메뉴 건너뛰기




Volumn 15, Issue 1, 2016, Pages 236-245

Uncovering phosphorylation-based specificities through functional interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHOTRANSFERASE; PROTEIN KINASE; PROTEOME;

EID: 84955492146     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M115.052357     Document Type: Article
Times cited : (62)

References (35)
  • 2
    • 34250878954 scopus 로고    scopus 로고
    • Mechanisms of specificity in protein phosphorylation
    • Ubersax, J. A., and Ferrell, J. E., Jr. (2007) Mechanisms of specificity in protein phosphorylation. Nat. Rev. Mol. Cell Biol. 8, 530-541
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 530-541
    • Ubersax, J.A.1    Ferrell, J.E.2
  • 4
    • 0042622251 scopus 로고    scopus 로고
    • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs
    • Obenauer, J. C., Cantley, L. C., and Yaffe, M. B. (2003) Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. Nucleic Acids Res. 31, 3635-3641
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3635-3641
    • Obenauer, J.C.1    Cantley, L.C.2    Yaffe, M.B.3
  • 5
    • 84857047339 scopus 로고    scopus 로고
    • PhosphoSitePlus: A comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
    • Hornbeck, P. V., Kornhauser, J. M., Tkachev, S., Zhang, B., Skrzypek, E., Murray, B., Latham, V., and Sullivan, M. (2012) PhosphoSitePlus: A comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40, D261-270
    • (2012) Nucleic Acids Res. , vol.40 , pp. D261-270
    • Hornbeck, P.V.1    Kornhauser, J.M.2    Tkachev, S.3    Zhang, B.4    Skrzypek, E.5    Murray, B.6    Latham, V.7    Sullivan, M.8
  • 8
    • 61649126270 scopus 로고    scopus 로고
    • Predicting protein post-translational modifications using meta-analysis of proteome scale data sets
    • Schwartz, D., Chou, M. F., and Church, G. M. (2009) Predicting protein post-translational modifications using meta-analysis of proteome scale data sets. Mol. Cell. Proteomics 8, 365-379
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 365-379
    • Schwartz, D.1    Chou, M.F.2    Church, G.M.3
  • 9
    • 52649145895 scopus 로고    scopus 로고
    • GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy
    • Xue, Y., Ren, J., Gao, X., Jin, C., Wen, L., and Yao, X. (2008) GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy. Mol. Cell. Proteomics 7, 1598-1608
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 1598-1608
    • Xue, Y.1    Ren, J.2    Gao, X.3    Jin, C.4    Wen, L.5    Yao, X.6
  • 10
    • 23144434356 scopus 로고    scopus 로고
    • Kinase- Phos: A web tool for identifying protein kinase-specific phosphorylation sites
    • Huang, H.-D., Lee, T.-Y., Tzeng, S.-W., and Horng, J.-T. (2005) Kinase- Phos: A web tool for identifying protein kinase-specific phosphorylation sites. Nucleic Acids Res. 33, W226-229
    • (2005) Nucleic Acids Res. , vol.33 , pp. W226-229
    • Huang, H.-D.1    Lee, T.-Y.2    Tzeng, S.-W.3    Horng, J.-T.4
  • 11
    • 48449084853 scopus 로고    scopus 로고
    • The Predikin webserver: Improved prediction of protein kinase peptide specificity using structural information
    • Saunders, N. F., and Kobe, B. (2008) The Predikin webserver: Improved prediction of protein kinase peptide specificity using structural information. Nucleic Acids Res. 36, W286-90
    • (2008) Nucleic Acids Res. , vol.36 , pp. W286-290
    • Saunders, N.F.1    Kobe, B.2
  • 14
    • 13444256478 scopus 로고    scopus 로고
    • InParanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien, K. P., Remm, M., and Sonnhammer, E. L. L. (2005) InParanoid: A comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 33, D476-480
    • (2005) Nucleic Acids Res. , vol.33 , pp. D476-480
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.L.3
  • 15
    • 58149193245 scopus 로고    scopus 로고
    • Kinomerv. 1.0: A database of systematically classified eukaryotic protein kinases
    • Martin, D. M., Miranda-Saavedra, D., and Barton, G. J. (2009) Kinomer v. 1.0: A database of systematically classified eukaryotic protein kinases. Nucleic Acids Res. 37, D244-250
    • (2009) Nucleic Acids Res. , vol.37 , pp. D244-250
    • Martin, D.M.1    Miranda-Saavedra, D.2    Barton, G.J.3
  • 16
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn, R. D., Clements, J., and Eddy, S. R. (2011) HMMER web server: Interactive sequence similarity searching. Nucleic Acids Res. 39, W29-37
    • (2011) Nucleic Acids Res. , vol.39 , pp. W29-37
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 17
    • 84857518627 scopus 로고    scopus 로고
    • Biological sequence motif discovery using motif-x
    • Unit 13
    • Chou, M. F., and Schwartz, D. (2011) Biological sequence motif discovery using motif-x. Curr. Protoc. Bioinformatics 13, Unit 13.15-24
    • (2011) Curr. Protoc. Bioinformatics , vol.13 , pp. 15-24
    • Chou, M.F.1    Schwartz, D.2
  • 18
    • 0020480251 scopus 로고
    • Use of the "Perceptron" algorithm to distinguish translational initiation sites in E. Coli
    • Stormo, G. D., Schneider, T. D., Gold, L., and Ehrenfeucht, A. (1982) Use of the "Perceptron" algorithm to distinguish translational initiation sites in E. Coli. Nucleic Acids Res. 10, 2997-3011
    • (1982) Nucleic Acids Res. , vol.10 , pp. 2997-3011
    • Stormo, G.D.1    Schneider, T.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 20
    • 84885100832 scopus 로고    scopus 로고
    • The mutational landscape of phosphorylation signaling in cancer
    • Reimand, J., Wagih, O., and Bader, G. D. (2013) The mutational landscape of phosphorylation signaling in cancer. Sci. Rep. 3, 2651
    • (2013) Sci. Rep. , vol.3 , pp. 2651
    • Reimand, J.1    Wagih, O.2    Bader, G.D.3
  • 21
    • 84903740308 scopus 로고    scopus 로고
    • Large-scale identification of phosphorylation sites for profiling protein kinase selectivity
    • Imamura, H., Sugiyama, N., Wakabayashi, M., and Ishihama, Y. (2014) Large-scale identification of phosphorylation sites for profiling protein kinase selectivity. J. Proteome Res. 13, 3410-3419
    • (2014) J. Proteome Res. , vol.13 , pp. 3410-3419
    • Imamura, H.1    Sugiyama, N.2    Wakabayashi, M.3    Ishihama, Y.4
  • 22
    • 34347403192 scopus 로고    scopus 로고
    • Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications
    • Sugiyama, N., Masuda, T., Shinoda, K., Nakamura, A., Tomita, M., and Ishihama, Y. (2007) Phosphopeptide enrichment by aliphatic hydroxy acid-modified metal oxide chromatography for nano-LC-MS/MS in proteomics applications. Mol. Cell. Proteomics 6, 1103-1109
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1103-1109
    • Sugiyama, N.1    Masuda, T.2    Shinoda, K.3    Nakamura, A.4    Tomita, M.5    Ishihama, Y.6
  • 24
    • 0033788484 scopus 로고    scopus 로고
    • A conserved docking motif in MAP kinases common to substrates, activators and regulators
    • Tanoue, T., Adachi, M., Moriguchi, T., and Nishida, E. (2000) A conserved docking motif in MAP kinases common to substrates, activators and regulators. Nat. Cell Biol. 2, 110-116
    • (2000) Nat. Cell Biol. , vol.2 , pp. 110-116
    • Tanoue, T.1    Adachi, M.2    Moriguchi, T.3    Nishida, E.4
  • 25
    • 0034284131 scopus 로고    scopus 로고
    • Docking domains and substrate-specificity determination for MAP kinases
    • Sharrocks, A. D., Yang, S. H., and Galanis, A. (2000) Docking domains and substrate-specificity determination for MAP kinases. Trends Biochem. Sci. 25, 448-453
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 448-453
    • Sharrocks, A.D.1    Yang, S.H.2    Galanis, A.3
  • 29
    • 84883743725 scopus 로고    scopus 로고
    • Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation
    • Delvecchio, M., Gaucher, J., Aguilar-Gurrieri, C., Ortega, E., and Panne, D. (2013) Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation. Nat. Struct. Mol. Biol. 20, 1040-1046
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 1040-1046
    • Delvecchio, M.1    Gaucher, J.2    Aguilar-Gurrieri, C.3    Ortega, E.4    Panne, D.5
  • 33
    • 65349155149 scopus 로고    scopus 로고
    • Weak functional constraints on phosphoproteomes
    • Landry, C. R., Levy, E. D., and Michnick, S. W. (2009) Weak functional constraints on phosphoproteomes. Trends Genet. 25, 193-197
    • (2009) Trends Genet. , vol.25 , pp. 193-197
    • Landry, C.R.1    Levy, E.D.2    Michnick, S.W.3
  • 34
    • 77957875163 scopus 로고    scopus 로고
    • Moving from transcriptional to phospho-evolution: Generalizing regulatory evolution?
    • Moses, A. M., and Landry, C. R. (2010) Moving from transcriptional to phospho-evolution: Generalizing regulatory evolution? Trends Genet. 26, 462-467
    • (2010) Trends Genet. , vol.26 , pp. 462-467
    • Moses, A.M.1    Landry, C.R.2
  • 35
    • 79956293316 scopus 로고    scopus 로고
    • Extensive DNA-binding specificity divergence of a conserved transcription regulator
    • Baker, C. R., Tuch, B. B., and Johnson, A. D. (2011) Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc. Natl. Acad. Sci. U.S.A. 108, 7493-7498
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 7493-7498
    • Baker, C.R.1    Tuch, B.B.2    Johnson, A.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.