메뉴 건너뛰기




Volumn 22, Issue 2, 2016, Pages 169-174

Cracking the epitranscriptome

Author keywords

Epitranscriptome; N6 methyladenosine; Review

Indexed keywords

6 N METHYLADENOSINE; EPITRANSCRIPTOME; MESSENGER RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG; ADENOSINE; N(6)-METHYLADENOSINE;

EID: 84956842392     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.054502.115     Document Type: Review
Times cited : (69)

References (68)
  • 1
    • 84864037029 scopus 로고    scopus 로고
    • RNA methylation by the MIS complex regulates a cell fate decision in yeast
    • Agarwala S, Blitzblau H, Hochwagen A, Fink G. 2012. RNA methylation by the MIS complex regulates a cell fate decision in yeast. PLoS Genet 8: E1002732.
    • (2012) PLoS Genet , vol.8 , pp. e1002732
    • Agarwala, S.1    Blitzblau, H.2    Hochwagen, A.3    Fink, G.4
  • 2
    • 84941424170 scopus 로고    scopus 로고
    • HNRNPA2B1 is a mediator of m6A-dependent nuclear RNA processing events
    • Alarcón CR, Goodarzi H, Lee H, Liu X, Tavazoie S, Tavazoie SF. 2015a. HNRNPA2B1 is a mediator of m6A-dependent nuclear RNA processing events. Cell 162: 1299-1308.
    • (2015) Cell , vol.162 , pp. 1299-1308
    • Alarcón, C.R.1    Goodarzi, H.2    Lee, H.3    Liu, X.4    Tavazoie, S.5    Tavazoie, S.F.6
  • 4
    • 0036529621 scopus 로고    scopus 로고
    • Comparative genomics and evolution of proteins involved in RNA metabolism
    • Anantharaman V, Koonin EV, Aravind L. 2002. Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res 30: 1427-1464.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1427-1464
    • Anantharaman, V.1    Koonin, E.V.2    Aravind, L.3
  • 7
    • 11144245522 scopus 로고    scopus 로고
    • Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae
    • Behm-Ansmant I, Grosjean H, Massenet S, Motorin Y, Branlant C. 2004. Pseudouridylation at position 32 of mitochondrial and cytoplasmic tRNAs requires two distinct enzymes in Saccharomyces cerevisiae. J Biol Chem 279: 52998-53006.
    • (2004) J Biol Chem , vol.279 , pp. 52998-53006
    • Behm-Ansmant, I.1    Grosjean, H.2    Massenet, S.3    Motorin, Y.4    Branlant, C.5
  • 8
    • 84891485596 scopus 로고    scopus 로고
    • Adenosine methylation in Arabidopsis mRNA is associated with the 3' end and reduced levels cause developmental defects
    • Bodi Z, Zhong S, Mehra S, Song J, Graham N, Li H, May S, Fray RG. 2012. Adenosine methylation in Arabidopsis mRNA is associated with the 3' end and reduced levels cause developmental defects. Front Plant Sci 3: 48.
    • (2012) Front Plant Sci , vol.3 , pp. 48
    • Bodi, Z.1    Zhong, S.2    Mehra, S.3    Song, J.4    Graham, N.5    Li, H.6    May, S.7    Fray, R.G.8
  • 10
    • 82255168340 scopus 로고    scopus 로고
    • The biosynthesis and functional roles of methylated nucleosides in eukaryotic mRNA
    • (ed. Grosjean H). Springer-Verlag, Berlin/Heidelberg
    • Bokar JA. 2005. The biosynthesis and functional roles of methylated nucleosides in eukaryotic mRNA. In Fine-Tuning of RNA functions by modification and editing (ed. Grosjean H), Vol. 12, pp. 141-177. Springer-Verlag, Berlin/Heidelberg.
    • (2005) Fine-Tuning of RNA Functions by Modification and Editing , vol.12 , pp. 141-177
    • Bokar, J.A.1
  • 12
  • 15
    • 0345981608 scopus 로고
    • Nucleoside-5'-phosphates from ribonucleic acid
    • Cohn WE, Volkin E. 1951. Nucleoside-5'-phosphates from ribonucleic acid. Nature 167: 483-484.
    • (1951) Nature , vol.167 , pp. 483-484
    • Cohn, W.E.1    Volkin, E.2
  • 17
    • 0000568977 scopus 로고
    • Ribonucleic acids from yeast which contain a fifth nucleotide
    • Davis FF, Allen FW. 1957. Ribonucleic acids from yeast which contain a fifth nucleotide. J Biol Chem 227: 907-915.
    • (1957) J Biol Chem , vol.227 , pp. 907-915
    • Davis, F.F.1    Allen, F.W.2
  • 18
    • 0016285746 scopus 로고
    • Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells
    • Desrosiers R, Friderici K, Rottman F. 1974. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells. Proc Natl Acad Sci 71: 3971-3975.
    • (1974) Proc Natl Acad Sci , vol.71 , pp. 3971-3975
    • Desrosiers, R.1    Friderici, K.2    Rottman, F.3
  • 20
    • 84879642219 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs
    • Edelheit S, Schwartz S, Mumbach MR, Wurtzel O, Sorek R. 2013. Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs. PLoS Genet 9: E1003602.
    • (2013) PLoS Genet , vol.9 , pp. e1003602
    • Edelheit, S.1    Schwartz, S.2    Mumbach, M.R.3    Wurtzel, O.4    Sorek, R.5
  • 24
    • 0342385139 scopus 로고
    • Methylation and processing of ribosomal RNA in HeLa cells
    • Greenberg H, Penman S. 1966. Methylation and processing of ribosomal RNA in HeLa cells. J Mol Biol 21: 527-535.
    • (1966) J Mol Biol , vol.21 , pp. 527-535
    • Greenberg, H.1    Penman, S.2
  • 26
    • 78649267733 scopus 로고    scopus 로고
    • Grand challenge commentary: RNA epigenetics?
    • He C. 2010. Grand challenge commentary: RNA epigenetics? Nat Chem Biol 6: 863-865.
    • (2010) Nat Chem Biol , vol.6 , pp. 863-865
    • He, C.1
  • 29
    • 80052601644 scopus 로고    scopus 로고
    • Drosophila inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis
    • Hongay CF, Orr-Weaver TL. 2011. Drosophila inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis. Proc Natl Acad Sci 108: 14855-14860.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 14855-14860
    • Hongay, C.F.1    Orr-Weaver, T.L.2
  • 31
    • 84887833997 scopus 로고    scopus 로고
    • Identification of Wilms' tumor 1-Associating protein complex and its role in alternative splicing and the cell cycle
    • Horiuchi K, Kawamura T, Iwanari H, Ohashi R, Naito M, Kodama T, Hamakubo T. 2013. Identification of Wilms' tumor 1-Associating protein complex and its role in alternative splicing and the cell cycle. J Biol Chem 288: 33292-33302.
    • (2013) J Biol Chem , vol.288 , pp. 33292-33302
    • Horiuchi, K.1    Kawamura, T.2    Iwanari, H.3    Ohashi, R.4    Naito, M.5    Kodama, T.6    Hamakubo, T.7
  • 34
    • 84939875534 scopus 로고    scopus 로고
    • The expression of PHO92 is regulated by Gcr1, and Pho92 is involved in glucose metabolism in Saccharomyces cerevisiae
    • Kang H-J, Chang M, Kang C-M, Park Y-S, Yoon B-J, Kim T-H, Yun CW. 2014. The expression of PHO92 is regulated by Gcr1, and Pho92 is involved in glucose metabolism in Saccharomyces cerevisiae. Curr Genet 60: 247-253.
    • (2014) Curr Genet , vol.60 , pp. 247-253
    • Kang, H.-J.1    Chang, M.2    Kang, C.-M.3    Park, Y.-S.4    Yoon, B.-J.5    Kim, T.-H.6    Yun, C.W.7
  • 36
    • 84877350071 scopus 로고    scopus 로고
    • Identification of direct targets and modified bases of RNA cytosine methyltransferases
    • Khoddami V, Cairns BR. 2013. Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat Biotechnol 31: 458-464.
    • (2013) Nat Biotechnol , vol.31 , pp. 458-464
    • Khoddami, V.1    Cairns, B.R.2
  • 37
    • 0016692308 scopus 로고
    • Methylated simian virus 40-specific RNA from nuclei and cytoplasm of infected BSC-1 cells
    • Lavi S, Shatkin AJ. 1975. Methylated simian virus 40-specific RNA from nuclei and cytoplasm of infected BSC-1 cells. Proc Natl Acad Sci 72: 2012-2016.
    • (1975) Proc Natl Acad Sci , vol.72 , pp. 2012-2016
    • Lavi, S.1    Shatkin, A.J.2
  • 39
    • 84927581675 scopus 로고    scopus 로고
    • Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition
    • Li F, Zhao D, Wu J, Shi Y. 2014. Structure of the YTH domain of human YTHDF2 in complex with an m6A mononucleotide reveals an aromatic cage for m6A recognition. Cell Res 24: 1490-1492.
    • (2014) Cell Res , vol.24 , pp. 1490-1492
    • Li, F.1    Zhao, D.2    Wu, J.3    Shi, Y.4
  • 42
    • 84888423912 scopus 로고    scopus 로고
    • 6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
    • 6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA 19: 1848-1856.
    • (2013) RNA , vol.19 , pp. 1848-1856
    • Liu, N.1    Parisien, M.2    Dai, Q.3    Zheng, G.4    He, C.5    Pan, T.6
  • 43
    • 84924072927 scopus 로고    scopus 로고
    • 6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
    • 6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature 518: 560-564.
    • (2015) Nature , vol.518 , pp. 560-564
    • Liu, N.1    Dai, Q.2    Zheng, G.3    He, C.4    Parisien, M.5    Pan, T.6
  • 44
    • 84908626586 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of pseudouridines: Pseudouridine synthases modify specific mRNAs in S cerevisiae
    • Lovejoy AF, Riordan DP, Brown PO. 2014. Transcriptome-wide mapping of pseudouridines: Pseudouridine synthases modify specific mRNAs in S. cerevisiae. PLoS One 9: E110799.
    • (2014) PLoS One , vol.9 , pp. e110799
    • Lovejoy, A.F.1    Riordan, D.P.2    Brown, P.O.3
  • 47
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
    • Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR. 2012. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149: 1635-1646.
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.E.5    Jaffrey, S.R.6
  • 49
    • 0016373910 scopus 로고
    • Existence of methylated messenger RNA in mouse L cells
    • Perry RP, Kelley DE. 1974. Existence of methylated messenger RNA in mouse L cells. Cell 1: 37-42.
    • (1974) Cell , vol.1 , pp. 37-42
    • Perry, R.P.1    Kelley, D.E.2
  • 55
    • 0026561541 scopus 로고
    • IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae
    • Shah JC, Clancy MJ. 1992. IME4, a gene that mediates MAT and nutritional control of meiosis in Saccharomyces cerevisiae. Mol Cell Biol 12: 1078-1086.
    • (1992) Mol Cell Biol , vol.12 , pp. 1078-1086
    • Shah, J.C.1    Clancy, M.J.2
  • 58
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
    • Tollervey D, Lehtonen H, Jansen R, Kern H, Hurt EC. 1993. Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72: 443-457.
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 62
    • 0016770156 scopus 로고
    • Methylated nucleotides block 5' terminus of HeLa cell messenger RNA
    • Wei CM, Gershowitz A, Moss B. 1975. Methylated nucleotides block 5' terminus of HeLa cell messenger RNA. Cell 4: 379-386.
    • (1975) Cell , vol.4 , pp. 379-386
    • Wei, C.M.1    Gershowitz, A.2    Moss, B.3
  • 63
    • 0017296194 scopus 로고
    • 5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA
    • Wei CM, Gershowitz A, Moss B. 1976. 5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA. Biochemistry 15: 397-401.
    • (1976) Biochemistry , vol.15 , pp. 397-401
    • Wei, C.M.1    Gershowitz, A.2    Moss, B.3
  • 64
    • 0032718276 scopus 로고    scopus 로고
    • Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA
    • Zebarjadian Y, King T, Fournier MJ, Clarke L, Carbon J. 1999. Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA. Mol Cell Biol 19: 7461-7472.
    • (1999) Mol Cell Biol , vol.19 , pp. 7461-7472
    • Zebarjadian, Y.1    King, T.2    Fournier, M.J.3    Clarke, L.4    Carbon, J.5
  • 67
    • 57749089784 scopus 로고    scopus 로고
    • MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor
    • Zhong S, Li H, Bodi Z, Button J, Vespa L, Herzog M, Fray RG. 2008. MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor. Plant Cell 20: 1278-1288.
    • (2008) Plant Cell , vol.20 , pp. 1278-1288
    • Zhong, S.1    Li, H.2    Bodi, Z.3    Button, J.4    Vespa, L.5    Herzog, M.6    Fray, R.G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.