MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice

Molecular Genetics and Genomics

Volumn 279, Issue 3, 2008, Pages 213-223

  Suzuki, Tadzunu ^a   Eiguchi, Mitsugu ^a   Kumamaru, Toshihiro ^b   Satoh, Hikaru ^b   Matsusaka, Hiroaki ^b   Moriguchi, Kazuki ^a,c   Nagato, Yasuo ^d   Kurata, Nori ^a,e  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

^b KYUSHU UNIVERSITY   (Japan)

^c HIROSHIMA UNIVERSITY   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

High throughput TILLING; MNU mutagenesis; Rice; SNP detection; Zygote cell

Indexed keywords

METHYLNITROSOUREA;

ARTICLE; CALCULATION; GEL ELECTROPHORESIS; GENE IDENTIFICATION; GENE MUTATION; GENE SEQUENCE; GENETIC SCREENING; HIGH THROUGHPUT SCREENING; MUTAGENESIS; MUTATION RATE; NONHUMAN; PRIORITY JOURNAL; RICE; SINGLE NUCLEOTIDE POLYMORPHISM; ZYGOTE;

ALLELES; BASE SEQUENCE; DNA MUTATIONAL ANALYSIS; DNA PRIMERS; DNA, PLANT; GENES, PLANT; GENETIC TECHNIQUES; METHYLNITROSOUREA; MUTAGENESIS; MUTAGENS; MUTATION; ORYZA SATIVA; POLYMERASE CHAIN REACTION;

ORYZA SATIVA (JAPONICA CULTIVAR-GROUP);

EID: 39149096275     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-007-0293-2     Document Type: Article

References (34)

1. An G, Jeong DH, Jung KH, Lee S (2005a) Reverse genetic approaches for functional genomics of rice. Plant Mol Biol 59:111-123
2. An G, Lee S, Kim S-H, Kim S-R (2005b) Molecular genetics using T-DNA in rice. Plant Cell Physiol 46:14-22
3. Caldwell DG, McCallum N, Shaw P, Muehlbauer GJ, Marshall DF, Waugh R (2004) A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.). Plant J 40:143-150
4. Droc G, Ruiz M, Larmand P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Perin C (2006) OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res 34:D736-D740
5. Gilchrist EJ, Haughn GW (2005) TILLING without a plough: a new method with applications for reverse genetics. Curr Opin Plant Biol 8:211-215
6. Greene EA, Codoma CA, Taylar NF, Henikoff JG, Till BJ, Reynold SH, Enns LC, Burtner C, Johnson JE, Odden AR, Comai L, Henikoff S (2003) Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics 164:731-740
7. Haughn GW, Gilchrist EJ (2006) TILLING in the botanical garden: a reverse genetic technique feasible for all plant species. In: Teixeira da Silva JA (ed) Floriculture, ornamental and plant biotechnology: advances and topical issues, vol 1. Global science books, London, pp 476-482
8. Henikoff S, Till BJ, Comai L (2004) TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol 135:630-636
9. Hoshikawa K (1993) Anthesis, fertilization and development of caryopsis. In: Matsuo T, Hoshikawa K (eds) Science of the rice plant, vol 1: morphology. Nosan Gyoson Bunka Kyokai, Tokyo, pp 339-376
10. Jansen JG, Mohn GR, Vrieling H, van Teijlingen CM, Lohman PH, van Zeeland AA (1994) Molecular analysis of hprt gene mutations in skin fibroblasts of rats exposed in vivo to N-methyl-N-nitrosourea or N-ethyl-N-nitrosourea. Cancer Res 54:2478-2485
11. Jeong DH, An S, Park S, Kang HG, Park GG, Kim SR, Sim J, Kim YO, Kim MK, Kim SR, Kim J, Shin M, Jung M, An G (2006) Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J 45:123-132
12. Kim CM, Piao HL, Park SJ, Chon NS, Je BI, Sun B, Park SH, Park JY, Lee EJ, Kim MJ, Chung WS, Lee KH, Lee YS, Lee JJ, Won YJ, Yi GH, Nam MH, Cha YS, Yun DW, Eun MY, Han C (2004) Rapid, large-scale generation of Ds transposant lines and analysis of the Ds insertion sites in rice. Plant J 39:252-263
13. Kolesnik T, Szeverenyi I, Bachmann D, Kumar CS, Jiang S, Ramamoorthy R, Cai M, Ma ZG, Sundaresan V, Ramachandran S (2004) Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. Plant J 37:301-314
14. Kumamaru T, Satoh H, Iwata N, Omura T, Ogawa M, Tanaka K (1988) Mutants for rice storage proteins. 1. Screening of mutants for rice storage protein bodies in the starchy endosperm. Theor Appl Genet 76:11-16
15. Kurata N, Miyoshi K, Nonomura K-I, Yamazaki Y, Ito Y (2005) Rice mutants and genes related to organ development, morphogenesis and physiological traits. Plant Cell Physiol 46:48-62
16. Liu MS, Amirkhanian VD (2003) DNA fragment analysis by an affordable multiple-channel capillary electrophoresis system. Electrophoresis 24:93-95
17. Machida C, Onouchi H, Koizumi J, Hamada S, Semiarti E, Torikai S, Machida Y (1997) Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI. Proc Natl Acad Sci 94:8675-8680
18. Miyao A, Tanaka K, Murata K, Sawaki H, Takeda S, Abe K, Shinozuka Y, Onosato K, Hirochika H (2003) Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell 15:1771-1780
19. Miyoshi K, Ahn BO, Kawakatsu T, Ito Y, Itoh J-I, Nagato Y, Kurata N (2004) PLASTOCHRON1, a time keeper of leaf initiation in rice, encodes cytochrome P450. Proc Natl Acad Sci 101:875-880
20. Moriguchi K, Suzuki T, Ito Y, Yamazaki Y, Niwa Y, Kurata N (2005) Functional isolation of novel nuclear proteins showing a variety of sub-nuclear localizations. Plant Cell 17:389-403
21. Nakazaki T, Okumoto Y, Horibata A, Yamahira S, Teraishi M, Nishida H, Inoue H, Tanisaka T (2003) Mobilization of a transposon in the rice genome. Nature 421:170-172
22. Oka HI (1975) Breeding for wide adaptability. In: Matsuo T (ed) Adaptability in plants. JIBP Synthesis 6:Univ Tokyo Press, Tokyo, pp 177-185
23. Sallaud C, Gray C, Larmande P, Bes M, Piffanelli P, Piegu B, Droc G, Regad F, Bourgeois E, Meynard D, Perin C, Sabau X, Ghesquiere A, Glaszman JC, Delseny M, Guiderdoni E (2004) High throughut T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J 39:450-464
24. Satoh H, Omura T (1979) Induction of mutation by the treatment of fertilized egg cell with N-methyl-N-nitrosourea in rice. J Fac Agr Kyushu Univ 24:165-174
25. Satoh H, Omura T (1986) Mutagenesis in rice by treating fertilized egg cells with nitroso compounds. In: Rice Genetics. Proceedings of the International Rice Genetics Symposium. Agribookstore, Arlington, pp 707-717
26. Satoh H, Nishi A, Fujita N, Kubo A, Nakamura Y, Kawasaki T, Okita TW (2003) Isolation and characterization of starch mutants in rice. J Appl Glycosci 50:225-230
27. Slade AJ, Fuerstenberg SI, Loeffler D, Steine MN, Facciotti D (2005) A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nat Biotechnol 23:75-81
28. Suzuki T, Eiguchi M, Satoh H, Kumamaru T, Kurata N (2005) A modified TILLING system for rice mutant screening. Rice Genet Newsl 22:89-91
29. Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S (2003) Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res 13:524-530
30. Till BJ, Reynolds SH, Weil C, Springer N, Burtner C, Young K, Bowers E, Codomo CA, Enns LC, Odden AR, Greene EA, Comai L, Henikoff S (2004) Discovery of induced point mutations in maize genes by TILLING. BMC Plant Biol 4:12. doi: 10.1186/1471-2229-4-12
31. Till BJ, Cooper J, Tai TH, Colowit P, Greene EA, Henikoff S, Comai L (2007) Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol 7:19
32. Tsugane K, Maekawa M, Takagi K, Takahara H, Qian Q, Eun CH, Iida S (2006) An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. Plant J 45:46-57
33. Wu C, Li X, Yuan W, Chen G, Killian A, Li J, Xu C, Li X, Zhou DX, Wang S, Zhang Q (2003) Development of enhancer trap lines for functional analysis of the rice genome. Plant J 35:418-427
34. Wu J-L, Wu C, Lei C, Baraoidan M, Bordeos A, Madamba MRS, Ramos-Pamplona M, Mauleon R, Portugal A, Ulat VJ, Bruskiewich R, Wang G, Leach J, Khush G, Leung H (2005) Chemical- and irradiation-induced mutants of indica rice IR64 for forward and reverse genetics. Plant Mol Biol 59:85-97