-
1
-
-
33645582710
-
Aeromonadales ord. nov
-
Brenner D, Krieg N, Staley J, Garrity G, Boone D, De Vos P, editors. Bergey's Manual® Syst. Bacteriol. SE - 12. Springer US.
-
Martin-Carnahan A, Joseph S. Aeromonadales ord. nov. In: Brenner D, Krieg N, Staley J, Garrity G, Boone D, De Vos P, editors. Bergey's Manual® Syst. Bacteriol. SE - 12. Springer US. 2005. p. 556-87.
-
(2005)
, pp. 556-587
-
-
Martin-Carnahan, A.1
Joseph, S.2
-
2
-
-
84920901632
-
Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
-
Colston SM, Fullmer MS, Beka L, Lamy B, Gogarten JP. Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case. MBio. 2014;5:1-13.
-
(2014)
MBio
, vol.5
, pp. 1-13
-
-
Colston, S.M.1
Fullmer, M.S.2
Beka, L.3
Lamy, B.4
Gogarten, J.P.5
-
3
-
-
85041700884
-
Chapter Three - Aeromonas
-
(Second E, editor. London: Academic
-
Percival SL, Williams DW. Chapter Three - Aeromonas. In: Gray of WD (Second E, editor. London: Academic; 2014. p. 49-64.
-
(2014)
Gray of WD
, pp. 49-64
-
-
Percival, S.L.1
Williams, D.W.2
-
4
-
-
84987278775
-
Influence of Temperature, NaCI, and pH on the Growth of Aeromonas Hydrophila
-
Palumbo SA, Morgan DR, Buchanan RL. Influence of Temperature, NaCI, and pH on the Growth of Aeromonas Hydrophila. J Food Sci. 1985;50:1417-21.
-
(1985)
J Food Sci
, vol.50
, pp. 1417-1421
-
-
Palumbo, S.A.1
Morgan, D.R.2
Buchanan, R.L.3
-
5
-
-
84894487383
-
Effect of temperature on the growth kinetics and predictive growth model of Aeromonas hydrophila on squid (Sepioteuthis sepioidea)
-
Park S, Ha S-D. Effect of temperature on the growth kinetics and predictive growth model of Aeromonas hydrophila on squid (Sepioteuthis sepioidea). Food Sci Biotechnol. 2014;23:307-12.
-
(2014)
Food Sci Biotechnol
, vol.23
, pp. 307-312
-
-
Park, S.1
Ha, S.-D.2
-
6
-
-
0034126449
-
Aeromonas salmonicida subsp. pectinolytica subsp. nov., a new pectinase- positive subspecies isolated from a heavily polluted river
-
Pavan ME, Abbott SL, Zorzópulos J, Janda JM. Aeromonas salmonicida subsp. pectinolytica subsp. nov., a new pectinase- positive subspecies isolated from a heavily polluted river. Int J Syst Evol Microbiol. 2000;50:1119-24.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 1119-1124
-
-
Pavan, M.E.1
Abbott, S.L.2
Zorzópulos, J.3
Janda, J.M.4
-
7
-
-
74249083008
-
The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection
-
Janda JM, Abbott SL. The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection. Clin Microbiol Rev. 2010;23:35-73.
-
(2010)
Clin Microbiol Rev
, vol.23
, pp. 35-73
-
-
Janda, J.M.1
Abbott, S.L.2
-
8
-
-
84895070282
-
Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis
-
Dallaire-Dufresne S, Tanaka KH, Trudel MV, Lafaille A, Charette SJ. Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida, the causative agent of fish furunculosis. Vet Microbiol. 2014;169:1-7.
-
(2014)
Vet Microbiol
, vol.169
, pp. 1-7
-
-
Dallaire-Dufresne, S.1
Tanaka, K.H.2
Trudel, M.V.3
Lafaille, A.4
Charette, S.J.5
-
9
-
-
52949129891
-
The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen
-
Reith ME, Singh RK, Curtis B, Boyd JM, Bouevitch A, Kimball J, et al. The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen. BMC Genomics. 2008;9:427.
-
(2008)
BMC Genomics
, vol.9
, pp. 427
-
-
Reith, M.E.1
Singh, R.K.2
Curtis, B.3
Boyd, J.M.4
Bouevitch, A.5
Kimball, J.6
-
10
-
-
33751568509
-
Genome sequence of Aeromonas hydrophila ATCC 7966T: Jack of all trades
-
Seshadri R, Joseph SW, Chopra AK, Sha J, Shaw J, Graf J, et al. Genome sequence of Aeromonas hydrophila ATCC 7966T: Jack of all trades. J Bacteriol. 2006;188:8272-82.
-
(2006)
J Bacteriol
, vol.188
, pp. 8272-8282
-
-
Seshadri, R.1
Joseph, S.W.2
Chopra, A.K.3
Sha, J.4
Shaw, J.5
Graf, J.6
-
11
-
-
84875051263
-
Characterization of Aeromonas strains isolated from Indian foods using rpoD gene sequencing and whole cell protein analysis
-
Nagar V, Shashidhar R, Bandekar JR. Characterization of Aeromonas strains isolated from Indian foods using rpoD gene sequencing and whole cell protein analysis. World J Microbiol Biotechnol. 2013;29:745-52.
-
(2013)
World J Microbiol Biotechnol
, vol.29
, pp. 745-752
-
-
Nagar, V.1
Shashidhar, R.2
Bandekar, J.R.3
-
12
-
-
84936963208
-
Draft Genome Sequence of the Chilean isolate Aeromonas salmonicida strain CBA100
-
fnu062
-
Valdes N, Espinoza C, Sanhueza L, Gonzalez A, Corsini G, Tello M. Draft Genome Sequence of the Chilean isolate Aeromonas salmonicida strain CBA100. FEMS Microbiol Lett. 2015;362:fnu062.
-
(2015)
FEMS Microbiol Lett
, vol.362
-
-
Valdes, N.1
Espinoza, C.2
Sanhueza, L.3
Gonzalez, A.4
Corsini, G.5
Tello, M.6
-
13
-
-
84997776925
-
Draft Genome Sequence of Aeromonas salmonicida subsp. achromogenes AS03, an Atypical Strain Isolated from Crucian Carp (Carassius carassius) in the Republic of Korea
-
e00791-13
-
Han JE, Kim JH, Shin SP, Jun JW, Chai JY, Park SC. Draft Genome Sequence of Aeromonas salmonicida subsp. achromogenes AS03, an Atypical Strain Isolated from Crucian Carp (Carassius carassius) in the Republic of Korea. Genome Announc. 2013;1:e00791-13.
-
(2013)
Genome Announc
, vol.1
-
-
Han, J.E.1
Kim, J.H.2
Shin, S.P.3
Jun, J.W.4
Chai, J.Y.5
Park, S.C.6
-
14
-
-
84866947712
-
Multilocus genetics to reconstruct aeromonad evolution
-
Roger F, Marchandin H, Jumas-Bilak E, Kodjo A, Lamy B. Multilocus genetics to reconstruct aeromonad evolution. BMC Microbiol. 2012;12:62.
-
(2012)
BMC Microbiol
, vol.12
, pp. 62
-
-
Roger, F.1
Marchandin, H.2
Jumas-Bilak, E.3
Kodjo, A.4
Lamy, B.5
-
15
-
-
84949008538
-
AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland
-
fnv093
-
Emond-Rheault J-G, Vincent AT, Trudel MV, Frey J, Frenette M, Charette SJ. AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland. FEMS Microbiol Lett. 2015;362:fnv093.
-
(2015)
FEMS Microbiol Lett
, vol.362
-
-
Emond-Rheault, J.-G.1
Vincent, A.T.2
Trudel, M.V.3
Frey, J.4
Frenette, M.5
Charette, S.J.6
-
16
-
-
84936935226
-
Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance
-
Vincent AT, Tanaka KH, Trudel MV, Frenette M, Derome N, Charette SJ. Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance. FEMS Microbiol Lett. 2015;362:1-4.
-
(2015)
FEMS Microbiol Lett
, vol.362
, pp. 1-4
-
-
Vincent, A.T.1
Tanaka, K.H.2
Trudel, M.V.3
Frenette, M.4
Derome, N.5
Charette, S.J.6
-
17
-
-
84862908343
-
Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida
-
Charette SJ, Brochu F, Boyle B, Filion G, Tanaka KH, Derome N. Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida. J Bacteriol. 2012;194:722-3.
-
(2012)
J Bacteriol
, vol.194
, pp. 722-723
-
-
Charette, S.J.1
Brochu, F.2
Boyle, B.3
Filion, G.4
Tanaka, K.H.5
Derome, N.6
-
19
-
-
0023833021
-
DNA:DNA reassociation analysis of Aeromonas salmonicida
-
Belland RJ, Trust TJ. DNA:DNA reassociation analysis of Aeromonas salmonicida. J Gen Microbiol. 1988;134:307-15.
-
(1988)
J Gen Microbiol
, vol.134
, pp. 307-315
-
-
Belland, R.J.1
Trust, T.J.2
-
20
-
-
0034284255
-
Pulsed-field gel electrophoresis analysis of Aeromonas salmonicida ssp. salmonicida
-
García JA, Larsen JL, Dalsgaard I, Pedersen K. Pulsed-field gel electrophoresis analysis of Aeromonas salmonicida ssp. salmonicida. FEMS Microbiol Lett. 2000;190:163-6.
-
(2000)
FEMS Microbiol Lett
, vol.190
, pp. 163-166
-
-
García, J.A.1
Larsen, J.L.2
Dalsgaard, I.3
Pedersen, K.4
-
21
-
-
0029028505
-
Phenotypic and molecular characteristics of Aeromonas salmonicida subsp. salmonicida isolated in southern and northern Finland
-
Hänninen ML, Ridell J, Hirvelä-Koski V. Phenotypic and molecular characteristics of Aeromonas salmonicida subsp. salmonicida isolated in southern and northern Finland. J Appl Bacteriol. 1995;79:12-21.
-
(1995)
J Appl Bacteriol
, vol.79
, pp. 12-21
-
-
Hänninen, M.L.1
Ridell, J.2
Hirvelä-Koski, V.3
-
22
-
-
0034645721
-
Genetic diversity of the fish pathogen Aeromonas salmonicida demonstrated by random amplified polymorphic DNA and pulsed-field gel electrophoresis analyses
-
O'hIci B, Olivier G, Powell R. Genetic diversity of the fish pathogen Aeromonas salmonicida demonstrated by random amplified polymorphic DNA and pulsed-field gel electrophoresis analyses. Dis Aquat Organ. 2000;39:109-19.
-
(2000)
Dis Aquat Organ
, vol.39
, pp. 109-119
-
-
O'hIci, B.1
Olivier, G.2
Powell, R.3
-
23
-
-
0031715226
-
Physical map of the chromosome of Aeromonas salmonicida and genomic comparisons between Aeromonas strains
-
Umelo E, Trust TJ. Physical map of the chromosome of Aeromonas salmonicida and genomic comparisons between Aeromonas strains. Microbiology. 1998;144:2141-9.
-
(1998)
Microbiology
, vol.144
, pp. 2141-2149
-
-
Umelo, E.1
Trust, T.J.2
-
24
-
-
0025236295
-
Restriction endonuclease fingerprinting analysis of Canadian isolates of Aeromonas salmonicida
-
McCormick WA, Stevenson RM, MacInnes JI. Restriction endonuclease fingerprinting analysis of Canadian isolates of Aeromonas salmonicida. Can J Microbiol. 1990;36:24-32.
-
(1990)
Can J Microbiol
, vol.36
, pp. 24-32
-
-
McCormick, W.A.1
Stevenson, R.M.2
MacInnes, J.I.3
-
25
-
-
33746397038
-
Atypical strains of Aeromonas salmonicida contain multiple copies of insertion element ISAsa4 useful as a genetic marker and a target for PCR assay
-
Nilsson WB, Gudkovs N, Strom MS. Atypical strains of Aeromonas salmonicida contain multiple copies of insertion element ISAsa4 useful as a genetic marker and a target for PCR assay. Dis Aquat Organ. 2006;70:209-17.
-
(2006)
Dis Aquat Organ
, vol.70
, pp. 209-217
-
-
Nilsson, W.B.1
Gudkovs, N.2
Strom, M.S.3
-
26
-
-
84916210013
-
Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins. Vet
-
Emond-Rheault J-G, Vincent AT, Trudel MV, Brochu F, Tanaka KH, Attéré SA, et al. Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins. Vet. Microbiol. 2015;175:68-76.
-
(2015)
Microbiol
, vol.175
, pp. 68-76
-
-
Emond-Rheault, J.-G.1
Vincent, A.T.2
Trudel, M.V.3
Brochu, F.4
Tanaka, K.H.5
Attéré, S.A.6
-
27
-
-
0001760789
-
Taxonomy of Fish Associated Aeromonas spp., with the Description of Aeromonas salmonicida subsp. smithia subsp. nov
-
Austin DA, McIntosh D, Austin B. Taxonomy of Fish Associated Aeromonas spp., with the Description of Aeromonas salmonicida subsp. smithia subsp. nov. Syst Appl Microbiol. 1989;11:277-90.
-
(1989)
Syst Appl Microbiol
, vol.11
, pp. 277-290
-
-
Austin, D.A.1
McIntosh, D.2
Austin, B.3
-
28
-
-
84874964024
-
Molecular Detection and Characterization of Furunculosis and Other Aeromonas Fish Infections
-
Carvalho E, editor
-
Beaz-Hidalgo R, Figueras MJ. Molecular Detection and Characterization of Furunculosis and Other Aeromonas Fish Infections. In: Carvalho E, editor. Heal. Environ. Aquac. Intech. 2012. p. 97-132.
-
(2012)
Heal. Environ. Aquac. Intech.
, pp. 97-132
-
-
Beaz-Hidalgo, R.1
Figueras, M.J.2
-
29
-
-
32044456966
-
Modulation of juvenile brook trout (Salvelinus fontinalis) cellular immune system after Aeromonas salmonicida challenge
-
Dautremepuits C, Fortier M, Croisetiere S, Belhumeur P, Fournier M. Modulation of juvenile brook trout (Salvelinus fontinalis) cellular immune system after Aeromonas salmonicida challenge. Vet Immunol Immunopathol. 2006;110:27-36.
-
(2006)
Vet Immunol Immunopathol
, vol.110
, pp. 27-36
-
-
Dautremepuits, C.1
Fortier, M.2
Croisetiere, S.3
Belhumeur, P.4
Fournier, M.5
-
30
-
-
33646762425
-
Contribution of the type III secretion system (TTSS) to virulence of Aeromonas salmonicida subsp. salmonicida
-
Dacanay A, Knickle L, Solanky KS, Boyd JM, Walter JA, Brown LL, et al. Contribution of the type III secretion system (TTSS) to virulence of Aeromonas salmonicida subsp. salmonicida. Microbiology. 2006;152:1847-56.
-
(2006)
Microbiology
, vol.152
, pp. 1847-1856
-
-
Dacanay, A.1
Knickle, L.2
Solanky, K.S.3
Boyd, J.M.4
Walter, J.A.5
Brown, L.L.6
-
31
-
-
62349120035
-
Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins
-
Metpally RPR, Reddy BVB. Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins. BMC Genomics. 2009;10:11.
-
(2009)
BMC Genomics
, vol.10
, pp. 11
-
-
Metpally, R.P.R.1
Reddy, B.V.B.2
-
32
-
-
23344439437
-
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
-
Methé BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, et al. The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A. 2005;102:10913-8.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10913-10918
-
-
Methé, B.A.1
Nelson, K.E.2
Deming, J.W.3
Momen, B.4
Melamud, E.5
Zhang, X.6
-
34
-
-
44449173133
-
Genomics of an extreme psychrophile, Psychromonas ingrahamii
-
Riley M, Staley JT, Danchin A, Wang TZ, Brettin TS, Hauser LJ, et al. Genomics of an extreme psychrophile, Psychromonas ingrahamii. BMC Genomics. 2008;9:210.
-
(2008)
BMC Genomics
, vol.9
, pp. 210
-
-
Riley, M.1
Staley, J.T.2
Danchin, A.3
Wang, T.Z.4
Brettin, T.S.5
Hauser, L.J.6
-
35
-
-
0038824870
-
Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii
-
Saunders NFW, Thomas T, Curmi PMG, Mattick JS, Kuczek E, Slade R, et al. Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res. 2003;13:1580-8.
-
(2003)
Genome Res
, vol.13
, pp. 1580-1588
-
-
Saunders, N.F.W.1
Thomas, T.2
Curmi, P.M.G.3
Mattick, J.S.4
Kuczek, E.5
Slade, R.6
-
36
-
-
33645498972
-
Psychrophilic microorganisms: challenges for life
-
D'Amico S, Collins T, Marx J-C, Feller G, Gerday C. Psychrophilic microorganisms: challenges for life. EMBO Rep. 2006;7:385-9.
-
(2006)
EMBO Rep
, vol.7
, pp. 385-389
-
-
D'Amico, S.1
Collins, T.2
Marx, J.-C.3
Feller, G.4
Gerday, C.5
-
37
-
-
78049417357
-
Higher tRNA diversity in thermophilic bacteria: A possible adaptation to growth at high temperature
-
Satapathy SS, Dutta M, Ray SK. Higher tRNA diversity in thermophilic bacteria: A possible adaptation to growth at high temperature. Microbiol Res. 2010;165:609-16.
-
(2010)
Microbiol Res
, vol.165
, pp. 609-616
-
-
Satapathy, S.S.1
Dutta, M.2
Ray, S.K.3
-
38
-
-
84909641337
-
Improvement in the DNA sequencing of genomes bearing long repeated elements
-
Vincent AT, Boyle B, Derome N, Charette SJ. Improvement in the DNA sequencing of genomes bearing long repeated elements. J Microbiol Methods. 2014;107:186-8.
-
(2014)
J Microbiol Methods
, vol.107
, pp. 186-188
-
-
Vincent, A.T.1
Boyle, B.2
Derome, N.3
Charette, S.J.4
-
39
-
-
84895070932
-
IS-mediated loss of virulence by Aeromonas salmonicida: A tangible piece of an evolutionary puzzle
-
Tanaka KH, Frenette M, Charette SJ. IS-mediated loss of virulence by Aeromonas salmonicida: A tangible piece of an evolutionary puzzle. Mob Genet Elements. 2013;3:e23498.
-
(2013)
Mob Genet Elements
, vol.3
, pp. e23498
-
-
Tanaka, K.H.1
Frenette, M.2
Charette, S.J.3
-
40
-
-
80051826510
-
Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions
-
Daher RK, Filion G, Tan SGE, Dallaire-Dufresne S, Paquet VE, Charette SJ. Alteration of virulence factors and rearrangement of pAsa5 plasmid caused by the growth of Aeromonas salmonicida in stressful conditions. Vet Microbiol. 2011;152:353-60.
-
(2011)
Vet Microbiol
, vol.152
, pp. 353-360
-
-
Daher, R.K.1
Filion, G.2
Tan, S.G.E.3
Dallaire-Dufresne, S.4
Paquet, V.E.5
Charette, S.J.6
-
41
-
-
84863262539
-
An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System
-
Tanaka KH, Dallaire-Dufresne S, Daher RK, Frenette M, Charette SJ. An Insertion Sequence-Dependent Plasmid Rearrangement in Aeromonas salmonicida Causes the Loss of the Type Three Secretion System. PLoS One. 2012;7:e33725.
-
(2012)
PLoS One
, vol.7
, pp. e33725
-
-
Tanaka, K.H.1
Dallaire-Dufresne, S.2
Daher, R.K.3
Frenette, M.4
Charette, S.J.5
-
42
-
-
64549096377
-
Genetic characterization of pAsa6, a new plasmid from Aeromonas salmonicida subsp. salmonicida that encodes a type III effector protein AopH homolog
-
Najimi M, Balado M, Lemos ML, Osorio CR. Genetic characterization of pAsa6, a new plasmid from Aeromonas salmonicida subsp. salmonicida that encodes a type III effector protein AopH homolog. Plasmid. 2009;61:176-81.
-
(2009)
Plasmid
, vol.61
, pp. 176-181
-
-
Najimi, M.1
Balado, M.2
Lemos, M.L.3
Osorio, C.R.4
-
43
-
-
0028284552
-
Mutagenesis of the paracrystalline surface protein array of Aeromonas salmonicida by endogenous insertion elements
-
Gustafson CE, Chu S, Trust TJ. Mutagenesis of the paracrystalline surface protein array of Aeromonas salmonicida by endogenous insertion elements. J Mol Biol. 1994;237:452-63.
-
(1994)
J Mol Biol
, vol.237
, pp. 452-463
-
-
Gustafson, C.E.1
Chu, S.2
Trust, T.J.3
-
44
-
-
0025741658
-
Structure of the tetragonal surface virulence array protein and gene of Aeromonas salmonicida
-
Chu S, Cavaignac S, Feutrier J, Phipps BM, Kostrzynska M, Kay WW, et al. Structure of the tetragonal surface virulence array protein and gene of Aeromonas salmonicida. J Biol Chem. 1991;266:15258-65.
-
(1991)
J Biol Chem
, vol.266
, pp. 15258-15265
-
-
Chu, S.1
Cavaignac, S.2
Feutrier, J.3
Phipps, B.M.4
Kostrzynska, M.5
Kay, W.W.6
-
45
-
-
84875675063
-
Clustering subspecies of Aeromonas salmonicida using IS630 typing
-
Studer N, Frey J, Vanden BP. Clustering subspecies of Aeromonas salmonicida using IS630 typing. BMC Microbiol. 2013;13:13-36.
-
(2013)
BMC Microbiol
, vol.13
, pp. 13-36
-
-
Studer, N.1
Frey, J.2
Vanden, B.P.3
-
46
-
-
84907223852
-
Tracking antibiotic resistance
-
Beatson SA, Walker MJ. Tracking antibiotic resistance. Science. 2014;345:1454-5.
-
(2014)
Science
, vol.345
, pp. 1454-1455
-
-
Beatson, S.A.1
Walker, M.J.2
-
47
-
-
33748771725
-
AopP, a type III effector protein of Aeromonas salmonicida, inhibits the NF-kappaB signalling pathway
-
Fehr D, Casanova C, Liverman A, Blazkova H, Orth K, Dobbelaere D, et al. AopP, a type III effector protein of Aeromonas salmonicida, inhibits the NF-kappaB signalling pathway. Microbiology. 2006;152:2809-18.
-
(2006)
Microbiology
, vol.152
, pp. 2809-2818
-
-
Fehr, D.1
Casanova, C.2
Liverman, A.3
Blazkova, H.4
Orth, K.5
Dobbelaere, D.6
-
48
-
-
84925228858
-
Bacterial insertion sequences: Their genomic impact and diversity
-
Siguier P, Gourbeyre E, Chandler M. Bacterial insertion sequences: Their genomic impact and diversity. FEMS Microbiol Rev. 2014;38:865-91.
-
(2014)
FEMS Microbiol Rev
, vol.38
, pp. 865-891
-
-
Siguier, P.1
Gourbeyre, E.2
Chandler, M.3
-
49
-
-
0032537589
-
The pyruvate dehydrogenase multi-enzyme complex from Gram-negative bacteria
-
De Kok A, Hengeveld AF, Martin A, Westphal AH. The pyruvate dehydrogenase multi-enzyme complex from Gram-negative bacteria. Biochim Biophys Acta. 1998;1385:353-66.
-
(1998)
Biochim Biophys Acta
, vol.1385
, pp. 353-366
-
-
Kok, A.1
Hengeveld, A.F.2
Martin, A.3
Westphal, A.H.4
-
50
-
-
84924243810
-
Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments
-
Dziewit L, Bartosik D. Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments. Front Microbiol. 2014;5:596.
-
(2014)
Front Microbiol
, vol.5
, pp. 596
-
-
Dziewit, L.1
Bartosik, D.2
-
51
-
-
33749633949
-
Proteomic analysis of cold adaptation in a Siberian permafrost bacterium--Exiguobacterium sibiricum 255-15 by two-dimensional liquid separation coupled with mass spectrometry
-
Qiu Y, Kathariou S, Lubman DM. Proteomic analysis of cold adaptation in a Siberian permafrost bacterium--Exiguobacterium sibiricum 255-15 by two-dimensional liquid separation coupled with mass spectrometry. Proteomics. 2006;6:5221-33.
-
(2006)
Proteomics
, vol.6
, pp. 5221-5233
-
-
Qiu, Y.1
Kathariou, S.2
Lubman, D.M.3
-
52
-
-
17444407902
-
High-temperature-induced transposition of insertion elements in Burkholderia multivorans ATCC 17616
-
Ohtsubo Y, Genka H, Komatsu H, Nagata Y, Tsuda M. High-temperature-induced transposition of insertion elements in Burkholderia multivorans ATCC 17616. Appl Environ Microbiol. 2005;71:1822-8.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1822-1828
-
-
Ohtsubo, Y.1
Genka, H.2
Komatsu, H.3
Nagata, Y.4
Tsuda, M.5
-
53
-
-
54949129791
-
High rate of recent transposable element-induced adaptation in Drosophila melanogaster
-
González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. PLoS Biol. 2008;6:2109-29.
-
(2008)
PLoS Biol
, vol.6
, pp. 2109-2129
-
-
González, J.1
Lenkov, K.2
Lipatov, M.3
Macpherson, J.M.4
Petrov, D.A.5
-
54
-
-
70350248065
-
The adaptive role of transposable elements in the Drosophila genome
-
González J, Petrov DA. The adaptive role of transposable elements in the Drosophila genome. Gene. 2009;448:124-33.
-
(2009)
Gene
, vol.448
, pp. 124-133
-
-
González, J.1
Petrov, D.A.2
-
55
-
-
84922566574
-
Transposable element islands facilitate adaptation to novel environments in an invasive species
-
Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, et al. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nat Commun. 2014;5:5495.
-
(2014)
Nat Commun
, vol.5
, pp. 5495
-
-
Schrader, L.1
Kim, J.W.2
Ence, D.3
Zimin, A.4
Klein, A.5
Wyschetzki, K.6
-
56
-
-
70349448264
-
Outbreaks of an ulcerative and haemorrhagic disease in Arctic char Salvelinus alpinus caused by Aeromonas salmonicida subsp. smithia
-
Goldschmidt-Clermont E, Hochwartner O, Demarta A, AP C, Frey J. Outbreaks of an ulcerative and haemorrhagic disease in Arctic char Salvelinus alpinus caused by Aeromonas salmonicida subsp. smithia. Dis Aquat Organ. 2009;86:81-6.
-
(2009)
Dis Aquat Organ
, vol.86
, pp. 81-86
-
-
Goldschmidt-Clermont, E.1
Hochwartner, O.2
Demarta, A.3
AP, C.4
Frey, J.5
-
57
-
-
0023405084
-
Cloning of the gene for the surface array protein of Aeromonas salmonicida and evidence linking loss of expression with genetic deletion
-
Belland RJ, Trust TJ. Cloning of the gene for the surface array protein of Aeromonas salmonicida and evidence linking loss of expression with genetic deletion. J Bacteriol. 1987;169:4086-91.
-
(1987)
J Bacteriol
, vol.169
, pp. 4086-4091
-
-
Belland, R.J.1
Trust, T.J.2
-
58
-
-
80053051078
-
Prevalence, characterization, and antimicrobial resistance of Aeromonas strains from various retail food products in Mumbai
-
Nagar V, Shashidhar R, Bandekar JR. Prevalence, characterization, and antimicrobial resistance of Aeromonas strains from various retail food products in Mumbai. India J Food Sci. 2011;76:M486-92.
-
(2011)
India J Food Sci
, vol.76
, pp. M486-M492
-
-
Nagar, V.1
Shashidhar, R.2
Bandekar, J.R.3
-
59
-
-
0342981800
-
Molecular and phenotypic methods for the characterization of atypical Aeromonas salmonicida
-
Hänninen ML, Hirvelä-Koski V. Molecular and phenotypic methods for the characterization of atypical Aeromonas salmonicida. Vet Microbiol. 1997;56:147-58.
-
(1997)
Vet Microbiol
, vol.56
, pp. 147-158
-
-
Hänninen, M.L.1
Hirvelä-Koski, V.2
-
60
-
-
84928994303
-
A5-miseq : an updated pipeline to assemble microbial genomes from Illumina MiSeq data
-
Coil D, Jospin G, Darling AE. A5-miseq : an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 2014;31(4):587-9.
-
(2014)
Bioinformatics
, vol.31
, Issue.4
, pp. 587-589
-
-
Coil, D.1
Jospin, G.2
Darling, A.E.3
-
61
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, et al. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 2002;12:1611-8.
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
-
62
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
63
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
64
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo A, Gribaldo S. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol. 2010;10:210.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 210
-
-
Criscuolo, A.1
Gribaldo, S.2
-
65
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:1312-3.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
66
-
-
84864453108
-
jModelTest 2: more models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9:772.
-
(2012)
Nat Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
67
-
-
36849014457
-
An empirical test of the midpoint rooting method
-
Hess PN, De Moraes Russo CA. An empirical test of the midpoint rooting method. Biol J Linn Soc. 2007;92:669-74.
-
(2007)
Biol J Linn Soc
, vol.92
, pp. 669-674
-
-
Hess, P.N.1
Moraes Russo, C.A.2
-
68
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003;4:41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
-
69
-
-
79959240236
-
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
-
Galardini M, Biondi EG, Bazzicalupo M, Mengoni A. CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes. Source Code Biol Med. 2011;6:11.
-
(2011)
Source Code Biol Med
, vol.6
, pp. 11
-
-
Galardini, M.1
Biondi, E.G.2
Bazzicalupo, M.3
Mengoni, A.4
-
71
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet. 2000;16:276-7.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
72
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997;25:955-64.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
73
-
-
84907095419
-
R: A Language and Environment for Statistical Computing
-
Vienna, Austria
-
Team RC. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Found. Stat. Comput; 2013.
-
(2013)
R Found. Stat. Comput
-
-
-
74
-
-
0003766436
-
MacClade 4: analysis of phylogeny and character evolution
-
Version 4.0. Massachusetts: Sinauer Sunderl; 2000.
-
Maddison WP, Maddison DR. MacClade 4: analysis of phylogeny and character evolution. Version 4.0. Massachusetts: Sinauer Sunderl; 2000.
-
(2000)
-
-
Maddison, W.P.1
Maddison, D.R.2
-
75
-
-
77958495156
-
The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae
-
Brouard JS, Otis C, Lemieux C, Turmel M. The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae. Genome Biol Evol. 2010;2:240-56.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 240-256
-
-
Brouard, J.S.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
76
-
-
84964694065
-
Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae
-
Turmel M, Otis C, Lemieux C. Dynamic Evolution of the Chloroplast Genome in the Green Algal Classes Pedinophyceae and Trebouxiophyceae. Genome Biol Evol. 2015;7:2062-82.
-
(2015)
Genome Biol Evol
, vol.7
, pp. 2062-2082
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
77
-
-
33644873699
-
ISfinder: the reference centre for bacterial insertion sequences
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 2006;34:D32-6.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D32-D36
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
78
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114-20.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
79
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754-60.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
80
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25:2078-9.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
81
-
-
23044471766
-
An algorithm for progressive multiple alignment of sequences with insertions
-
Löytynoja A, Goldman N. An algorithm for progressive multiple alignment of sequences with insertions. Proc Natl Acad Sci U S A. 2005;102:10557-62.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10557-10562
-
-
Löytynoja, A.1
Goldman, N.2
-
83
-
-
84929649449
-
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
-
Smith MD, Wertheim JO, Weaver S, Murrell B, Scheffler K, Kosakovsky Pond SL. Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection. Mol Biol Evol. 2015;32:1342-53.
-
(2015)
Mol Biol Evol
, vol.32
, pp. 1342-1353
-
-
Smith, M.D.1
Wertheim, J.O.2
Weaver, S.3
Murrell, B.4
Scheffler, K.5
Kosakovsky Pond, S.L.6
|