-
1
-
-
0022914759
-
Compositional constraints and genome evolution
-
Bernardi G., Bernardi G. Compositional constraints and genome evolution. J Mol Evol 1986, 24:1-11.
-
(1986)
J Mol Evol
, vol.24
, pp. 1-11
-
-
Bernardi, G.1
Bernardi, G.2
-
2
-
-
0019308408
-
The influence of codon context on genetic code translation
-
Bossi L., Roth J.R. The influence of codon context on genetic code translation. Nature 1980, 286:123-127.
-
(1980)
Nature
, vol.286
, pp. 123-127
-
-
Bossi, L.1
Roth, J.R.2
-
3
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M. The selection-mutation-drift theory of synonymous codon usage. Genetics 1991, 129:897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
4
-
-
33749022803
-
Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation
-
Das S., Paul S., Bag S.K., Dutta C. Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation. BMC Genomics 2006, 7:186.
-
(2006)
BMC Genomics
, vol.7
, pp. 186
-
-
Das, S.1
Paul, S.2
Bag, S.K.3
Dutta, C.4
-
5
-
-
0030564828
-
Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
-
Dong H., Nilsson L., Kurland C.G. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol 1996, 260:649-663.
-
(1996)
J Mol Biol
, vol.260
, pp. 649-663
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.G.3
-
6
-
-
77649180548
-
Positive correlation of bacterial genome GC% with the number of different anticodons used by the genome to decode all the codons
-
Dubey B., Buragohain A.K., Ray S.K. Positive correlation of bacterial genome GC% with the number of different anticodons used by the genome to decode all the codons. Icfai Univ J Biotech 2009, III:39-47.
-
(2009)
Icfai Univ J Biotech
, vol.3
, pp. 39-47
-
-
Dubey, B.1
Buragohain, A.K.2
Ray, S.K.3
-
7
-
-
0030900384
-
Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
-
Galtier N., Lobry J.R. Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 1997, 44:632-636.
-
(1997)
J Mol Evol
, vol.44
, pp. 632-636
-
-
Galtier, N.1
Lobry, J.R.2
-
8
-
-
0033616712
-
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
-
Haney P.J., Badger J.H., Buldak G.L., Reich C.I., Woese C.R., Olsen G.J. Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. Proc Natl Acad Sci USA 1999, 96:3578-3583.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3578-3583
-
-
Haney, P.J.1
Badger, J.H.2
Buldak, G.L.3
Reich, C.I.4
Woese, C.R.5
Olsen, G.J.6
-
9
-
-
0040626487
-
Cold shock response and low temperature adaptation in psychrotrophic bacteria
-
Hébraud M., Potier P. Cold shock response and low temperature adaptation in psychrotrophic bacteria. J Mol Microbiol Biotechnol 1999, 1:211-219.
-
(1999)
J Mol Microbiol Biotechnol
, vol.1
, pp. 211-219
-
-
Hébraud, M.1
Potier, P.2
-
10
-
-
19644401538
-
Genomic and proteomic adaptations to growth at high temperature
-
Hickey D.A., Singer G.A.C. Genomic and proteomic adaptations to growth at high temperature. Genome Biology 2004, 5:117.
-
(2004)
Genome Biology
, vol.5
, pp. 117
-
-
Hickey, D.A.1
Singer, G.A.C.2
-
11
-
-
54149105223
-
Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage
-
Higgs P.G., Ran W. Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage. Mol Biol Evol 2008, 25:2279-2291.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2279-2291
-
-
Higgs, P.G.1
Ran, W.2
-
12
-
-
0035819839
-
High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes
-
Hurst L.D., Merchant A.R. High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes. Proc R Soc London 2001, 268:493-497.
-
(2001)
Proc R Soc London
, vol.268
, pp. 493-497
-
-
Hurst, L.D.1
Merchant, A.R.2
-
13
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
Kanaya S., Yamada Y., Kudo Y., Ikemura T. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 1999, 238:143-155.
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
14
-
-
0034006790
-
Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine
-
Lao P.J., Forsdyke D.R. Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine. Genome Res 2000, 10:228-236.
-
(2000)
Genome Res
, vol.10
, pp. 228-236
-
-
Lao, P.J.1
Forsdyke, D.R.2
-
15
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genome sequences
-
Lowe T.M., Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genome sequences. Nucleic Acid Res 1997, 25:955-964.
-
(1997)
Nucleic Acid Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
16
-
-
0036796799
-
Synonymous codon usage is subject to selection in thermophilic bacteria
-
Lynn D.J., Singer G.A.C., Hickey D.A. Synonymous codon usage is subject to selection in thermophilic bacteria. Nucleic Acid Res 2002, 30:4272-4277.
-
(2002)
Nucleic Acid Res
, vol.30
, pp. 4272-4277
-
-
Lynn, D.J.1
Singer, G.A.C.2
Hickey, D.A.3
-
17
-
-
0002322469
-
On a test of whether one of two random variables is stochastically larger than the other
-
Mann H.B., Whitney D.R. On a test of whether one of two random variables is stochastically larger than the other. Annals of Mathematical Statistics 1947, 18:50-60.
-
(1947)
Annals of Mathematical Statistics
, vol.18
, pp. 50-60
-
-
Mann, H.B.1
Whitney, D.R.2
-
18
-
-
0038583819
-
Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures
-
Nakashima H., Fukuchi S., Nishikawa K. Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures. J Biochem 2003, 133:507-513.
-
(2003)
J Biochem
, vol.133
, pp. 507-513
-
-
Nakashima, H.1
Fukuchi, S.2
Nishikawa, K.3
-
19
-
-
0026574207
-
Recent evidence for evolution of the genetic code
-
Osawa S., Jukes T.H., Watanabe K., Muto A. Recent evidence for evolution of the genetic code. Microbiol Mol Biol Rev 1992, 56:229-264.
-
(1992)
Microbiol Mol Biol Rev
, vol.56
, pp. 229-264
-
-
Osawa, S.1
Jukes, T.H.2
Watanabe, K.3
Muto, A.4
-
20
-
-
1542297746
-
Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes
-
Paz A., Mester D., Baca I., Nevo E., Korol A. Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes. Proc Natl Acad Sci USA 2004, 101:2951-2956.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 2951-2956
-
-
Paz, A.1
Mester, D.2
Baca, I.3
Nevo, E.4
Korol, A.5
-
21
-
-
4644280499
-
Solving the riddle of codon usage preferences: a test for translational selection
-
Reis M., Savva R., Wernisch L. Solving the riddle of codon usage preferences: a test for translational selection. Nucleic Acid Res 2004, 32:5036-5044.
-
(2004)
Nucleic Acid Res
, vol.32
, pp. 5036-5044
-
-
Reis, M.1
Savva, R.2
Wernisch, L.3
-
22
-
-
8744310123
-
Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
-
Rocha E.P.C. Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res 2004, 14:2279-2286.
-
(2004)
Genome Res
, vol.14
, pp. 2279-2286
-
-
Rocha, E.P.C.1
-
23
-
-
77649190133
-
-
Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterial groups: α-Proteobacteria and Tenericutes exhibit strong positive correlation, Microbiol Res, DOI
-
Satapathy SS, Dutta M, Ray SK. Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterial groups: α-Proteobacteria and Tenericutes exhibit strong positive correlation, Microbiol Res, DOI: , 2009. http://dx.doi.org/10.1016/j.micres.2009.05.005.
-
(2009)
-
-
Satapathy, S.S.1
Dutta, M.2
Ray, S.K.3
-
24
-
-
14544277543
-
Variation in the strength of selected codon usage bias among bacteria
-
Sharp P.M., Bailes E., Grocock R.J., Peden J.F., Sockett R.E. Variation in the strength of selected codon usage bias among bacteria. Nucleic Acid Res 2005, 33:1141-1153.
-
(2005)
Nucleic Acid Res
, vol.33
, pp. 1141-1153
-
-
Sharp, P.M.1
Bailes, E.2
Grocock, R.J.3
Peden, J.F.4
Sockett, R.E.5
-
25
-
-
0242290154
-
Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content
-
Singer G.A.C., Hickey D.A. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content. Gene 2003, 317:39-47.
-
(2003)
Gene
, vol.317
, pp. 39-47
-
-
Singer, G.A.C.1
Hickey, D.A.2
-
26
-
-
38149128080
-
Protein thermostability in archaea and eubacteria
-
Trivedi S., Gehlot H.S., Rao S.R. Protein thermostability in archaea and eubacteria. Genet Mol Res 2006, 5:816-827.
-
(2006)
Genet Mol Res
, vol.5
, pp. 816-827
-
-
Trivedi, S.1
Gehlot, H.S.2
Rao, S.R.3
-
27
-
-
0036606141
-
Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes
-
Wang H., Hickey D.A. Evidence for strong selective constraint acting on the nucleotide composition of 16S ribosomal RNA genes. Nucleic Acid Res 2002, 30:2501-2507.
-
(2002)
Nucleic Acid Res
, vol.30
, pp. 2501-2507
-
-
Wang, H.1
Hickey, D.A.2
-
28
-
-
0000238430
-
Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of anticodon
-
Yokoyama S., Watanabe T., Murao K., Ishikura H., Yamaizumi Z., Nishimura S., et al. Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of anticodon. Proc Natl Acad Sci USA 1985, 82:4905-4909.
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 4905-4909
-
-
Yokoyama, S.1
Watanabe, T.2
Murao, K.3
Ishikura, H.4
Yamaizumi, Z.5
Nishimura, S.6
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