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Volumn 12, Issue 1, 2016, Pages

A Highly Conserved Bacterial D-Serine Uptake System Links Host Metabolism and Virulence

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; DEXTRO SERINE; TRANSCRIPTOME; ESCHERICHIA COLI PROTEIN; SERINE; TYPE III SECRETION SYSTEM;

EID: 84956794227     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1005359     Document Type: Article
Times cited : (50)

References (80)
  • 2
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344. doi: 10.1371/journal.pgen.1000344 19165319
    • (2009) PLoS Genet , vol.5 , pp. 1000344
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3    Barbe, V.4    Baeriswyl, S.5
  • 3
    • 78149408759 scopus 로고    scopus 로고
    • Survival of Escherichia coli in the environment: fundamental and public health aspects
    • Van Elsas JD, Semenov A V, Costa R, Trevors JT, (2011) Survival of Escherichia coli in the environment: fundamental and public health aspects. ISME J 5: 173–183. doi: 10.1038/ismej.2010.80 20574458
    • (2011) ISME J , vol.5 , pp. 173-183
    • Van Elsas, J.D.1    Semenov, A.V.2    Costa, R.3    Trevors, J.T.4
  • 4
    • 84884930971 scopus 로고    scopus 로고
    • Recent advances in understanding enteric pathogenic Escherichia coli
    • Croxen MA, Law RJ, Scholz R, Keeney KM, Wlodarska M, et al. (2013) Recent advances in understanding enteric pathogenic Escherichia coli. Clin Microbiol Rev 26: 822–880. doi: 10.1128/CMR.00022-13 24092857
    • (2013) Clin Microbiol Rev , vol.26 , pp. 822-880
    • Croxen, M.A.1    Law, R.J.2    Scholz, R.3    Keeney, K.M.4    Wlodarska, M.5
  • 5
    • 73949118739 scopus 로고    scopus 로고
    • Molecular mechanisms of Escherichia coli pathogenicity
    • Croxen MA, Finlay BB, (2010) Molecular mechanisms of Escherichia coli pathogenicity. Nat Rev Microbiol 8: 26–38. doi: 10.1038/nrmicro2265 19966814
    • (2010) Nat Rev Microbiol , vol.8 , pp. 26-38
    • Croxen, M.A.1    Finlay, B.B.2
  • 6
    • 84866915086 scopus 로고    scopus 로고
    • Uropathogenic Escherichia coli mediated urinary tract infection
    • Totsika M, Gomes Moriel D, Idris A, A Rogers B, J Wurpel D, et al. (2012) Uropathogenic Escherichia coli mediated urinary tract infection. Curr Drug Targets 13: 1386–1399. doi: 10.2174/138945012803530206 22664092
    • (2012) Curr Drug Targets , vol.13 , pp. 1386-1399
    • Totsika, M.1    Gomes, M.D.2    Idris, A.3    Rogers, B.4    Wurpel, D.5
  • 7
    • 46749131414 scopus 로고    scopus 로고
    • Origins and Virulence Mechanisms of Uropathogenic Escherichia coli
    • Wiles TJ, Kulesus RR, Mulvey MA, (2009) Origins and Virulence Mechanisms of Uropathogenic Escherichia coli. Exp Mol Pathol 85: 11–19. doi: 10.1016/j.yexmp.2008.03.007.Origins
    • (2009) Exp Mol Pathol , vol.85 , pp. 11-19
    • Wiles, T.J.1    Kulesus, R.R.2    Mulvey, M.A.3
  • 8
    • 80855136698 scopus 로고    scopus 로고
    • Type 1 Fimbrial Adhesin FimH Elicits an Immune Response That Enhances Cell Adhesion of Escherichia coli
    • Tchesnokova V, Aprikian P, Kisiela D, Gowey S, Korotkova N, et al. (2011) Type 1 Fimbrial Adhesin FimH Elicits an Immune Response That Enhances Cell Adhesion of Escherichia coli. Infect Immun 79: 3895–3904. doi: 10.1128/IAI.05169-11 21768279
    • (2011) Infect Immun , vol.79 , pp. 3895-3904
    • Tchesnokova, V.1    Aprikian, P.2    Kisiela, D.3    Gowey, S.4    Korotkova, N.5
  • 9
    • 84936994010 scopus 로고    scopus 로고
    • From ingestion to colonization: the influence of the host environment on regulation of the LEE encoded type III secretion system in enterohaemorrhagic Escherichia coli
    • Connolly JPR, Finlay BB, Roe AJ, (2015) From ingestion to colonization: the influence of the host environment on regulation of the LEE encoded type III secretion system in enterohaemorrhagic Escherichia coli. Front Microbiol 6: 568. doi: 10.3389/fmicb.2015.00568 26097473
    • (2015) Front Microbiol , vol.6 , pp. 568
    • Connolly, J.P.R.1    Finlay, B.B.2    Roe, A.J.3
  • 10
    • 0037371268 scopus 로고    scopus 로고
    • Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host
    • Naylor SW, Low JC, Besser TE, Mahajan A, Gunn GJ, et al. (2003) Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host. Infect Immun 71: 1505–1512. doi: 10.1128/IAI.71.3.1505–1512.2003 12595469
    • (2003) Infect Immun , vol.71 , pp. 1505-1512
    • Naylor, S.W.1    Low, J.C.2    Besser, T.E.3    Mahajan, A.4    Gunn, G.J.5
  • 12
    • 84870501494 scopus 로고    scopus 로고
    • Fucose sensing regulates bacterial intestinal colonization
    • Pacheco AR, Curtis MM, Ritchie JM, Munera D, Waldor MK, et al. (2012) Fucose sensing regulates bacterial intestinal colonization. Nature 492: 113–117. doi: 10.1038/nature11623 23160491
    • (2012) Nature , vol.492 , pp. 113-117
    • Pacheco, A.R.1    Curtis, M.M.2    Ritchie, J.M.3    Munera, D.4    Waldor, M.K.5
  • 13
    • 84863449360 scopus 로고    scopus 로고
    • Ethanolamine controls expression of genes encoding components involved in interkingdom signaling and virulence in enterohemorrhagic Escherichia coli O157:H7
    • Kendall MM, Gruber CC, Parker CT, Sperandio V, (2012) Ethanolamine controls expression of genes encoding components involved in interkingdom signaling and virulence in enterohemorrhagic Escherichia coli O157:H7. MBio 3: e00050–12. doi: 10.1128/mBio.00050-12 22589288
    • (2012) MBio , vol.3 , pp. 12-50
    • Kendall, M.M.1    Gruber, C.C.2    Parker, C.T.3    Sperandio, V.4
  • 14
    • 84925278299 scopus 로고    scopus 로고
    • Enterohemorrhagic Escherichia coli senses low biotin status in the large intestine for colonization and infection
    • Yang B, Feng L, Wang F, Wang L, (2015) Enterohemorrhagic Escherichia coli senses low biotin status in the large intestine for colonization and infection. Nat Commun 6: 6592. doi: 10.1038/ncomms7592 25791315
    • (2015) Nat Commun , vol.6 , pp. 6592
    • Yang, B.1    Feng, L.2    Wang, F.3    Wang, L.4
  • 15
    • 0028945803 scopus 로고
    • A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens
    • McDaniel TK, Jarvis KG, Donnenberg MS, Kaper JB, (1995) A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. Proc Natl Acad Sci U S A 92: 1664–1668. doi: 10.1073/pnas.92.5.1664 7878036
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 1664-1668
    • McDaniel, T.K.1    Jarvis, K.G.2    Donnenberg, M.S.3    Kaper, J.B.4
  • 16
    • 0031895930 scopus 로고    scopus 로고
    • The complete sequence of the locus of enterocyte effacement (LEE) from enteropathogenic Escherichia
    • Elliott SJ, Wainwright LA, Timothy K, Jarvis KG, Deng Y, et al. (1998) The complete sequence of the locus of enterocyte effacement (LEE) from enteropathogenic Escherichia. Mol Microbiol 28: 1–4. 9593291
    • (1998) Mol Microbiol , vol.28 , pp. 1-4
    • Elliott, S.J.1    Wainwright, L.A.2    Timothy, K.3    Jarvis, K.G.4    Deng, Y.5
  • 17
    • 0032998631 scopus 로고    scopus 로고
    • The Per regulon of enteropathogenic Escherichia coli: identification of a regulatory cascade and a novel transcriptional activator, the locus of enterocyte effacement (LEE)-encoded regulator (Ler)
    • Mellies JL, Elliott SJ, Sperandio V, Donnenberg MS, Kaper JB, (1999) The Per regulon of enteropathogenic Escherichia coli: identification of a regulatory cascade and a novel transcriptional activator, the locus of enterocyte effacement (LEE)-encoded regulator (Ler). Mol Microbiol 33: 296–306. 10411746
    • (1999) Mol Microbiol , vol.33 , pp. 296-306
    • Mellies, J.L.1    Elliott, S.J.2    Sperandio, V.3    Donnenberg, M.S.4    Kaper, J.B.5
  • 18
    • 0037218281 scopus 로고    scopus 로고
    • Interaction of Ler at the LEE5 (tir) operon of enteropathogenic Escherichia coli
    • Haack KR, Robinson CL, Miller KJ, Fowlkes JW, Mellies JL, (2003) Interaction of Ler at the LEE5 (tir) operon of enteropathogenic Escherichia coli. Infect Immun 71: 384–392. 12496188
    • (2003) Infect Immun , vol.71 , pp. 384-392
    • Haack, K.R.1    Robinson, C.L.2    Miller, K.J.3    Fowlkes, J.W.4    Mellies, J.L.5
  • 19
    • 0035045615 scopus 로고    scopus 로고
    • Transcriptional regulation of the orf19 gene and the tir-cesT-eae operon of enteropathogenic Escherichia coli
    • Sánchez-SanMartín C, Bustamante VH, Calva E, Puente JL, (2001) Transcriptional regulation of the orf19 gene and the tir-cesT-eae operon of enteropathogenic Escherichia coli. J Bacteriol 183: 2823–2833. doi: 10.1128/JB.183.9.2823–2833.2001 11292802
    • (2001) J Bacteriol , vol.183 , pp. 2823-2833
    • Sánchez-SanMartín, C.1    Bustamante, V.H.2    Calva, E.3    Puente, J.L.4
  • 20
    • 12144289554 scopus 로고    scopus 로고
    • Dissecting virulence: Systematic and functional analyses of a pathogenicity island
    • Deng W, Puente JL, Gruenheid S, Li Y, Vallance BA, et al. (2004) Dissecting virulence: Systematic and functional analyses of a pathogenicity island. Proc Natl Acad Sci U S A 101: 3597–3602. 14988506
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 3597-3602
    • Deng, W.1    Puente, J.L.2    Gruenheid, S.3    Li, Y.4    Vallance, B.A.5
  • 21
    • 84925130449 scopus 로고    scopus 로고
    • The host metabolite D-serine contributes to bacterial niche specificity through gene selection
    • Connolly JPR, Goldstone RJ, Burgess K, Cogdell RJ, Beatson SA, et al. (2015) The host metabolite D-serine contributes to bacterial niche specificity through gene selection. ISME J 9: 1039–1051. doi: 10.1038/ismej.2014.242 25526369
    • (2015) ISME J , vol.9 , pp. 1039-1051
    • Connolly, J.P.R.1    Goldstone, R.J.2    Burgess, K.3    Cogdell, R.J.4    Beatson, S.A.5
  • 22
    • 0038723388 scopus 로고    scopus 로고
    • Uropathogenic Escherichia coli use D-serine deaminase to modulate infection of the murine urinary tract
    • Roesch PL, Redford P, Batchelet S, Moritz RL, Pellett S, et al. (2003) Uropathogenic Escherichia coli use D-serine deaminase to modulate infection of the murine urinary tract. Mol Microbiol 49: 55–67. doi: 10.1046/j.1365-2958.2003.03543.x 12823810
    • (2003) Mol Microbiol , vol.49 , pp. 55-67
    • Roesch, P.L.1    Redford, P.2    Batchelet, S.3    Moritz, R.L.4    Pellett, S.5
  • 23
    • 33748761151 scopus 로고    scopus 로고
    • DsdX is the second D-serine transporter in uropathogenic Escherichia coli clinical isolate CFT073
    • Anfora AT, Welch RA, (2006) DsdX is the second D-serine transporter in uropathogenic Escherichia coli clinical isolate CFT073. J Bacteriol 188: 6622–6628. doi: 10.1128/JB.00634-06 16952954
    • (2006) J Bacteriol , vol.188 , pp. 6622-6628
    • Anfora, A.T.1    Welch, R.A.2
  • 24
    • 35649023207 scopus 로고    scopus 로고
    • Roles of serine accumulation and catabolism in the colonization of the murine urinary tract by Escherichia coli CFT073
    • Anfora AT, Haugen BJ, Roesch P, Redford P, Welch RA, (2007) Roles of serine accumulation and catabolism in the colonization of the murine urinary tract by Escherichia coli CFT073. Infect Immun 75: 5298–5304. doi: 10.1128/IAI.00652-07 17785472
    • (2007) Infect Immun , vol.75 , pp. 5298-5304
    • Anfora, A.T.1    Haugen, B.J.2    Roesch, P.3    Redford, P.4    Welch, R.A.5
  • 25
    • 0005162179 scopus 로고
    • Deamination of serine. II. D-Serine dehydrase, a vitamin B6 enzyme from Escherichia coli
    • Metzler DE, Snell EE, (1952) Deamination of serine. II. D-Serine dehydrase, a vitamin B6 enzyme from Escherichia coli. J Biol Chem 198: 363–373. 12999751
    • (1952) J Biol Chem , vol.198 , pp. 363-373
    • Metzler, D.E.1    Snell, E.E.2
  • 26
    • 0028848116 scopus 로고
    • Organization and transcriptional regulation of the Escherichia coli K-12 D-serine tolerance locus. These include: Organization and Transcriptional Regulation of the Escherichia coli K-12 D -Serine Tolerance Locus
    • Nørregaard-madsen M, Fall EMC, (1995) Organization and transcriptional regulation of the Escherichia coli K-12 D-serine tolerance locus. These include: Organization and Transcriptional Regulation of the Escherichia coli K-12 D -Serine Tolerance Locus. J Bacteriol 177: 6456–6461. 7592420
    • (1995) J Bacteriol , vol.177 , pp. 6456-6461
    • Nørregaard-madsen, M.1    Fall, E.M.C.2
  • 27
    • 33750951690 scopus 로고    scopus 로고
    • The Escherichia coli argW-dsdCXA genetic island is highly variable, and E. coli K1 strains commonly possess two copies of dsdCXA
    • Moritz RL, Welch RA, (2006) The Escherichia coli argW-dsdCXA genetic island is highly variable, and E. coli K1 strains commonly possess two copies of dsdCXA. J Clin Microbiol 44: 4038–4048. doi: 10.1128/JCM.01172-06 17088369
    • (2006) J Clin Microbiol , vol.44 , pp. 4038-4048
    • Moritz, R.L.1    Welch, R.A.2
  • 28
    • 34248993890 scopus 로고    scopus 로고
    • Analysis of the expression, regulation and export of NleA-E in Escherichia coli O157:H7
    • Roe AJ, Tysall L, Dransfield T, Wang D, Fraser-Pitt D, et al. (2007) Analysis of the expression, regulation and export of NleA-E in Escherichia coli O157:H7. Microbiology 153: 1350–1360. doi: 10.1099/mic.0.2006/003707-0 17464049
    • (2007) Microbiology , vol.153 , pp. 1350-1360
    • Roe, A.J.1    Tysall, L.2    Dransfield, T.3    Wang, D.4    Fraser-Pitt, D.5
  • 29
    • 33846805492 scopus 로고    scopus 로고
    • Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine
    • Hancock V, Klemm P, (2007) Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine. Infect Immun 75: 966–976. doi: 10.1128/IAI.01748-06 17145952
    • (2007) Infect Immun , vol.75 , pp. 966-976
    • Hancock, V.1    Klemm, P.2
  • 30
    • 58949096829 scopus 로고    scopus 로고
    • The crystal structure of the protein YhaK from Escherichia coli reveals a new subclass of redox sensitive enterobacterial bicupins
    • Gurmu D, Lu J, Johnson K a, Nordlund P, Holmgren A, et al. (2009) The crystal structure of the protein YhaK from Escherichia coli reveals a new subclass of redox sensitive enterobacterial bicupins. Proteins 74: 18–31. doi: 10.1002/prot.22128 18561187
    • (2009) Proteins , vol.74 , pp. 18-31
    • Gurmu, D.1    Lu, J.2    Johnson, K.3    Nordlund, P.4    Holmgren, A.5
  • 31
    • 0036778151 scopus 로고    scopus 로고
    • Adaptation of sucrose metabolism in the adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132
    • Jahreis K, Bentler L, Bockmann J, Meyer A, Siepelmeyer J, et al. (2002) Adaptation of sucrose metabolism in the adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132. J Bacteriol 184: 5307–5316. doi: 10.1128/JB.184.19.5307 12218016
    • (2002) J Bacteriol , vol.184 , pp. 5307-5316
    • Jahreis, K.1    Bentler, L.2    Bockmann, J.3    Meyer, A.4    Siepelmeyer, J.5
  • 32
    • 84863855436 scopus 로고    scopus 로고
    • Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli
    • Van den Beld MJC, Reubsaet FAG, (2012) Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli. Eur J Clin Microbiol Infect Dis 31: 899–904. doi: 10.1007/s10096-011-1395-7 21901636
    • (2012) Eur J Clin Microbiol Infect Dis , vol.31 , pp. 899-904
    • Van den Beld, M.J.C.1    Reubsaet, F.A.G.2
  • 33
    • 33845975655 scopus 로고    scopus 로고
    • In vivo gene expression analysis identifies genes required for enhanced colonization of the mouse urinary tract by uropathogenic Escherichia coli strain CFT073 dsdA
    • Haugen BJ, Pellett S, Redford P, Hamilton HL, Roesch PL, et al. (2007) In vivo gene expression analysis identifies genes required for enhanced colonization of the mouse urinary tract by uropathogenic Escherichia coli strain CFT073 dsdA. Infect Immun 75: 278–289. doi: 10.1128/IAI.01319-06 17074858
    • (2007) Infect Immun , vol.75 , pp. 278-289
    • Haugen, B.J.1    Pellett, S.2    Redford, P.3    Hamilton, H.L.4    Roesch, P.L.5
  • 34
    • 33746850568 scopus 로고    scopus 로고
    • An outer membrane enzyme encoded by Salmonella typhimurium lpxR that removes the 3’-acyloxyacyl moiety of lipid A
    • Reynolds CM, Ribeiro AA, McGrath SC, Cotter RJ, Raetz CRH, et al. (2006) An outer membrane enzyme encoded by Salmonella typhimurium lpxR that removes the 3’-acyloxyacyl moiety of lipid A. J Biol Chem 281: 21974–21987. doi: 10.1074/jbc.M603527200 16704973
    • (2006) J Biol Chem , vol.281 , pp. 21974-21987
    • Reynolds, C.M.1    Ribeiro, A.A.2    McGrath, S.C.3    Cotter, R.J.4    Raetz, C.R.H.5
  • 35
    • 79953306448 scopus 로고    scopus 로고
    • Easyfig: A genome comparison visualizer
    • Sullivan MJ, Petty NK, Beatson SA, (2011) Easyfig: A genome comparison visualizer. Bioinformatics 27: 1009–1010. doi: 10.1093/bioinformatics/btr039 21278367
    • (2011) Bioinformatics , vol.27 , pp. 1009-1010
    • Sullivan, M.J.1    Petty, N.K.2    Beatson, S.A.3
  • 36
    • 58949097886 scopus 로고    scopus 로고
    • Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
    • Maddocks SE, Oyston PCF, (2008) Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154: 3609–3623. doi: 10.1099/mic.0.2008/022772-0 19047729
    • (2008) Microbiology , vol.154 , pp. 3609-3623
    • Maddocks, S.E.1    Oyston, P.C.F.2
  • 37
    • 78651107124 scopus 로고    scopus 로고
    • Organization of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA
    • Islam MS, Bingle LEH, Pallen MJ, Busby SJW, (2011) Organization of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA. Mol Microbiol 79: 468–483. doi: 10.1111/j.1365-2958.2010.07460.x 21219464
    • (2011) Mol Microbiol , vol.79 , pp. 468-483
    • Islam, M.S.1    Bingle, L.E.H.2    Pallen, M.J.3    Busby, S.J.W.4
  • 38
    • 11844298461 scopus 로고    scopus 로고
    • The LEE1 promoters from both Enteropathogenic and Enterohemorrhagic Escherichia coli can be activated by PerC-like proteins from either organism
    • Porter ME, Mitchell P, Free A, Smith DGE, Gally DL, (2005) The LEE1 promoters from both Enteropathogenic and Enterohemorrhagic Escherichia coli can be activated by PerC-like proteins from either organism. J Bacteriol 187: 458–472. doi: 10.1128/JB.187.2.458 15629917
    • (2005) J Bacteriol , vol.187 , pp. 458-472
    • Porter, M.E.1    Mitchell, P.2    Free, A.3    Smith, D.G.E.4    Gally, D.L.5
  • 39
    • 34248399578 scopus 로고    scopus 로고
    • QseA directly activates transcription of LEE1 in enterohemorrhagic Escherichia coli
    • Sharp FC, Sperandio V, (2007) QseA directly activates transcription of LEE1 in enterohemorrhagic Escherichia coli. Infect Immun 75: 2432–2440. doi: 10.1128/IAI.02003-06 17339361
    • (2007) Infect Immun , vol.75 , pp. 2432-2440
    • Sharp, F.C.1    Sperandio, V.2
  • 40
    • 84868553607 scopus 로고    scopus 로고
    • A distinct regulatory sequence is essential for the expression of a subset of nle genes in attaching and effacing Escherichia coli
    • García-Angulo VA, Martínez-Santos VI, Villaseñor T, Santana FJ, Huerta-Saquero A, et al. (2012) A distinct regulatory sequence is essential for the expression of a subset of nle genes in attaching and effacing Escherichia coli. J Bacteriol 194: 5589–5603. doi: 10.1128/JB.00190-12 22904277
    • (2012) J Bacteriol , vol.194 , pp. 5589-5603
    • García-Angulo, V.A.1    Martínez-Santos, V.I.2    Villaseñor, T.3    Santana, F.J.4    Huerta-Saquero, A.5
  • 41
    • 84863290801 scopus 로고    scopus 로고
    • Expression and regulation of the Escherichia coli O157:H7 effector proteins NleH1 and NleH2
    • Holmes A, Lindestam Arlehamn CS, Wang D, Mitchell TJ, Evans TJ, et al. (2012) Expression and regulation of the Escherichia coli O157:H7 effector proteins NleH1 and NleH2. PLoS One 7: e33408. doi: 10.1371/journal.pone.0033408 22428045
    • (2012) PLoS One , vol.7 , pp. 33408
    • Holmes, A.1    Lindestam, A.C.S.2    Wang, D.3    Mitchell, T.J.4    Evans, T.J.5
  • 42
    • 69949136764 scopus 로고    scopus 로고
    • The uropathogenic species Staphylococcus saprophyticus tolerates a high concentration of D-serine
    • Sakinç T, Michalski N, Kleine B, Gatermann SG, (2009) The uropathogenic species Staphylococcus saprophyticus tolerates a high concentration of D-serine. FEMS Microbiol Lett 299: 60–64. doi: 10.1111/j.1574-6968.2009.01731.x 19674114
    • (2009) FEMS Microbiol Lett , vol.299 , pp. 60-64
    • Sakinç, T.1    Michalski, N.2    Kleine, B.3    Gatermann, S.G.4
  • 43
    • 84890139500 scopus 로고    scopus 로고
    • Significance of the D-serine-deaminase and D-serine metabolism of Staphylococcus saprophyticus for virulence
    • Korte-Berwanger M, Sakinc T, Kline K, Nielsen H V, Hultgren S, et al. (2013) Significance of the D-serine-deaminase and D-serine metabolism of Staphylococcus saprophyticus for virulence. Infect Immun 81: 4525–4533. doi: 10.1128/IAI.00599-13 24082071
    • (2013) Infect Immun , vol.81 , pp. 4525-4533
    • Korte-Berwanger, M.1    Sakinc, T.2    Kline, K.3    Nielsen, H.V.4    Hultgren, S.5
  • 44
    • 0036267259 scopus 로고    scopus 로고
    • Enteropathogenic Escherichia coli translocate Tir and form an intimin-Tir intimate attachment to red blood cell membranes
    • Shaw RK, Daniell S, Frankel G, Knutton S, (2002) Enteropathogenic Escherichia coli translocate Tir and form an intimin-Tir intimate attachment to red blood cell membranes. Microbiology 148: 1355–1365. 11988509
    • (2002) Microbiology , vol.148 , pp. 1355-1365
    • Shaw, R.K.1    Daniell, S.2    Frankel, G.3    Knutton, S.4
  • 45
    • 0041322752 scopus 로고    scopus 로고
    • Multiple Elements Controlling Adherence of Enterohemorrhagic Escherichia coli O157: H7 to HeLa Cells Multiple Elements Controlling Adherence of Enterohemorrhagic Escherichia coli O157: H7 to HeLa Cells
    • Torres AG, Kaper JB, (2003) Multiple Elements Controlling Adherence of Enterohemorrhagic Escherichia coli O157: H7 to HeLa Cells Multiple Elements Controlling Adherence of Enterohemorrhagic Escherichia coli O157: H7 to HeLa Cells. Infect Immun 71: 4985–4995. doi: 10.1128/IAI.71.9.4985 12933841
    • (2003) Infect Immun , vol.71 , pp. 4985-4995
    • Torres, A.G.1    Kaper, J.B.2
  • 47
    • 84886024842 scopus 로고    scopus 로고
    • EutR is a direct regulator of genes that contribute to metabolism and virulence in enterohemorrhagic Escherichia coli O157:H7
    • Luzader DH, Clark DE, Gonyar LA, Kendall MM, (2013) EutR is a direct regulator of genes that contribute to metabolism and virulence in enterohemorrhagic Escherichia coli O157:H7. J Bacteriol 195: 4947–4953. doi: 10.1128/JB.00937-13 23995630
    • (2013) J Bacteriol , vol.195 , pp. 4947-4953
    • Luzader, D.H.1    Clark, D.E.2    Gonyar, L.A.3    Kendall, M.M.4
  • 48
    • 84898014854 scopus 로고    scopus 로고
    • Microarray analysis of the Ler regulon in enteropathogenic and enterohaemorrhagic Escherichia coli strains
    • Bingle LEH, Constantinidou C, Shaw RK, Islam MS, Patel M, et al. (2014) Microarray analysis of the Ler regulon in enteropathogenic and enterohaemorrhagic Escherichia coli strains. PLoS One 9: e80160. doi: 10.1371/journal.pone.0080160 24454682
    • (2014) PLoS One , vol.9 , pp. 80160
    • Bingle, L.E.H.1    Constantinidou, C.2    Shaw, R.K.3    Islam, M.S.4    Patel, M.5
  • 49
    • 0015624304 scopus 로고
    • Metabolism of D-serine in Escherichia coli K-12: mechanism of growth inhibition
    • Cosloy SD, McFall E, (1973) Metabolism of D-serine in Escherichia coli K-12: mechanism of growth inhibition. J Bacteriol 114: 685–694. 4574697
    • (1973) J Bacteriol , vol.114 , pp. 685-694
    • Cosloy, S.D.1    McFall, E.2
  • 50
    • 4344696800 scopus 로고    scopus 로고
    • Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157: H7 to HEp-2 cells
    • Iyoda S, Watanabe H, (2004) Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157: H7 to HEp-2 cells. Microbiology 150: 2357–2571. doi: 10.1099/mic.0.27100–0 15256577
    • (2004) Microbiology , vol.150 , pp. 2357-2571
    • Iyoda, S.1    Watanabe, H.2
  • 51
    • 79957444913 scopus 로고    scopus 로고
    • Transcriptional regulators of the GAD acid stress island are carried by effector protein-encoding prophages and indirectly control type III secretion in enterohemorrhagic Escherichia coli O157:H7
    • Tree JJ, Roe AJ, Flockhart A, McAteer SP, Xu X, et al. (2011) Transcriptional regulators of the GAD acid stress island are carried by effector protein-encoding prophages and indirectly control type III secretion in enterohemorrhagic Escherichia coli O157:H7. Mol Microbiol 80: 1349–1365. doi: 10.1111/j.1365-2958.2011.07650.x 21492263
    • (2011) Mol Microbiol , vol.80 , pp. 1349-1365
    • Tree, J.J.1    Roe, A.J.2    Flockhart, A.3    McAteer, S.P.4    Xu, X.5
  • 52
    • 0034893772 scopus 로고    scopus 로고
    • Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coli
    • Goldberg MD, Johnson M, Hinton JCD, Williams PH, (2001) Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coli. Mol Microbiol 41: 549–559. doi: 10.1046/j.1365-2958.2001.02526.x 11532124
    • (2001) Mol Microbiol , vol.41 , pp. 549-559
    • Goldberg, M.D.1    Johnson, M.2    Hinton, J.C.D.3    Williams, P.H.4
  • 53
    • 0033458708 scopus 로고    scopus 로고
    • Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli
    • Friedberg D, Umanski T, Fang Y, Rosenshine I, (1999) Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli. Mol Microbiol 34: 941–952. doi: 10.1046/j.1365-2958.1999.01655.x 10594820
    • (1999) Mol Microbiol , vol.34 , pp. 941-952
    • Friedberg, D.1    Umanski, T.2    Fang, Y.3    Rosenshine, I.4
  • 54
    • 47249155189 scopus 로고    scopus 로고
    • Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli
    • Abe H, Miyahara A, Oshima T, Tashiro K, Ogura Y, et al. (2008) Global regulation by horizontally transferred regulators establishes the pathogenicity of Escherichia coli. DNA Res 15: 13–23.
    • (2008) DNA Res , vol.15 , pp. 13-23
    • Abe, H.1    Miyahara, A.2    Oshima, T.3    Tashiro, K.4    Ogura, Y.5
  • 55
    • 84875482643 scopus 로고    scopus 로고
    • Hha controls Escherichia coli O157:H7 biofilm formation by differential regulation of global transcriptional regulators FlhDC and CsgD
    • Sharma VK, Bearson BL, (2013) Hha controls Escherichia coli O157:H7 biofilm formation by differential regulation of global transcriptional regulators FlhDC and CsgD. Appl Environ Microbiol 79: 2384–2396. doi: 10.1128/AEM.02998-12 23377937
    • (2013) Appl Environ Microbiol , vol.79 , pp. 2384-2396
    • Sharma, V.K.1    Bearson, B.L.2
  • 56
    • 33748082663 scopus 로고    scopus 로고
    • How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains
    • Brzuszkiewicz E, Brüggemann H, Liesegang H, Emmerth M, Olschläger T, et al. (2006) How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. Proc Natl Acad Sci U S A 103: 12879–12884. doi: 10.1073/pnas.0603038103 16912116
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 12879-12884
    • Brzuszkiewicz, E.1    Brüggemann, H.2    Liesegang, H.3    Emmerth, M.4    Olschläger, T.5
  • 57
    • 84919905511 scopus 로고    scopus 로고
    • Host-specific induction of Escherichia coli fitness genes during human urinary tract infection
    • Subashchandrabose S, Hazen TH, Brumbaugh AR, Himpsl SD, Smith SN, et al. (2014) Host-specific induction of Escherichia coli fitness genes during human urinary tract infection. Proc Natl Acad Sci U S A 111: 18327–18332. doi: 10.1073/pnas.1415959112 25489107
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 18327-18332
    • Subashchandrabose, S.1    Hazen, T.H.2    Brumbaugh, A.R.3    Himpsl, S.D.4    Smith, S.N.5
  • 58
    • 84878289779 scopus 로고    scopus 로고
    • Genomic diversity and fitness of E. coli strains recovered from the intestinal and urinary tracts of women with recurrent urinary tract infection
    • Chen SL, Wu M, Henderson JP, Hooton TM, Hibbing ME, et al. (2013) Genomic diversity and fitness of E. coli strains recovered from the intestinal and urinary tracts of women with recurrent urinary tract infection. Sci Transl Med 5: 184ra60. doi: 10.1126/scitranslmed.3005497 23658245
    • (2013) Sci Transl Med , vol.5 , pp. 60
    • Chen, S.L.1    Wu, M.2    Henderson, J.P.3    Hooton, T.M.4    Hibbing, M.E.5
  • 59
    • 84907960444 scopus 로고    scopus 로고
    • Characterization of Urinary Tract Infection-Associated Shiga Toxin-Producing Escherichia coli
    • Toval F, Schiller R, Meisen I, Putze J, Kouzel IU, et al. (2014) Characterization of Urinary Tract Infection-Associated Shiga Toxin-Producing Escherichia coli. Infect Immun 82: 4631–4642. doi: 10.1128/IAI.01701-14 25156739
    • (2014) Infect Immun , vol.82 , pp. 4631-4642
    • Toval, F.1    Schiller, R.2    Meisen, I.3    Putze, J.4    Kouzel, I.U.5
  • 60
    • 55849083511 scopus 로고    scopus 로고
    • RegA, an AraC-like protein, is a global transcriptional regulator that controls virulence gene expression in Citrobacter rodentium
    • Hart E, Yang J, Tauschek M, Kelly M, Wakefield MJ, et al. (2008) RegA, an AraC-like protein, is a global transcriptional regulator that controls virulence gene expression in Citrobacter rodentium. Infect Immun 76: 5247–5256. doi: 10.1128/IAI.00770-08 18765720
    • (2008) Infect Immun , vol.76 , pp. 5247-5256
    • Hart, E.1    Yang, J.2    Tauschek, M.3    Kelly, M.4    Wakefield, M.J.5
  • 61
    • 70449526073 scopus 로고    scopus 로고
    • Bicarbonate-mediated stimulation of RegA, the global virulence regulator from Citrobacter rodentium
    • Yang J, Dogovski C, Hocking D, Tauschek M, Perugini M, et al. (2009) Bicarbonate-mediated stimulation of RegA, the global virulence regulator from Citrobacter rodentium. J Mol Biol 394: 591–599. doi: 10.1016/j.jmb.2009.10.033 19853617
    • (2009) J Mol Biol , vol.394 , pp. 591-599
    • Yang, J.1    Dogovski, C.2    Hocking, D.3    Tauschek, M.4    Perugini, M.5
  • 62
    • 84925372828 scopus 로고    scopus 로고
    • Evolutionary adaptation of an AraC-like regulatory protein in Citrobacter rodentium and Escherichia species
    • Tan A, Petty NK, Hocking D, Bennett-Wood V, Wakefield M, et al. (2015) Evolutionary adaptation of an AraC-like regulatory protein in Citrobacter rodentium and Escherichia species. Infect Immun IAI.02697-. doi: 10.1128/IAI.02697-14
    • (2015) Infect Immun
    • Tan, A.1    Petty, N.K.2    Hocking, D.3    Bennett-Wood, V.4    Wakefield, M.5
  • 63
    • 0037040394 scopus 로고    scopus 로고
    • Microbial minimalism: genome reduction in bacterial pathogens
    • Moran NA, (2002) Microbial minimalism: genome reduction in bacterial pathogens. Cell 108: 583–586. 11893328
    • (2002) Cell , vol.108 , pp. 583-586
    • Moran, N.A.1
  • 64
    • 38549126641 scopus 로고    scopus 로고
    • Molecular pathogenesis of Shigella spp.: controlling host cell signaling, invasion, and death by type III secretion
    • Schroeder GN, Hilbi H, (2008) Molecular pathogenesis of Shigella spp.: controlling host cell signaling, invasion, and death by type III secretion. Clin Microbiol Rev 21: 134–156. doi: 10.1128/CMR.00032-07 18202440
    • (2008) Clin Microbiol Rev , vol.21 , pp. 134-156
    • Schroeder, G.N.1    Hilbi, H.2
  • 65
    • 84866928806 scopus 로고    scopus 로고
    • The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems
    • Abby SS, Rocha EPC, (2012) The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems. PLoS Genet 8: e1002983. doi: 10.1371/journal.pgen.1002983 23028376
    • (2012) PLoS Genet , vol.8 , pp. 1002983
    • Abby, S.S.1    Rocha, E.P.C.2
  • 66
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko K a, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640–6645. doi: 10.1073/pnas.120163297 10829079
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.1    Wanner, B.L.2
  • 67
    • 33749411092 scopus 로고    scopus 로고
    • Generation of gene deletions and gene replacements in Escherichia coli O157:H7 using a temperature sensitive allelic exchange system
    • Emmerson JR, Gally DL, Roe AJ, (2006) Generation of gene deletions and gene replacements in Escherichia coli O157:H7 using a temperature sensitive allelic exchange system. Biol Proced Online 8: 153–162. doi: 10.1251/bpo123 17033696
    • (2006) Biol Proced Online , vol.8 , pp. 153-162
    • Emmerson, J.R.1    Gally, D.L.2    Roe, A.J.3
  • 68
    • 33746415885 scopus 로고    scopus 로고
    • A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
    • Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods 3: 623–628. doi: 10.1038/nmeth895 16862137
    • (2006) Nat Methods , vol.3 , pp. 623-628
    • Zaslaver, A.1    Bren, A.2    Ronen, M.3    Itzkovitz, S.4    Kikoin, I.5
  • 69
    • 84969436630 scopus 로고
    • Miller JH, (1972) Experiments in molecular genetics. Cold Spring Harb Lab Press Cold Spring Harb NY.
    • (1972)
    • Miller, J.H.1
  • 70
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139–140. doi: 10.1093/bioinformatics/btp616 19910308
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 71
    • 0346494850 scopus 로고    scopus 로고
    • coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics
    • Chaudhuri RR, Khan AM, Pallen MJ, (2004) coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Res 32: D296–D299. doi: 10.1093/nar/gkh031 14681417
    • (2004) Nucleic Acids Res , vol.32 , pp. 296-299
    • Chaudhuri, R.R.1    Khan, A.M.2    Pallen, M.J.3
  • 72
    • 84876543942 scopus 로고    scopus 로고
    • RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
    • Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, et al. (2013) RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res 41: 203–213. doi: 10.1093/nar/gks1201
    • (2013) Nucleic Acids Res , vol.41 , pp. 203-213
    • Salgado, H.1    Peralta-Gil, M.2    Gama-Castro, S.3    Santos-Zavaleta, A.4    Muñiz-Rascado, L.5
  • 73
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
    • Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 25: 402–408. doi: 10.1006/meth.2001.1262 11846609
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 74
    • 84924291386 scopus 로고    scopus 로고
    • Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity
    • Goldstone RJ, Popat R, Schuberth HJ, Sandra O, Sheldon IM, et al. (2014) Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity. BMC Genomics 15: 1075. doi: 10.1186/1471-2164-15-1075 25481482
    • (2014) BMC Genomics , vol.15 , pp. 1075
    • Goldstone, R.J.1    Popat, R.2    Schuberth, H.J.3    Sandra, O.4    Sheldon, I.M.5
  • 76
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792–1797. doi: 10.1093/nar/gkh340 15034147
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 77
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696–704. doi: 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 78
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K, (2004) APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289–290. doi: 10.1093/bioinformatics/btg412 14734327
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 79
    • 84969424835 scopus 로고    scopus 로고
    • R Development Core Team (2012) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/. R Found Stat Comput Vienna, Austria.
    • (2012)
  • 80
    • 84871008957 scopus 로고    scopus 로고
    • Diversitree: Comparative phylogenetic analyses of diversification in R
    • Fitzjohn RG, (2012) Diversitree: Comparative phylogenetic analyses of diversification in R. Methods Ecol Evol 3: 1084–1092. doi: 10.1111/j.2041-210X.2012.00234.x
    • (2012) Methods Ecol Evol , vol.3 , pp. 1084-1092
    • Fitzjohn, R.G.1


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