Physical map of the chromosome of Aeromonas salmonicida and genomic comparisons between Aeromonas strains

Microbiology

Volumn 144, Issue 8, 1998, Pages 2141-2149

  Umelo, Elizabeth ^a,b   Trust, Trevor J ^a,c  

^a UNIVERSITY OF VICTORIA   (Canada)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c ASTRAZENECA   (United Kingdom)

Author keywords

Aeromonas salmonicida; Circular chromosome; Genetic map; Genome comparison; Physical map

Indexed keywords

AEROMONAS; AEROMONAS SALMONICIDA; ARTICLE; BACTERIAL GENE; BACTERIAL VIRULENCE; CHROMOSOME MAP; GENOME; NONHUMAN; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS;

AEROMONAS SALMONICIDA;

EID: 0031715226     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-144-8-2141     Document Type: Article

References (40)

1. Austin, B. & Austin, D. A. (1993). Aeromonadaceae representatives (Aeromonas salmonicida). In Bacterial Fish Diseases: Disease in Farmed and Wild Fish, pp. 86-170. Edited by B. Austin & A. Austin. Chichester: Ellis Horwood.
2. Austin, D. A., Mclntosh, D. & Austin, B. (1989). Taxonomy of fish-associated Aeromonas spp. with the description of Aeromonas salmonicida subsp. smithia subsp. nov. Syst Appl Microbiol 11, 277-290.
3. Belland, R. J. & Trust, T. J. (1988). DNA:DNA reassociation analysis of Aeromonas salmonicida. J Gen Microbiol 134, 307-315.
4. Belland, R. J. & Trust, T. J. (1989). Aeromonas salmonicida plasmids: plasmid-directed synthesis of proteins in vitro and in Escherichia coli minicells. J Gen Microbiol 135, 513-524.
5. Boyd, E. F., Hiney. M. P., Peden, J. F., Smith, P. R. & Caugant, D. A. (1994). Assessment of genetic diversity among Aeromonas salmonicida isolates by multilocus enzyme electrophoresis. J Fish Dis 17, 97-98.
6. Casjens, S. & Huang, W. M. (1993). Linear chromosomal physical and genetic map of Borrelia burgdorferi, the lyme disease agent. Mol Microbiol 8, 967-980.
7. Chu, S. & Trust, T. J. (1993). An Aeromonas salmonicida gene which influences A-protein expression in Escherichia coli encodes a protein containing an ATP-binding cassette and maps beside the surface array protein gene. J Bacteriol 175, 3105-3114.
8. Chu, S., Cavaignac, S., Feutrier, J., Phipps, B. M., Kostrzynska, M., Kay, W. W. & Trust, T. J. (1991). Structure of the tetragonal surface virulence array protein and gene of Aeromonas salmonicida. J Biol Chem 266, 15258-15265.
9. Cole, S. T. & Saint Girons, I. (1994). Bacterial genomics. FEMS Microbiol Rev 14, 139-160.
10. Dodsworth, S. J., Bennet, A. J. & Coleman, G. (1993). Molecular cloning and nucleotide sequence analysis of the maltose inducible porin gene of Aeromonas salmonicida. FEMS Microbiol Lett 112, 191-198.
11. Fonstein, M., Zheng, S. & Haselkorn, R. (1992). Physical map of the genome of Rhodobacter capsulatus SB 1003. J Bacteriol 174, 4070-4077.
12. Gauthier, A., Tunnel, M. & Lemieux, C. (1991). A group I intron in the chloroplast large subunit rRNA gene of Chlamydomonas eugametos encodes a double-strand endonuclease that cleaves the homing site of this intron. Curr Genet 19, 43-47.
13. Gustafson, C. E., Kaul, S. & Ishiguro, E. E. (1993). Identification of the Escherichia coli lytB gene, which is involved in penicillin tolerance and control of the stringent response. J Bacteriol 175, 1203-1205.
14. Gustafson, C. E., Chu, S. & Trust, T. J. (1994). Mutagenesis of the paracrystalline surface protein array of Aeromonas salmonicida by endogenous insertion elements. J Mol Biol 237, 452-463.
15. Hanahan, D. (1983). Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166, 557-580.
16. Innis, M. A., Tokunaga, M., Williams, M. E., Loranger, J. M., Chang, S.-Y., Chang, S. & Wu, H. C. (1984). Nucleotide sequence of the Escherichia coli prolipoprotein signal peptidase (lsp) gene. Proc Natl Acad Sci USA 81, 3708-3712.
17. Karlyshev, A. V. & Mclntyre, S. (1995). Cloning and study of the genetic organization of the exe cluster of Aeromonas salmonicida. Gene 158, 77-82.
18. Lin, Y.-S., Kieser, H. M., Hopwood, D. A. & Chen, C. W. (1993). The chromosomal DNA of Streptomyces lividans 66 is linear. Mol Microbiol 10, 923-933.
19. Liu, S.-L, Hassel, A. & Sanderson, K. E. (1993a). The XbaI-BlnI-CeuI genomic cleavage map of Salmonella enteritidis shows an inversion relative to Salmonella typhimurium LT2. Mol Microbiol 9, 655-664.
20. Liu, S.-L, Hessel, A. & Sanderson, K. E. (1993b). Genomic mapping with I-CeuI, an intron-encoded endonuclease specific for genes for ribosomal RNA, in Salmonella spp., Escherichia coli and other bacteria. Proc Natl Acad Sci USA 90, 6874-6878.
21. Liu, S.-L., Hessel, A. & Sanderson, K. E. (1993c). The XbaI-BlnI-CeuI genomic cleavage map of Salmonella typhimurium LT2 determined by double digestion, end labeling and pulsed field gel electrophoresis. J Bacteriol 175, 4104-4120.
22. Martinez-Murcia, A. J., Benlloch, S. & Collins, M. D. (1992). Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations, Int J Syst Bacteriol 42, 412-421.
23. Nerland, A. H. (1996). The nucleotide sequence of the gene encoding GCAT from Aeromonas salmonicida ssp. salmonicida. J Fish Dis 19, 145-150.
24. Nielson, B., Olsen, J. E. & Larson, J. L. (1993). Plasmid profiling as an epidemiological marker within Aeromonas salmonicida. Dis Aquat Org 15, 129-135.
25. Noonan, B. & Trust, T. J. (1995a). Molecular analysis of an A-protein secretion mutant of Aeromonas salmonicida reveals a surface layer-specific protein secretion pathway. J Mol Biol 248, 316-327.
26. Noonan, B. & Trust, T. J. (1995b). The molecular biology of Aeromonas salmonicida. Annu Rev Fish Dis 5, 95-111.
27. Noonan, B. & Trust, T. J. (1996). An Aeromonas salmonicida gene required for the establishment of infection in rainbow trout (Oncorhynchus mykiss). Gene 175, 127-131.
28. O'Toole, P. W., Kostrzynska, M. & Trust T. J. (1994). Non-motile mutants of Helicobacter pylori and Helicobacter mustelae defective in flagellar hook production. Mol Microbiol 14, 691-703.
29. Schwartz, D. C., Saffran, W., Welsh, J., Haas, R., Goldenberg, M. & Cantor, C. R. (1983). New techniques for purifying large DNAs and studying their properties and packaging. Cold Spring Harbor Symp Quant Biol 37, 189-195.
30. Smith, C. L., Econome, J. G., Schutt, A., Klco, S. & Cantor, C. R. (1987). A physical map of the Escherichia coli K12 genome. Science 236, 1448-1453.
31. Smith, C. L., Klco, S. R. & Cantor, C. R. (1988). Pulsed-field gel electrophoresis and the technology of large DNA molecules. In Genome Analysis: a Practical Approach, pp. 41-72. Edited by K. E. Davies. Oxford: IRL Press.
32. Sneath, P. H. A. (1993). Evidence from Aeromonas for genetic crossing-over in ribosomal sequences. Int J Syst Bacteriol 43, 626-629.
33. Suwanto, A. & Kaplan, S. (1989). Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: genome size, fragment identification and gene localization. J Bacteriol 171, 5840-5849.
34. Toranzo, A. E., Barja, J. L., Colwell, R. R. & Hetrick, F. M. (1983). Characterization of plasmids in bacterial fish pathogens. Infect Immun 39, 184-192.
35. Tsao, S. G. S., Brunk, C. F. & Perlman, R. E. (1983). Hybridization of nucleic acids directly in agarose gels. Anal Biochem 131, 365-372.
36. Umelo, E. & Trust, T. J. (1997). Identification and molecular characterization of two tandemly located flagellin genes from Aeromonas salmonicida A449. J Bacteriol 179, 5292-5299.
37. Umelo, E., Noonan, B. & Trust, T. J. (1996). Cloning, characterization and expression of the recA gene of Aeromonas salmonicida. Gene 175, 133-136.
38. Vaughan, L. M., Smith, P. R. & Foster, T. J. (1993). An aromatic-dependent mutant of the fish pathogen Aeromonas salmonicida is attenuated in fish and is effective as a live vaccine against the salmonid disease furunculosis. Infect Immun 61, 2172-2181.
39. Whitby, P. W., Landon, M. & Coleman, G. (1992). The cloning and nucleotide sequence of the serine protease gene (aspA) of Aeromonas salmonicida spp. salmonicida. FEMS Microbiol Lett 99, 65-72.
40. Wilcox, M. H., Cook, A. M., Thickett, K. J., Eley, A. & Spencer, R. C. (1992). Phenotypic methods for speciating clinical Aeromonas isolates. J Clin Pathol 45, 1079-1083.