메뉴 건너뛰기




Volumn 14, Issue 1, 2016, Pages 51-60

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato

Author keywords

Ethyl methanesulfonate; Gamma rays; Mutation; Tomato (Solanum lycopersicum); Whole genome resequencing

Indexed keywords

MESYLIC ACID ETHYL ESTER;

EID: 84955189319     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12348     Document Type: Article
Times cited : (123)

References (45)
  • 3
    • 84871839992 scopus 로고    scopus 로고
    • Mapping of Micro-Tom BAC-end sequences to the reference tomato genome reveals possible genome rearrangements and polymorphisms
    • Asamizu, E., Shirasawa, K., Hirakawa, H., Sato, S., Tabata, S., Yano, K., Ariizumi, T., Shibata, D. and Ezura, H. (2012) Mapping of Micro-Tom BAC-end sequences to the reference tomato genome reveals possible genome rearrangements and polymorphisms. Int. J. Plant Genomics, 2012, 437026.
    • (2012) Int. J. Plant Genomics , vol.2012 , pp. 437026
    • Asamizu, E.1    Shirasawa, K.2    Hirakawa, H.3    Sato, S.4    Tabata, S.5    Yano, K.6    Ariizumi, T.7    Shibata, D.8    Ezura, H.9
  • 4
    • 41149088184 scopus 로고    scopus 로고
    • GGT 2.0: versatile software for visualization and analysis of genetic data
    • van Berloo, R. (2008) GGT 2.0: versatile software for visualization and analysis of genetic data. J. Hered. 99, 232-236.
    • (2008) J. Hered. , vol.99 , pp. 232-236
    • van Berloo, R.1
  • 6
    • 82755195663 scopus 로고    scopus 로고
    • Shoot branching and leaf dissection in tomato are regulated by homologous gene modules
    • Busch, B.L., Schmitz, G., Rossmann, S., Piron, F., Ding, J., Bendahmane, A. and Theres, K. (2011) Shoot branching and leaf dissection in tomato are regulated by homologous gene modules. Plant Cell, 23, 3595-3609.
    • (2011) Plant Cell , vol.23 , pp. 3595-3609
    • Busch, B.L.1    Schmitz, G.2    Rossmann, S.3    Piron, F.4    Ding, J.5    Bendahmane, A.6    Theres, K.7
  • 7
    • 5144232519 scopus 로고    scopus 로고
    • A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L.)
    • Caldwell, D.G., McCallum, N., Shaw, P., Muehlbauer, G.J., Marshall, D.F. and Waugh, R. (2004) A structured mutant population for forward and reverse genetics in barley (Hordeum vulgare L.). Plant J. 40, 143-150.
    • (2004) Plant J. , vol.40 , pp. 143-150
    • Caldwell, D.G.1    McCallum, N.2    Shaw, P.3    Muehlbauer, G.J.4    Marshall, D.F.5    Waugh, R.6
  • 13
    • 34249770724 scopus 로고
    • A genomic library of Lycopersicon pennellii in L. esculentum: a tool for fine mapping of genes
    • Eshed, Y. and Zamir, D. (1994) A genomic library of Lycopersicon pennellii in L. esculentum: a tool for fine mapping of genes. Euphytica, 79, 175-179.
    • (1994) Euphytica , vol.79 , pp. 175-179
    • Eshed, Y.1    Zamir, D.2
  • 14
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. and Green, P. (1998a) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8, 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 15
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C. and Green, P. (1998b) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8, 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 18
    • 79953144743 scopus 로고    scopus 로고
    • The mechanisms of UV mutagenesis
    • Ikehata, H. and Ono, T. (2011) The mechanisms of UV mutagenesis. J. Radiat. Res. 52, 115-125.
    • (2011) J. Radiat. Res. , vol.52 , pp. 115-125
    • Ikehata, H.1    Ono, T.2
  • 21
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 26
    • 2542543618 scopus 로고    scopus 로고
    • In silico screening of a saturated mutation library of tomato
    • Menda, N., Semel, Y., Peled, D., Eshed, Y. and Zamir, D. (2004) In silico screening of a saturated mutation library of tomato. Plant J. 38, 861-872.
    • (2004) Plant J. , vol.38 , pp. 861-872
    • Menda, N.1    Semel, Y.2    Peled, D.3    Eshed, Y.4    Zamir, D.5
  • 30
    • 33747830026 scopus 로고
    • Artificial transmutation of the gene
    • Muller, H.J. (1927) Artificial transmutation of the gene. Science, 66, 84-87.
    • (1927) Science , vol.66 , pp. 84-87
    • Muller, H.J.1
  • 31
    • 15544388254 scopus 로고    scopus 로고
    • Transmissible and nontransmissible mutations induced by irradiating Arabidopsis thaliana pollen with gamma-rays and carbon ions
    • Naito, K., Kusaba, M., Shikazono, N., Takano, T., Tanaka, A., Tanisaka, T. and Nishimura, M. (2005) Transmissible and nontransmissible mutations induced by irradiating Arabidopsis thaliana pollen with gamma-rays and carbon ions. Genetics, 169, 881-889.
    • (2005) Genetics , vol.169 , pp. 881-889
    • Naito, K.1    Kusaba, M.2    Shikazono, N.3    Takano, T.4    Tanaka, A.5    Tanisaka, T.6    Nishimura, M.7
  • 32
    • 81055124884 scopus 로고    scopus 로고
    • Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries
    • Okabe, Y., Asamizu, E., Saito, T., Matsukura, C., Ariizumi, T., Brès, C., Rothan, C., Mizoguchi, T. and Ezura, H. (2011) Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries. Plant Cell Physiol. 52, 1994-2005.
    • (2011) Plant Cell Physiol. , vol.52 , pp. 1994-2005
    • Okabe, Y.1    Asamizu, E.2    Saito, T.3    Matsukura, C.4    Ariizumi, T.5    Brès, C.6    Rothan, C.7    Mizoguchi, T.8    Ezura, H.9
  • 35
    • 33745147174 scopus 로고    scopus 로고
    • Mutant selection of progeny of gamma-ray-irradicated rice by DNA heteroduplex cleavage using Brassica petiole extract
    • Sato, Y., Shirasawa, K., Takahashi, Y., Nishimura, M. and Nishio, T. (2006) Mutant selection of progeny of gamma-ray-irradicated rice by DNA heteroduplex cleavage using Brassica petiole extract. Breed. Sci. 56, 179-183.
    • (2006) Breed. Sci. , vol.56 , pp. 179-183
    • Sato, Y.1    Shirasawa, K.2    Takahashi, Y.3    Nishimura, M.4    Nishio, T.5
  • 36
    • 84876925570 scopus 로고    scopus 로고
    • DNA marker applications to molecular genetics and genomics in tomato
    • Shirasawa, K. and Hirakawa, H. (2013) DNA marker applications to molecular genetics and genomics in tomato. Breed. Sci. 63, 21-30.
    • (2013) Breed. Sci. , vol.63 , pp. 21-30
    • Shirasawa, K.1    Hirakawa, H.2
  • 39
    • 84890501120 scopus 로고    scopus 로고
    • Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato
    • Shirasawa, K., Fukuoka, H., Matsunaga, H., Kobayashi, Y., Kobayashi, I., Hirakawa, H., Isobe, S. and Tabata, S. (2013) Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato. DNA Res. 20, 593-603.
    • (2013) DNA Res. , vol.20 , pp. 593-603
    • Shirasawa, K.1    Fukuoka, H.2    Matsunaga, H.3    Kobayashi, Y.4    Kobayashi, I.5    Hirakawa, H.6    Isobe, S.7    Tabata, S.8
  • 41
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 44
    • 79953862774 scopus 로고    scopus 로고
    • Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing
    • Uchida, N., Sakamoto, T., Kurata, T. and Tasaka, M. (2011) Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing. Plant Cell Physiol. 52, 716-722.
    • (2011) Plant Cell Physiol. , vol.52 , pp. 716-722
    • Uchida, N.1    Sakamoto, T.2    Kurata, T.3    Tasaka, M.4
  • 45
    • 64849083125 scopus 로고    scopus 로고
    • CNV-seq, a new method to detect copy number variation using high-throughput sequencing
    • Xie, C. and Tammi, M.T. (2009) CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinformatics, 10, 80.
    • (2009) BMC Bioinformatics , vol.10 , pp. 80
    • Xie, C.1    Tammi, M.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.