-
1
-
-
77955624887
-
Feedstocks for lignocellulosic biofuels
-
Somerville, C., Youngs, H., Taylor, C., Davis, S. C., Long, S. P. Feedstocks for lignocellulosic biofuels. Science 329, 790-792 (2010).
-
(2010)
Science
, vol.329
, pp. 790-792
-
-
Somerville, C.1
Youngs, H.2
Taylor, C.3
Davis, S.C.4
Long, S.P.5
-
2
-
-
77952487417
-
Minimizing land use and nitrogen intensity of bioenergy
-
Miller, S. A. Minimizing land use and nitrogen intensity of bioenergy. Environ. Sci. Technol. 44, 3932-3939 (2010).
-
(2010)
Environ. Sci. Technol
, vol.44
, pp. 3932-3939
-
-
Miller, S.A.1
-
3
-
-
83255174918
-
High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes
-
Argyros, D. A. et al. High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes. Appl. Environ. Microbiol. 77, 8288-8294 (2011).
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 8288-8294
-
-
Argyros, D.A.1
-
4
-
-
84899555105
-
Isobutanol production at elevated temperatures in thermophilic Geobacillus thermoglucosidasius
-
Lin, P. P. et al. Isobutanol production at elevated temperatures in thermophilic Geobacillus thermoglucosidasius. Metab. Eng. 24, 1-8 (2014).
-
(2014)
Metab. Eng
, vol.24
, pp. 1-8
-
-
Lin, P.P.1
-
5
-
-
70349281876
-
Engineering for biofuels: Exploiting innate microbial capacity or importing biosynthetic potential
-
Alper, H., Stephanopoulos, G. Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential? Nat. Rev. Microbiol. 7, 715-723 (2009).
-
(2009)
Nat. Rev. Microbiol
, vol.7
, pp. 715-723
-
-
Alper, H.1
Stephanopoulos, G.2
-
6
-
-
84914126900
-
A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe
-
Keller, M. W. et al. A hybrid synthetic pathway for butanol production by a hyperthermophilic microbe. Metab. Eng. 27, 101-106 (2015).
-
(2015)
Metab. Eng
, vol.27
, pp. 101-106
-
-
Keller, M.W.1
-
7
-
-
79957996656
-
Advances in ethanol production
-
Geddes, C. C., Nieves, I. U., Ingram, L. O. Advances in ethanol production. Curr. Opin. Biotechnol. 22, 312-319 (2011).
-
(2011)
Curr. Opin. Biotechnol
, vol.22
, pp. 312-319
-
-
Geddes, C.C.1
Nieves, I.U.2
Ingram, L.O.3
-
8
-
-
84864186953
-
Metabolic engineering of Saccharomyces cerevisiae: A key cell factory platform for future biorefineries
-
Hong, K. K., Nielsen, J. Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries. Cell. Mol. Life Sci. 69, 2671-90 (2012).
-
(2012)
Cell. Mol. Life Sci
, vol.69
, pp. 2671-2690
-
-
Hong, K.K.1
Nielsen, J.2
-
9
-
-
84886256857
-
Optimizing biofuels production in an uncertain decision environment: Conventional vs. Advanced technologies
-
Ziolkowska, J. R. Optimizing biofuels production in an uncertain decision environment: conventional vs. advanced technologies. Appl. Energ. 114, 366-376 (2014).
-
(2014)
Appl. Energ
, vol.114
, pp. 366-376
-
-
Ziolkowska, J.R.1
-
10
-
-
84874117470
-
Ethanol production in Brazil: The industrial process and its impact on yeast fermentation
-
Basso, L. C., Basso, T. O., Rocha, L. N. Ethanol production in Brazil: the industrial process and its impact on yeast fermentation. Biofuel Production-Recent Developments and Prospects. InTech Europe, Rijeka, Croatia, 2011.
-
(2011)
Biofuel Production-Recent Developments and Prospects. InTech Europe, Rijeka, Croatia
-
-
Basso, L.C.1
Basso, T.O.2
Rocha, L.N.3
-
11
-
-
84878854426
-
Next generation biofuel engineering in prokaryotes
-
Gronenberg, L. S., Marcheschi, R. J., Liao, J. C. Next generation biofuel engineering in prokaryotes. Curr. Opin. Chem. Biol. 17, 462-471 (2013).
-
(2013)
Curr. Opin. Chem. Biol
, vol.17
, pp. 462-471
-
-
Gronenberg, L.S.1
Marcheschi, R.J.2
Liao, J.C.3
-
12
-
-
84861156874
-
Transformation of Clostridium thermocellum by electroporation
-
Olson, D. G., Lynd, L. R. Transformation of Clostridium thermocellum by electroporation. Methods Enzymol. 510, 317-330 (2012).
-
(2012)
Methods Enzymol
, vol.510
, pp. 317-330
-
-
Olson, D.G.1
Lynd, L.R.2
-
13
-
-
77953737787
-
F1F0-ATP synthases of alkaliphilic bacteria: Lessons from their adaptations
-
Hicks, D. B., Liu, J., Fujisawa, M., Krulwich, T. A. F1F0-ATP synthases of alkaliphilic bacteria: lessons from their adaptations. Biochim. Biophys. Acta 1797, 1362-1377 (2010).
-
(2010)
Biochim. Biophys. Acta
, vol.1797
, pp. 1362-1377
-
-
Hicks, D.B.1
Liu, J.2
Fujisawa, M.3
Krulwich, T.A.4
-
14
-
-
18644362176
-
The genome of BCJA1C: A bacteriophage active against the alkaliphilic bacterium
-
Kropinski, A. M., Hayward, M., Agnew, M. D., Jarrell, K. F. The genome of BCJA1C: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii. Extremophiles 9, 99-109 (2005).
-
(2005)
Bacillus Clarkii. Extremophiles
, vol.9
, pp. 99-109
-
-
Kropinski, A.M.1
Hayward, M.2
Agnew, M.D.3
Jarrell, K.F.4
-
15
-
-
77954651868
-
Bacillus marmarensis sp nov, an alkaliphilic, protease-producing bacterium isolated from mushroom compost
-
Denizci, A. A., Kazan, D., Erarslan, A. Bacillus marmarensis sp. nov., an alkaliphilic, protease-producing bacterium isolated from mushroom compost. I. J. Syst. Evol. Microbiol. 60, 1590-1594 (2010).
-
(2010)
I. J. Syst. Evol. Microbiol
, vol.60
, pp. 1590-1594
-
-
Denizci, A.A.1
Kazan, D.2
Erarslan, A.3
-
16
-
-
84999792283
-
Genome sequence of the extreme obligate alkaliphile Bacillus marmarensis strain DSM 21297
-
Wernick, D. G., Choi, K. Y., Tat, C. A., Lafontaine Rivera, J. G., Liao, J. C. Genome sequence of the extreme obligate alkaliphile Bacillus marmarensis strain DSM 21297. Genome Announc 1, 967 (2013).
-
(2013)
Genome Announc
, vol.1
, pp. 967
-
-
Wernick, D.G.1
Choi, K.Y.2
Tat, C.A.3
Lafontaine Rivera, J.G.4
Liao, J.C.5
-
17
-
-
0022370773
-
Growth of natural yeast flora during the fermentation of inoculated wines
-
Heard, G. M., Fleet, G. H. Growth of natural yeast flora during the fermentation of inoculated wines. Appl. Environ. Microbiol. 50, 727-728 (1985).
-
(1985)
Appl. Environ. Microbiol
, vol.50
, pp. 727-728
-
-
Heard, G.M.1
Fleet, G.H.2
-
18
-
-
33750465855
-
Rapid detection and identification of clinically important bacteria by high-resolution melting analysis after broadrange ribosomal RNA real-time PCR
-
Cheng, J. C. et al. Rapid detection and identification of clinically important bacteria by high-resolution melting analysis after broadrange ribosomal RNA real-time PCR. Clin. Chem. 52, 1997-2004 (2006).
-
(2006)
Clin. Chem
, vol.52
, pp. 1997-2004
-
-
Cheng, J.C.1
-
19
-
-
81755166594
-
Protoplast transformation of recalcitrant alkaliphilic Bacillus sp. with methylated plasmid DNA and a developed hard agar regeneration medium
-
Gao, C., Xue, Y., Ma, Y. Protoplast transformation of recalcitrant alkaliphilic Bacillus sp. with methylated plasmid DNA and a developed hard agar regeneration medium. PloS One 6, doi: 10.1371/journal.pone.0028148 (2011).
-
(2011)
PloS One
, pp. 6
-
-
Gao, C.1
Xue, Y.2
Ma, Y.3
-
20
-
-
0035747748
-
Improvement of the electro-transformation efficiency of facultatively alkaliphilic Bacillus pseudofirmus OF4 by high osmolarity and glycine treatment
-
Ito, M., Nagane, M. Improvement of the electro-transformation efficiency of facultatively alkaliphilic Bacillus pseudofirmus OF4 by high osmolarity and glycine treatment. Biosci. Biotechnol. Biochem. 65, 2773-2775 (2001).
-
(2001)
Biosci. Biotechnol. Biochem
, vol.65
, pp. 2773-2775
-
-
Ito, M.1
Nagane, M.2
-
21
-
-
0026721332
-
Instability of the protoplast membrane of facultative alkaliphilic Bacillus sp. C-125 at alkaline pH values below the pH optimum for growth
-
Aono, R., Ito, M., Horikoshi, K. Instability of the protoplast membrane of facultative alkaliphilic Bacillus sp. C-125 at alkaline pH values below the pH optimum for growth. Biochem. J. 285, 99-103 (1992).
-
(1992)
Biochem. J
, vol.285
, pp. 99-103
-
-
Aono, R.1
Ito, M.2
Horikoshi, K.3
-
22
-
-
68249086094
-
Induction of natural competence in Bacillus cereus ATCC14579
-
Mironczuk, A. M., Kovacs, A. T., Kuipers, O. P. Induction of natural competence in Bacillus cereus ATCC14579. Microb. Biotechnol. 1, 226-235 (2008).
-
(2008)
Microb. Biotechnol
, vol.1
, pp. 226-235
-
-
Mironczuk, A.M.1
Kovacs, A.T.2
Kuipers, O.P.3
-
24
-
-
0028060315
-
The optimization of preparations of competent cells for transformation of Escherichia coli
-
Tang, X. R. et al. The optimization of preparations of competent cells for transformation of Escherichia coli. Nucleic Acids Res. 22, 2857-2858 (1994).
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2857-2858
-
-
Tang, X.R.1
-
25
-
-
27944483300
-
Alkaline pH homeostasis in bacteria: New insights
-
Padan, E., Bibi, E., Ito, M., Krulwich, T. A. Alkaline pH homeostasis in bacteria: new insights. Biochim. Biophys. Acta 1717, 67-88 (2005).
-
(2005)
Biochim. Biophys. Acta
, vol.1717
, pp. 67-88
-
-
Padan, E.1
Bibi, E.2
Ito, M.3
Krulwich, T.A.4
-
26
-
-
2942718765
-
Replacement of amino acid sequence features of a-and c-subunits of ATP synthases of alkaliphilic Bacillus with the Bacillus consensus sequence results in defective oxidative phosphorylation and non-fermentative growth at pH 10.5
-
Wang, Z. X., Hicks, D. B., Guffanti, A. A., Baldwin, K., Krulwich, T. A. Replacement of amino acid sequence features of a-and c-subunits of ATP synthases of alkaliphilic Bacillus with the Bacillus consensus sequence results in defective oxidative phosphorylation and non-fermentative growth at pH 10.5. J. Biol. Chem. 279, 26546-26554 (2004).
-
(2004)
J. Biol. Chem
, vol.279
, pp. 26546-26554
-
-
Wang, Z.X.1
Hicks, D.B.2
Guffanti, A.A.3
Baldwin, K.4
Krulwich, T.A.5
-
27
-
-
64649090099
-
Characterization of the functionally critical AXAXAXA and PXXEXXP motifs of the ATP synthase c-subunit from an alkaliphilic Bacillus
-
Liu, J., Fujisawa, M., Hicks, D. B., Krulwich, T. A. Characterization of the functionally critical AXAXAXA and PXXEXXP motifs of the ATP synthase c-subunit from an alkaliphilic Bacillus. J. Biol. Chem. 284, 8714-8725 (2009).
-
(2009)
J. Biol. Chem
, vol.284
, pp. 8714-8725
-
-
Liu, J.1
Fujisawa, M.2
Hicks, D.B.3
Krulwich, T.A.4
-
28
-
-
84901589020
-
The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle
-
Preiss, L. et al. The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle. Mol. Microbiol. 92, 973-984 (2014).
-
(2014)
Mol. Microbiol
, vol.92
, pp. 973-984
-
-
Preiss, L.1
-
29
-
-
78650647970
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
-
Atsumi, S. et al. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Mol. Sys. Biol. 6, doi: 10.1038/msb.2010.98 (2010).
-
(2010)
Mol. Sys. Biol
, vol.6
-
-
Atsumi, S.1
-
30
-
-
0023431472
-
Genetic engineering of ethanol production in Escherichia coli
-
Ingram, L. O., Conway, T., Clark, D. P., Sewell, G. W., Preston, J. F. Genetic engineering of ethanol production in Escherichia coli. Appl. Environ. Microbiol. 53, 2420-2425 (1987).
-
(1987)
Appl. Environ. Microbiol
, vol.53
, pp. 2420-2425
-
-
Ingram, L.O.1
Conway, T.2
Clark, D.P.3
Sewell, G.W.4
Preston, J.F.5
-
31
-
-
0024236673
-
The mechanism of conservative site-specific recombination
-
Craig, N. L. The mechanism of conservative site-specific recombination. Annu. Rev. Genet. 22, 77-105 (1988).
-
(1988)
Annu. Rev. Genet
, vol.22
, pp. 77-105
-
-
Craig, N.L.1
-
32
-
-
0029065955
-
Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
-
Cherepanov, P. P., Wackernagel, W. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene 158, 9-14 (1995).
-
(1995)
Gene
, vol.158
, pp. 9-14
-
-
Cherepanov, P.P.1
Wackernagel, W.2
-
33
-
-
0032986060
-
Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum
-
Desai, R. P., Papoutsakis, E. T. Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum. Appl. Environ. Microbiol. 65, 936-945 (1999).
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 936-945
-
-
Desai, R.P.1
Papoutsakis, E.T.2
-
34
-
-
84865142847
-
Microbial engineering for the production of advanced biofuels
-
Peralta-Yahya, P. P., Zhang, F., del Cardayre, F. B., Keasling, J. D. Microbial engineering for the production of advanced biofuels. Nature 488, 320-328 (2012).
-
(2012)
Nature
, vol.488
, pp. 320-328
-
-
Peralta-Yahya, P.P.1
Zhang, F.2
Del Cardayre, F.B.3
Keasling, J.D.4
-
35
-
-
79952262024
-
Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation
-
Ha, S. J. et al. Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc. Natl. Acad. Sci. USA 108, 504-509 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 504-509
-
-
Ha, S.J.1
-
36
-
-
34548244498
-
Metabolic engineering of Bacillus subtilis for Ethanol production: Lactate dehydrogenase plays a key role in fermentative metabolism
-
Romero, S., Merino, E., Bolivar, F., Gosset, G., Martinez, A. Metabolic engineering of Bacillus subtilis for Ethanol production: lactate dehydrogenase plays a key role in fermentative metabolism. Appl. Environ. Microbiol. 73, 5910-5198 (2007).
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5910-5198
-
-
Romero, S.1
Merino, E.2
Bolivar, F.3
Gosset, G.4
Martinez, A.5
-
37
-
-
84907362164
-
Metabolic engineering of Corynebacterium glutamicum for L-arginine production
-
Park, S. H. et al. Metabolic engineering of Corynebacterium glutamicum for L-arginine production. Nat. Commun. 5, 4618 (2014).
-
(2014)
Nat. Commun
, vol.5
, pp. 4618
-
-
Park, S.H.1
-
38
-
-
84863303532
-
Industrial production of recombinant therapeutics in Escherichia coli and its recent advancements
-
Huang, C. J., Lin, H., Yang, X. Industrial production of recombinant therapeutics in Escherichia coli and its recent advancements. J. Ind. Microbiol. Biotechnol 39, 383-399 (2012).
-
(2012)
J. Ind. Microbiol. Biotechnol
, vol.39
, pp. 383-399
-
-
Huang, C.J.1
Lin, H.2
Yang, X.3
-
39
-
-
79952429363
-
Engineering lactic acid bacteria for increase industrial functionality
-
Bron, P. A., Kleerebezem, M. Engineering lactic acid bacteria for increase industrial functionality. Bioeng. Bugs 2, 80-87 (2011).
-
(2011)
Bioeng. Bugs
, vol.2
, pp. 80-87
-
-
Bron, P.A.1
Kleerebezem, M.2
-
40
-
-
2142832992
-
-
Butterworth-Heinemann Oxford, United Kingdom
-
Towler, G., Sonnott, R. Chemical Engineering Design: Principles, Practice and Process Design. 2nd Edition. Butterworth-Heinemann, Oxford, United Kingdom (2012).
-
(2012)
Chemical Engineering Design: Principles, Practice and Process Design. 2nd Edition
-
-
Towler, G.1
Sonnott, R.2
-
42
-
-
84895827954
-
Translate rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream stand by cites
-
Borujeni, A. E., Channarasappa, A. S., Salis, H. M. Translate rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream stand by cites. Nucleic Acids Res. 42, 2646-2659 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 2646-2659
-
-
Borujeni, A.E.1
Channarasappa, A.S.2
Salis, H.M.3
-
43
-
-
71549139483
-
Complementary retrieval of 16s rRNA gene sequences using broad-range primers with inosine at 3?-terminus: Implications for the study of microbial diversity
-
Brands, B. et al. Complementary retrieval of 16s rRNA gene sequences using broad-range primers with inosine at 3?-terminus: implications for the study of microbial diversity. FEMS Microbiol. Ecol. 71, 157-167 (2010).
-
(2010)
FEMS Microbiol. Ecol
, vol.71
, pp. 157-167
-
-
Brands, B.1
-
44
-
-
79953889249
-
Conversion of proteins into biofuels by engineering nitrogen flux
-
Huo, Y. X. et al. Conversion of proteins into biofuels by engineering nitrogen flux. Nat. Biotechnol. 29, 346-351 (2011).
-
(2011)
Nat. Biotechnol
, vol.29
, pp. 346-351
-
-
Huo, Y.X.1
|