-
1
-
-
0016840073
-
Physical properties of membrane lipids: Biological relevance and regulation
-
PMID: 1100043
-
Cronan JE Jr., Gelmann EP. Physical properties of membrane lipids: biological relevance and regulation. Bacteriol Rev. 1975; 39:232-56. PMID: 1100043
-
(1975)
Bacteriol Rev
, vol.39
, pp. 232-256
-
-
Cronan, J.E.1
Gelmann, E.P.2
-
2
-
-
17044450798
-
Molecular dynamics simulations of charged and neutral lipid bilayers: Treatment of electrostatic interactions
-
PMID: 14515159
-
Rog T, Murzyn K, Pasenkiewicz-Gierula M. Molecular dynamics simulations of charged and neutral lipid bilayers: treatment of electrostatic interactions. Acta Biochim Pol. 2003; 50:789-98. PMID: 14515159
-
(2003)
Acta Biochim Pol
, vol.50
, pp. 789-798
-
-
Rog, T.1
Murzyn, K.2
Pasenkiewicz-Gierula, M.3
-
3
-
-
56249119219
-
The molecular face of lipid rafts in model membranes
-
PMID: 18987307
-
Risselada HJ, Marrink SJ. The molecular face of lipid rafts in model membranes. Proc Natl Acad Sci U S A. 2008; 105:17367-72. doi: 10.1073/pnas.0807527105 PMID: 18987307
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 17367-17372
-
-
Risselada, H.J.1
Marrink, S.J.2
-
4
-
-
36949024736
-
Control of membrane fusion mechanism by lipid composition: Predictions from ensemble molecular dynamics
-
PMID: 18020701
-
Kasson PM, Pande VS. Control of membrane fusion mechanism by lipid composition: predictions from ensemble molecular dynamics. PLoS Comput Biol. 2007; 3:e220. PMID: 18020701
-
(2007)
PLoS Comput Biol
, vol.3
, pp. e220
-
-
Kasson, P.M.1
Pande, V.S.2
-
5
-
-
79959844734
-
Dynamic structure formation of peripheral membrane proteins
-
PMID: 21731477
-
Morozova D, Guigas G, Weiss M. Dynamic structure formation of peripheral membrane proteins. PLoS Comput Biol. 2011; 7:e1002067. doi: 10.1371/journal.pcbi.1002067 PMID: 21731477
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002067
-
-
Morozova, D.1
Guigas, G.2
Weiss, M.3
-
6
-
-
33750805030
-
Molecular anatomy of a trafficking organelle
-
PMID: 17110340
-
Takamori S, Holt M, Stenius K, Lemke EA, Gronborg M, Riedel D, et al. Molecular anatomy of a trafficking organelle. Cell. 2006; 127:831-46. PMID: 17110340
-
(2006)
Cell
, vol.127
, pp. 831-846
-
-
Takamori, S.1
Holt, M.2
Stenius, K.3
Lemke, E.A.4
Gronborg, M.5
Riedel, D.6
-
7
-
-
0015876764
-
Membrane structure: Some general principles
-
PMID: 4724478
-
Bretscher MS. Membrane structure: some general principles. Science. 1973; 181:622-9. PMID: 4724478
-
(1973)
Science
, vol.181
, pp. 622-629
-
-
Bretscher, M.S.1
-
8
-
-
0017684055
-
Rapid transmembrane movement of newly synthesized phospholipids during membrane assembly
-
PMID: 405668
-
Rothman JE, Kennedy EP. Rapid transmembrane movement of newly synthesized phospholipids during membrane assembly. Proc Natl Acad Sci U S A. 1977; 74:1821-5. PMID: 405668
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, pp. 1821-1825
-
-
Rothman, J.E.1
Kennedy, E.P.2
-
9
-
-
0017356323
-
Membrane asymmetry
-
PMID: 402030
-
Rothman JE, Lenard J. Membrane asymmetry. Science. 1977; 195:743-53. PMID: 402030
-
(1977)
Science
, vol.195
, pp. 743-753
-
-
Rothman, J.E.1
Lenard, J.2
-
10
-
-
0030750478
-
Lipid composition and phospholipid asymmetry of membranes from a schwann cell line
-
PMID: 9260748
-
Calderon RO, DeVries GH. Lipid composition and phospholipid asymmetry of membranes from a Schwann cell line. J Neurosci Res. 1997; 49:372-80. PMID: 9260748
-
(1997)
J Neurosci Res
, vol.49
, pp. 372-380
-
-
Calderon, R.O.1
DeVries, G.H.2
-
11
-
-
0021746481
-
Role of membrane lipid asymmetry in aging
-
PMID: 6397694
-
Schroeder F. Role of membrane lipid asymmetry in aging. Neurobiol Aging. 1984; 5:323-33. PMID: 6397694
-
(1984)
Neurobiol Aging
, vol.5
, pp. 323-333
-
-
Schroeder, F.1
-
12
-
-
0028929745
-
Recognition of oxidatively damaged and apoptotic cells by an oxidized low density lipoprotein receptor on mouse peritoneal macrophages: Role of membrane phosphatidylserine
-
PMID: 7877989
-
Sambrano GR, Steinberg D. Recognition of oxidatively damaged and apoptotic cells by an oxidized low density lipoprotein receptor on mouse peritoneal macrophages: role of membrane phosphatidylserine. Proc Natl Acad Sci U S A. 1995; 92:1396-400. PMID: 7877989
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 1396-1400
-
-
Sambrano, G.R.1
Steinberg, D.2
-
13
-
-
0017387155
-
Membrane asymmetry and blood coagulation
-
PMID: 887167
-
Zwaal RF, Comfurius P, van Deenen LL. Membrane asymmetry and blood coagulation. Nature. 1977; 268:358-60. PMID: 887167
-
(1977)
Nature
, vol.268
, pp. 358-360
-
-
Zwaal, R.F.1
Comfurius, P.2
Van Deenen, L.L.3
-
14
-
-
38549173564
-
Membrane lipids: Where they are and how they behave
-
PMID: 18216768
-
van Meer G, Voelker DR, Feigenson GW. Membrane lipids: where they are and how they behave. Nat Rev Mol Cell Biol. 2008; 9:112-24. doi: 10.1038/nrm2330 PMID: 18216768
-
(2008)
Nat Rev Mol Cell Biol
, vol.9
, pp. 112-124
-
-
Van Meer, G.1
Voelker, D.R.2
Feigenson, G.W.3
-
15
-
-
61949446361
-
Sterols are mainly in the cytoplasmic leaflet of the plasma membrane and the endocytic recycling compartment in cho cells
-
PMID: 19019985
-
Mondal M, Mesmin B, Mukherjee S, Maxfield FR. Sterols are mainly in the cytoplasmic leaflet of the plasma membrane and the endocytic recycling compartment in CHO cells. Mol Biol Cell. 2009; 20:581-8. doi: 10.1091/mbc.E08-07-0785 PMID: 19019985
-
(2009)
Mol Biol Cell
, vol.20
, pp. 581-588
-
-
Mondal, M.1
Mesmin, B.2
Mukherjee, S.3
Maxfield, F.R.4
-
16
-
-
79851488392
-
Cholesterol asymmetry in synaptic plasma membranes
-
PMID: 21214553
-
Wood WG, Igbavboa U, Muller WE, Eckert GP. Cholesterol asymmetry in synaptic plasma membranes. J Neurochem. 2011; 116:684-9. doi: 10.1111/j.1471-4159.2010.07017.x PMID: 21214553
-
(2011)
J Neurochem
, vol.116
, pp. 684-689
-
-
Wood, W.G.1
Igbavboa, U.2
Muller, W.E.3
Eckert, G.P.4
-
17
-
-
71949107402
-
Asymmetric distribution of cholesterol in unilamellar vesicles of monounsaturated phospholipids
-
PMID: 19678653
-
Kucerka N, Nieh MP, Katsaras J. Asymmetric distribution of cholesterol in unilamellar vesicles of monounsaturated phospholipids. Langmuir. 2009; 25:13522-7. doi: 10.1021/la9020299 PMID: 19678653
-
(2009)
Langmuir
, vol.25
, pp. 13522-13527
-
-
Kucerka, N.1
Nieh, M.P.2
Katsaras, J.3
-
18
-
-
69349085157
-
Molecular view of cholesterol flipflop and chemical potential in different membrane environments
-
PMID: 19673519
-
Bennett WF, MacCallum JL, Hinner MJ, Marrink SJ, Tieleman DP. Molecular view of cholesterol flipflop and chemical potential in different membrane environments. J Am Chem Soc. 2009; 131:12714- 20 doi: 10.1021/ja903529f PMID: 19673519
-
(2009)
J Am Chem Soc
, vol.131
, pp. 12714-12720
-
-
Bennett, W.F.1
MacCallum, J.L.2
Hinner, M.J.3
Marrink, S.J.4
Tieleman, D.P.5
-
19
-
-
38349032639
-
Cholesterol shows preference for the interior of polyunsaturated lipid membranes
-
PMID: 18076174
-
Marrink SJ, de Vries AH, Harroun TA, Katsaras J, Wassall SR. Cholesterol shows preference for the interior of polyunsaturated lipid membranes. J Am Chem Soc. 2008; 130:10-1. PMID: 18076174
-
(2008)
J Am Chem Soc
, vol.130
, pp. 10-11
-
-
Marrink, S.J.1
De Vries, A.H.2
Harroun, T.A.3
Katsaras, J.4
Wassall, S.R.5
-
20
-
-
1642485164
-
Coarse grained model for semiquantitative lipid simulations
-
Marrink SJ, de Vries AH, Mark AE. Coarse grained model for semiquantitative lipid simulations. J Phys Chem B. 2004; 108:750-60.
-
(2004)
J Phys Chem B
, vol.108
, pp. 750-760
-
-
Marrink, S.J.1
De Vries, A.H.2
Mark, A.E.3
-
21
-
-
84908374604
-
Lipid organization of the plasma membrane
-
PMID: 25229711
-
Ingolfsson HI, Melo MN, van Eerden FJ, Arnarez C, Lopez CA, Wassenaar TA, et al. Lipid organization of the plasma membrane. J Am Chem Soc. 2014; 136:14554-9. doi: 10.1021/ja507832e PMID: 25229711
-
(2014)
J Am Chem Soc
, vol.136
, pp. 14554-14559
-
-
Ingolfsson, H.I.1
Melo, M.N.2
Van Eerden, F.J.3
Arnarez, C.4
Lopez, C.A.5
Wassenaar, T.A.6
-
22
-
-
84925071051
-
Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations
-
PMID: 25749153
-
van Eerden FJ, de Jong DH, de Vries AH, Wassenaar TA, Marrink SJ. Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations. Biochim Biophys Acta. 2015; 1848:1319-30. doi: 10.1016/j.bbamem.2015.02.025 PMID: 25749153
-
(2015)
Biochim Biophys Acta
, vol.1848
, pp. 1319-1330
-
-
Van Eerden, F.J.1
De Jong, D.H.2
De Vries, A.H.3
Wassenaar, T.A.4
Marrink, S.J.5
-
23
-
-
84933574452
-
Interaction of menthol with mixed-lipid bilayer of stratum corneum: A coarse-grained simulation study
-
Wan G, Dai X, Yin Q, Shi X, Qiao Y. Interaction of menthol with mixed-lipid bilayer of stratum corneum: A coarse-grained simulation study. J Mol Graphics Model. 2015; 60:98-107.
-
(2015)
J Mol Graphics Model
, vol.60
, pp. 98-107
-
-
Wan, G.1
Dai, X.2
Yin, Q.3
Shi, X.4
Qiao, Y.5
-
24
-
-
84938254553
-
Structural changes in ceramide bilayers rationalize increased permeation through stratum corneum models with shorter acyl tails
-
PMID: 26151643
-
Paloncyýovaý Mt, Vaývrovaý Ki, Sovovaý Zo, DeVane R, Otyepka M, Berka K. Structural Changes in Ceramide Bilayers Rationalize Increased Permeation through Stratum Corneum Models with Shorter Acyl Tails. J Phys Chem B. 2015; 119:9811-9. doi: 10.1021/acs.jpcb.5b05522 PMID: 26151643
-
(2015)
J Phys Chem B
, vol.119
, pp. 9811-9819
-
-
Paloncyýovaý, M.T.1
Vaývrovaý, K.I.2
Sovovaý, Zo.3
DeVane, R.4
Otyepka, M.5
Berka, K.6
-
25
-
-
84941651018
-
Dynamics of the glycophorin a dimer in membranes of native-like composition uncovered by coarse-grained molecular dynamics simulations
-
PMID: 26222139
-
Flinner N, Schleiff E. Dynamics of the Glycophorin A Dimer in Membranes of Native-Like Composition Uncovered by Coarse-Grained Molecular Dynamics Simulations. PloS one. 2015; 10:e0133999. doi: 10.1371/journal.pone.0133999 PMID: 26222139
-
(2015)
PloS One
, vol.10
, pp. e0133999
-
-
Flinner, N.1
Schleiff, E.2
-
26
-
-
41149134824
-
Automated builder and database of protein/membrane complexes for molecular dynamics simulations
-
PMID: 17849009
-
Jo S, Kim T, Im W. Automated builder and database of protein/membrane complexes for molecular dynamics simulations. PloS one. 2007; 2:e880. PMID: 17849009
-
(2007)
PloS One
, vol.2
, pp. e880
-
-
Jo, S.1
Kim, T.2
Im, W.3
-
27
-
-
84940742590
-
Memgen: A general web server for the setup of lipid membrane simulation systems
-
Knight CJ, Hub JS. MemGen: A general web server for the setup of lipid membrane simulation systems. Bioinformatics. 2015:btv292.
-
(2015)
Bioinformatics
, pp. btv292
-
-
Knight, C.J.1
Hub, J.S.2
-
28
-
-
84925062589
-
Computational lipidomics with insane: A versatile tool for generating custom membranes for molecular simulations
-
PMID: 26574417
-
Wassenaar TA, Ingólfsson HI, Boöckmann RA, Tieleman DP, Marrink SJ. Computational lipidomics with insane: a versatile tool for generating custom membranes for molecular simulations. J Chem Theory Comput. 2015; 11:2144-55. doi: 10.1021/acs.jctc.5b00209 PMID: 26574417
-
(2015)
J Chem Theory Comput
, vol.11
, pp. 2144-2155
-
-
Wassenaar, T.A.1
Ingólfsson, H.I.2
Boöckmann, R.A.3
Tieleman, D.P.4
Marrink, S.J.5
-
29
-
-
41449119304
-
Coarse-grained md simulations of membrane protein-bilayer self-Assembly
-
PMID: 18400182
-
Scott KA, Bond PJ, Ivetac A, Chetwynd AP, Khalid S, Sansom MS. Coarse-grained MD simulations of membrane protein-bilayer self-Assembly. Structure. 2008; 16:621-30. doi: 10.1016/j.str.2008.01.014 PMID: 18400182
-
(2008)
Structure
, vol.16
, pp. 621-630
-
-
Scott, K.A.1
Bond, P.J.2
Ivetac, A.3
Chetwynd, A.P.4
Khalid, S.5
Sansom, M.S.6
-
30
-
-
84903362950
-
The hydrophobic effect: Formation of micelles and biological membranes, 2nd edition (tanford, charles
-
Clarke S. The hydrophobic effect: Formation of micelles and biological membranes, 2nd edition (Tanford, Charles). J Chem Educ. 1981; 58:A246.
-
(1981)
J Chem Educ
, vol.58
, pp. A246
-
-
Clarke, S.1
-
31
-
-
84936845938
-
Memprotmd: Automated insertion of membrane protein structures into explicit lipid membranes
-
Stansfeld PJ, Goose JE, Caffrey M, Carpenter EP, Parker JL, Newstead S, et al. MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes. Structure. 2015.
-
(2015)
Structure
-
-
Stansfeld, P.J.1
Goose, J.E.2
Caffrey, M.3
Carpenter, E.P.4
Parker, J.L.5
Newstead, S.6
-
33
-
-
65649143541
-
Synapse-to-synapse variation in mean synaptic vesicle size and its relationship with synaptic morphology and function
-
PMID 19330815
-
Qu L, Akbergenova Y, Hu Y, Schikorski T. Synapse-to-synapse variation in mean synaptic vesicle size and its relationship with synaptic morphology and function. J Comp Neurol. 2009; 514:343-52. doi: 10. 1002/cne.22007 PMID: 19330815
-
(2009)
J Comp Neurol
, vol.514
, pp. 343-352
-
-
Qu, L.1
Akbergenova, Y.2
Hu, Y.3
Schikorski, T.4
-
34
-
-
0345098288
-
Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles
-
PMID: 14653758
-
Marrink SJ, Mark AE. Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles. J Am Chem Soc. 2003; 125:15233-42. PMID: 14653758
-
(2003)
J Am Chem Soc
, vol.125
, pp. 15233-15242
-
-
Marrink, S.J.1
Mark, A.E.2
-
35
-
-
1842738717
-
Molecular dynamics simulation of the spontaneous formation of a small dppc vesicle in water in atomistic detail
-
PMID: 15070345
-
de Vries AH, Mark AE, Marrink SJ. Molecular dynamics simulation of the spontaneous formation of a small DPPC vesicle in water in atomistic detail. J Am Chem Soc. 2004; 126:4488-9. PMID: 15070345
-
(2004)
J Am Chem Soc
, vol.126
, pp. 4488-4489
-
-
De Vries, A.H.1
Mark, A.E.2
Marrink, S.J.3
-
36
-
-
0000254361
-
A voronoi analysis of lipid area fluctuation in a bilayer
-
Shinoda W, Okazaki S. A Voronoi analysis of lipid area fluctuation in a bilayer. J Chem Phys. 1998; 109:1517-21.
-
(1998)
J Chem Phys
, vol.109
, pp. 1517-1521
-
-
Shinoda, W.1
Okazaki, S.2
-
37
-
-
0345098288
-
Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles
-
PMID: 14653758
-
Marrink SJ, Mark AE. Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles. J Am Chem Soc. 2003; 125:15233-42. PMID: 14653758
-
(2003)
J Am Chem Soc
, vol.125
, pp. 15233-15242
-
-
Marrink, S.J.1
Mark, A.E.2
-
38
-
-
67749120188
-
Helical extension of the neuronal snare complex into the membrane
-
PMID: 19571812
-
Stein A, Weber G, Wahl MC, Jahn R. Helical extension of the neuronal SNARE complex into the membrane. Nature. 2009; 460:525-8. doi: 10.1038/nature08156 PMID: 19571812
-
(2009)
Nature
, vol.460
, pp. 525-528
-
-
Stein, A.1
Weber, G.2
Wahl, M.C.3
Jahn, R.4
-
39
-
-
66349122907
-
Clustering of syntaxin-1a in model membranes is modulated by phosphatidylinositol 4,5-bisphosphate and cholesterol
-
PMID: 19364135
-
Murray DH, Tamm LK. Clustering of syntaxin-1A in model membranes is modulated by phosphatidylinositol 4,5-bisphosphate and cholesterol. Biochemistry. 2009; 48:4617-25. doi: 10.1021/bi9003217 PMID: 19364135
-
(2009)
Biochemistry
, vol.48
, pp. 4617-4625
-
-
Murray, D.H.1
Tamm, L.K.2
-
40
-
-
39449106371
-
Snare-catalyzed fusion events are regulated by syntaxin1a-lipid interactions
-
PMID: 18003982
-
Lam AD, Tryoen-Toth P, Tsai B, Vitale N, Stuenkel EL. SNARE-catalyzed fusion events are regulated by Syntaxin1A-lipid interactions. Mol Biol Cell. 2008; 19:485-97. PMID: 18003982
-
(2008)
Mol Biol Cell
, vol.19
, pp. 485-497
-
-
Lam, A.D.1
Tryoen-Toth, P.2
Tsai, B.3
Vitale, N.4
Stuenkel, E.L.5
-
41
-
-
84867057655
-
Phosphatidylinositol 4,5-biphosphate (pip(2)) lipids regulate the phosphorylation of syntaxin n-terminus by modulating both its position and local structure
-
PMID: 22950482
-
Khelashvili G, Galli A, Weinstein H. Phosphatidylinositol 4,5-biphosphate (PIP(2)) lipids regulate the phosphorylation of syntaxin N-terminus by modulating both its position and local structure. Biochemistry. 2012; 51:7685-98. doi: 10.1021/bi300833z PMID: 22950482
-
(2012)
Biochemistry
, vol.51
, pp. 7685-7698
-
-
Khelashvili, G.1
Galli, A.2
Weinstein, H.3
-
42
-
-
0027413655
-
Snap receptors implicated in vesicle targeting and fusion
-
PMID: 8455717
-
Söllner T, Whiteheart S, Brunner M, Erdjument-Bromage H, Geromanos M, Tempst P, et al. SNAP receptors implicated in vesicle targeting and fusion. Nature. 1993; 362:318-23. PMID: 8455717
-
(1993)
Nature
, vol.362
, pp. 318-323
-
-
Söllner, T.1
Whiteheart, S.2
Brunner, M.3
Erdjument-Bromage, H.4
Geromanos, M.5
Tempst, P.6
-
43
-
-
84865798240
-
Coarse-grain simulations reveal movement of the synaptobrevin c-terminus in response to piconewton forces
-
PMID: 23009845
-
Lindau M, Hall BA, Chetwynd A, Beckstein O, Sansom MSP. Coarse-Grain Simulations Reveal Movement of the Synaptobrevin C-Terminus in Response to Piconewton Forces. Biophys J. 2012; 103:959-69 PMID: 23009845
-
(2012)
Biophys J
, vol.103
, pp. 959-969
-
-
Lindau, M.1
Hall, B.A.2
Chetwynd, A.3
Beckstein, O.4
Sansom, M.S.P.5
-
44
-
-
72749123748
-
Pip2)-binding site in kir channels: Definition by multiscale biomolecular simulations
-
PMID: 19839652
-
Stansfeld PJ, Hopkinson R, Ashcroft FM, Sansom MS. PIP(2)-binding site in Kir channels: definition by multiscale biomolecular simulations. Biochemistry. 2009; 48:10926-33. doi: 10.1021/bi9013193 PMID: 19839652
-
(2009)
Biochemistry
, vol.48
, pp. 10926-10933
-
-
Stansfeld, P.J.1
Hopkinson, R.2
Ashcroft, F.M.3
Sansom, M.S.4
-
45
-
-
84872535182
-
Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel
-
PMID: 23270460
-
Schmidt MR, Stansfeld PJ, Tucker SJ, Sansom MS. Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel. Biochemistry. 2013; 52:279-81. doi: 10.1021/bi301350s PMID: 23270460
-
(2013)
Biochemistry
, vol.52
, pp. 279-281
-
-
Schmidt, M.R.1
Stansfeld, P.J.2
Tucker, S.J.3
Sansom, M.S.4
-
46
-
-
80055016099
-
Molecular mechanism of cholesterol-And polyphosphoinositide-mediated syntaxin clustering
-
PMID: 21916482
-
Murray DH, Tamm LK. Molecular mechanism of cholesterol-And polyphosphoinositide-mediated syntaxin clustering. Biochemistry. 2011; 50:9014-22. doi: 10.1021/bi201307u PMID: 21916482
-
(2011)
Biochemistry
, vol.50
, pp. 9014-9022
-
-
Murray, D.H.1
Tamm, L.K.2
-
47
-
-
45549086083
-
Membrane potential and electrostatics of phospholipid bilayers with asymmetric transmembrane distribution of anionic lipids
-
PMID 18363402
-
Gurtovenko AA, Vattulainen I. Membrane potential and electrostatics of phospholipid bilayers with asymmetric transmembrane distribution of anionic lipids. J Phys Chem B. 2008; 112:4629-34. doi: 10. 1021/jp8001993 PMID: 18363402
-
(2008)
J Phys Chem B
, vol.112
, pp. 4629-4634
-
-
Gurtovenko, A.A.1
Vattulainen, I.2
-
48
-
-
68949119574
-
Molecular model of a cell plasma membrane with an asymmetric multicomponent composition: Water permeation and ion effects
-
PMID: 19486672
-
Vácha R, Berkowitz ML, Jungwirth P. Molecular model of a cell plasma membrane with an asymmetric multicomponent composition: water permeation and ion effects. Biophys J. 2009; 96:4493-501. doi: 10.1016/j.bpj.2009.03.010 PMID: 19486672
-
(2009)
Biophys J
, vol.96
, pp. 4493-4501
-
-
Vácha, R.1
Berkowitz, M.L.2
Jungwirth, P.3
-
49
-
-
79955451530
-
Interleaflet interaction and asymmetry in phase separated lipid bilayers: Molecular dynamics simulations
-
PMID: 21473645
-
Perlmutter JD, Sachs JN. Interleaflet interaction and asymmetry in phase separated lipid bilayers: molecular dynamics simulations. J Am Chem Soc. 2011; 133:6563-77. doi: 10.1021/ja106626r PMID: 21473645
-
(2011)
J Am Chem Soc
, vol.133
, pp. 6563-6577
-
-
Perlmutter, J.D.1
Sachs, J.N.2
-
50
-
-
84869193583
-
Atomistic simulations of a multicomponent asymmetric lipid bilayer
-
PMID: 23088327
-
Polley A, Vemparala S, Rao M. Atomistic simulations of a multicomponent asymmetric lipid bilayer. J Phys Chem B. 2012; 116:13403-10. doi: 10.1021/jp3032868 PMID: 23088327
-
(2012)
J Phys Chem B
, vol.116
, pp. 13403-13410
-
-
Polley, A.1
Vemparala, S.2
Rao, M.3
-
51
-
-
84921721105
-
Cholesterol behavior in asymmetric lipid bilayers: Insights from molecular dynamics simulations
-
Springer
-
Yesylevskyy SO, Demchenko AP. Cholesterol Behavior in Asymmetric Lipid Bilayers: Insights from Molecular Dynamics Simulations. Methods in Membrane Lipids: Springer; 2015. p. 291-306.
-
(2015)
Methods in Membrane Lipids
, pp. 291-306
-
-
Yesylevskyy, S.O.1
Demchenko, A.P.2
-
52
-
-
0035831092
-
Molecular dynamics simulations of stratum corneum lipid models: Fatty acids and cholesterol
-
Höltje M, Förster T, Brandt B, Engels T, von Rybinski W, Höltje H-D. Molecular dynamics simulations of stratum corneum lipid models: fatty acids and cholesterol. Biochimica et Biophysica Acta (BBA)-Biomembranes. 2001; 1511:156-67.
-
(2001)
Biochimica et Biophysica Acta (BBA)-Biomembranes
, vol.1511
, pp. 156-167
-
-
Höltje, M.1
Förster, T.2
Brandt, B.3
Engels, T.4
Von Rybinski, W.5
Höltje, H.-D.6
-
53
-
-
70350009767
-
Simulation studies of stratum corneum lipid mixtures
-
PMID: 19804725
-
Das C, Noro MG, Olmsted PD. Simulation studies of stratum corneum lipid mixtures. Biophys J. 2009; 97:1941-51. doi: 10.1016/j.bpj.2009.06.054 PMID: 19804725
-
(2009)
Biophys J
, vol.97
, pp. 1941-1951
-
-
Das, C.1
Noro, M.G.2
Olmsted, P.D.3
-
54
-
-
84894191338
-
Going backward: A flexible geometric approach to reverse transformation from coarse grained to atomistic models
-
PMID: 26580045
-
Wassenaar TA, Pluhackova K, Boöckmann RA, Marrink SJ, Tieleman DP. Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models. J Chem Theory Comput. 2014; 10:676-90. doi: 10.1021/ct400617g PMID: 26580045
-
(2014)
J Chem Theory Comput
, vol.10
, pp. 676-690
-
-
Wassenaar, T.A.1
Pluhackova, K.2
Boöckmann, R.A.3
Marrink, S.J.4
Tieleman, D.P.5
-
55
-
-
0035789518
-
Gromacs 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E, Hess B, Van Der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Model. 2001; 7:306-17.
-
(2001)
J Mol Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
56
-
-
49449113010
-
The martini coarsegrained force field: Extension to proteins
-
Monticelli L, Kandasamy SK, Periole X, Larson RG, Tieleman DP, Marrink SJ. The MARTINI coarsegrained force field: Extension to proteins. J Chem Theory Comput. 2008; 4:819-34.
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
57
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
PMID: 8254673
-
Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol. 1993; 234:779-815. PMID: 8254673
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
58
-
-
69949118458
-
Packmol: A package for building initial configurations for molecular dynamics simulations
-
PMID: 19229944
-
Martinez L, Andrade R, Birgin EG, Martinez JM. PACKMOL: a package for building initial configurations for molecular dynamics simulations. J Comput Chem. 2009; 30:2157-64. doi: 10.1002/jcc.21224 PMID: 19229944
-
(2009)
J Comput Chem
, vol.30
, pp. 2157-2164
-
-
Martinez, L.1
Andrade, R.2
Birgin, E.G.3
Martinez, J.M.4
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