrug resistance
    • 10.1371/journal.pgen.1000578, 2706973, 19629166
    • Trindade S, Sousa A, Xavier KB, Dionisio F, Ferreira MG, Gordo I. Positive epistasis drives the acquisition of multidrug resistance. PLoS Genet 2009, 5:e1000578. 10.1371/journal.pgen.1000578, 2706973, 19629166.
    • (2009) PLoS Genet , vol.5
    • Trindade, S.1    Sousa, A.2    Xavier, K.B.3    Dionisio, F.4    Ferreira, M.G.5    Gordo, I.6
  • 45
    • 35748980547 scopus 로고    scopus 로고
    • Antibiotic resistant Staphylococcus aureus: a paradigm of adaptive power
    • 10.1016/j.mib.2007.08.003, 2701899, 17921044
    • de Lencastre H, Oliveira D, Tomasz A. Antibiotic resistant Staphylococcus aureus: a paradigm of adaptive power. Curr Opin Microbiol 2007, 10:428-435. 10.1016/j.mib.2007.08.003, 2701899, 17921044.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 428-435
    • de Lencastre, H.1    Oliveira, D.2    Tomasz, A.3
  • 46
    • 51649114043 scopus 로고    scopus 로고
    • Progress towards understanding the fate of plasmids in bacterial communities
    • 10.1111/j.1574-6941.2008.00505.x, 18507680
    • Slater FR, Bailey MJ, Tett AJ, Turner SL. Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiol Ecol 2008, 66:3-13. 10.1111/j.1574-6941.2008.00505.x, 18507680.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 3-13
    • Slater, F.R.1    Bailey, M.J.2    Tett, A.J.3    Turner, S.L.4
  • 47
    • 48749118803 scopus 로고    scopus 로고
    • Direct demonstration of viable Staphylococcus aureus biofilms in an infected total joint arthroplasty. A case report
    • 10.2106/JBJS.G.00838, 2729478, 18676908
    • Stoodley P, Nistico L, Johnson S, Lasko L, Baratz M, Gahlot V, Ehrlich GD, Kathju S. Direct demonstration of viable Staphylococcus aureus biofilms in an infected total joint arthroplasty. A case report. J Bone Joint Surg Am 2008, 90:1751-1758. 10.2106/JBJS.G.00838, 2729478, 18676908.
    • (2008) J Bone Joint Surg Am , vol.90 , pp. 1751-1758
    • Stoodley, P.1    Nistico, L.2    Johnson, S.3    Lasko, L.4    Baratz, M.5    Gahlot, V.6    Ehrlich, G.D.7    Kathju, S.8
  • 48
    • 0033990061 scopus 로고    scopus 로고
    • Flexible sequence similarity searching with the FASTA3 program package
    • Pearson WR. Flexible sequence similarity searching with the FASTA3 program package. Methods Mol Biol 2000, 132:185-219.
    • (2000) Methods Mol Biol , vol.132 , pp. 185-219
    • Pearson, W.R.1


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