메뉴 건너뛰기




Volumn 15, Issue 1, 2015, Pages

Dynamics of bacterial insertion sequences: Can transposition bursts help the elements persist? Theories and models

Author keywords

Adaptation; Bacterial evolution; Mobile DNA; Regulatory mechanism; Simulation model; Stress response; Transposable elements; Transposition burst

Indexed keywords

ADAPTATION; BACTERIUM; DNA; ENVIRONMENTAL STRESS; GENETIC VARIATION; GENOME; MUTATION; NUMERICAL MODEL;

EID: 84953871307     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-015-0560-5     Document Type: Article
Times cited : (29)

References (71)
  • 1
    • 0000257294 scopus 로고    scopus 로고
    • Mobile DNA In: Craig NL, Craigie R, Gellert M, Lambowitz AM, editors. Washington: ASM press
    • Chandler M, Mahillon J. Mobile DNA In: Craig NL, Craigie R, Gellert M, Lambowitz AM, editors. Washington: ASM press: 2002. p. 305-66.
    • (2002) , pp. 305-366
    • Chandler, M.1    Mahillon, J.2
  • 2
    • 33748876971 scopus 로고    scopus 로고
    • Insertion sequences in prokaryotic genomes
    • 16935554 1:CAS:528:DC%2BD28XpvFSisLg%3D doi:10.1016/j.mib.2006.08.005. Antimicrobials/Genomics
    • Siguier P, Filée J, Chandler M. Insertion sequences in prokaryotic genomes. Curr Opin Microbiol. 2006; 9(5):526-31. doi: http://dx.doi.org/10.1016/j.mib.2006.08.005. Antimicrobials/Genomics.
    • (2006) Curr Opin Microbiol , vol.9 , Issue.5 , pp. 526-531
    • Siguier, P.1    Filée, J.2    Chandler, M.3
  • 3
    • 0019754811 scopus 로고
    • Transposable elements in prokaryotes
    • 6279020 1:CAS:528:DyaL38Xks1OqsA%3D%3D
    • Kleckner N. Transposable elements in prokaryotes. Annu Rev Genet. 1981; 15:341-404.
    • (1981) Annu Rev Genet , vol.15 , pp. 341-404
    • Kleckner, N.1
  • 4
    • 0028697478 scopus 로고
    • Transposable elements and adaptation of host bacteria
    • 7813917 1:CAS:528:DyaK2MXislOmsL0%3D 10.1007/BF01435235
    • Blot M. Transposable elements and adaptation of host bacteria. Genetica. 1994; 93:5-12. 10.1007/BF01435235.
    • (1994) Genetica , vol.93 , pp. 5-12
    • Blot, M.1
  • 5
    • 0031716699 scopus 로고    scopus 로고
    • Insertion sequences
    • 9729608 1:CAS:528:DyaK1cXmtFOju78%3D 98933
    • Mahillon J, Chandler M. Insertion sequences. Microbiol Mol Biol Rev. 1998; 62(3):725-74.
    • (1998) Microbiol Mol Biol Rev , vol.62 , Issue.3 , pp. 725-774
    • Mahillon, J.1    Chandler, M.2
  • 6
    • 0022004371 scopus 로고
    • Evolution of transposable elements: An IS10 insertion increases fitness in Escherichia coli
    • 2835575 1:CAS:528:DyaL2MXlslejtb4%3D
    • Chao L, McBroom SM. Evolution of transposable elements: an IS10 insertion increases fitness in Escherichia coli. Mol Biol Evol. 1985; 2(5):359-69.
    • (1985) Mol Biol Evol , vol.2 , Issue.5 , pp. 359-369
    • Chao, L.1    McBroom, S.M.2
  • 7
    • 0008983173 scopus 로고    scopus 로고
    • Distribution of fitness effects caused by random insertion mutations in Escherichia coli
    • 9720287 doi:10.1023/A:1017031008316
    • Elena SF, Ekunwe L, Hajela N, Oden SA, Lenski RE. Distribution of fitness effects caused by random insertion mutations in Escherichia coli. Genetica. 1998; 102-103(0):349-58. doi: http://dx.doi.org/10.1023/A:1017031008316.
    • (1998) Genetica , vol.102-103 , pp. 349-358
    • Elena, S.F.1    Ekunwe, L.2    Hajela, N.3    Oden, S.A.4    Lenski, R.E.5
  • 8
    • 0027012820 scopus 로고
    • Evolutionary dynamics of transposable elements in prokaryotes and eukaryotes
    • 1334911 1:STN:280:DyaK3s7gs1Ciug%3D%3D
    • Hickey DA. Evolutionary dynamics of transposable elements in prokaryotes and eukaryotes. Genetica. 1992; 86:269-74.
    • (1992) Genetica , vol.86 , pp. 269-274
    • Hickey, D.A.1
  • 9
    • 34047240364 scopus 로고    scopus 로고
    • Causes of insertion sequences abundance in prokaryotic genomes
    • 17251179 1:CAS:528:DC%2BD2sXkslGrs7k%3D doi:10.1093/molbev/msm014
    • Touchon M, Rocha EPC. Causes of insertion sequences abundance in prokaryotic genomes. Mol Biol Evol. 2007; 24(4):969-81. doi: http://dx.doi.org/10.1093/molbev/msm014.
    • (2007) Mol Biol Evol , vol.24 , Issue.4 , pp. 969-981
    • Touchon, M.1    Rocha, E.P.C.2
  • 10
    • 57449109520 scopus 로고    scopus 로고
    • Transposable elements as genomic diseases
    • 19081928 1:CAS:528:DC%2BD1cXhsVOnurzP
    • Wagner A. Transposable elements as genomic diseases. Mol BioSyst. 2009; 5:32-5.
    • (2009) Mol BioSyst , vol.5 , pp. 32-35
    • Wagner, A.1
  • 11
    • 0018857680 scopus 로고
    • Selfish DNA: The ultimate parasite
    • 7366731 1:CAS:528:DyaL3cXktl2muro%3D
    • Orgel LE, Crick FHC. Selfish DNA: the ultimate parasite. Nature. 1980; 284:604-7.
    • (1980) Nature , vol.284 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.C.2
  • 12
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • 6245369 1:CAS:528:DyaL3cXktl2mur0%3D
    • Doolittle WF, Sapienza C. Selfish genes, the phenotype paradigm and genome evolution. Nature. 1980; 284(5757):601-3.
    • (1980) Nature , vol.284 , Issue.5757 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 13
    • 63149108674 scopus 로고    scopus 로고
    • The role of horizontal gene transfer in the evolution of selected foodborne bacterial pathogens
    • 18420329 1:CAS:528:DC%2BD1MXktF2ku78%3D doi:10.1016/j.fct.2008.02.006
    • Kelly BG, Vespermann A, Bolton DJ. The role of horizontal gene transfer in the evolution of selected foodborne bacterial pathogens. Food Chem Toxicol. 2009; 47(5):951-68. doi: http://dx.doi.org/10.1016/j.fct.2008.02.006.
    • (2009) Food Chem Toxicol , vol.47 , Issue.5 , pp. 951-968
    • Kelly, B.G.1    Vespermann, A.2    Bolton, D.J.3
  • 14
    • 33644899969 scopus 로고    scopus 로고
    • Periodic extinctions of transposable elements in bacterial lineages: Evidence from intragenomic variation in multiple genomes
    • 16373392 1:CAS:528:DC%2BD28XjtFCmsb0%3D
    • Wagner A. Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes. Mol Biol Evol. 2006; 23(4):723-33.
    • (2006) Mol Biol Evol , vol.23 , Issue.4 , pp. 723-733
    • Wagner, A.1
  • 15
    • 70449709427 scopus 로고    scopus 로고
    • Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia
    • 19821988 2770080 doi:10.1186/1471-2164-10-468
    • Bickhart DM, Gogarten JP, Lapierre P, Tisa LS, Normand P, Benson DR. Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia. BMC Genomics. 2009; 10(1):468. doi: http://dx.doi.org/10.1186/1471-2164-10-468.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 468
    • Bickhart, D.M.1    Gogarten, J.P.2    Lapierre, P.3    Tisa, L.S.4    Normand, P.5    Benson, D.R.6
  • 16
    • 0012461290 scopus 로고
    • The population biology of bacterial transposons: A priori conditions for maintenance as parasitic DNA
    • Condit R, Stewart FM, Levin BR. The population biology of bacterial transposons: a priori conditions for maintenance as parasitic DNA. Amer Nat. 1988; 132(1):129-47.
    • (1988) Amer Nat , vol.132 , Issue.1 , pp. 129-147
    • Condit, R.1    Stewart, F.M.2    Levin, B.R.3
  • 17
    • 77958511671 scopus 로고    scopus 로고
    • The early phase of a bacterial insertion sequence infection
    • 20816882 doi:10.1016/j.tpb.2010.08.003
    • Bichsel M, Barbour AD, Wagner A. The early phase of a bacterial insertion sequence infection. Theor Popul Biol. 2010; 78(4):278-88. doi: http://dx.doi.org/10.1016/j.tpb.2010.08.003.
    • (2010) Theor Popul Biol , vol.78 , Issue.4 , pp. 278-288
    • Bichsel, M.1    Barbour, A.D.2    Wagner, A.3
  • 18
    • 84871947032 scopus 로고    scopus 로고
    • Estimating the fitness effect of an insertion sequence
    • 22252506 doi:10.1007/s00285-012-0504-2
    • Bichsel M, Barbour AD, Wagner A. Estimating the fitness effect of an insertion sequence. J Math Biol. 2013; 66(1-2):95-114. doi: http://dx.doi.org/10.1007/s00285-012-0504-2.
    • (2013) J Math Biol , vol.66 , Issue.1-2 , pp. 95-114
    • Bichsel, M.1    Barbour, A.D.2    Wagner, A.3
  • 19
    • 24644515295 scopus 로고    scopus 로고
    • Models of the population genetics of transposable elements
    • 16174335 1:CAS:528:DC%2BD2MXnsl2lsLs%3D doi:10.1017/S0016672305007585
    • Le Rouzic A, Deceliere G. Models of the population genetics of transposable elements. Genet Res. 2005; 85:171-81. doi: http://dx.doi.org/10.1017/S0016672305007585.
    • (2005) Genet Res , vol.85 , pp. 171-181
    • Le Rouzic, A.1    Deceliere, G.2
  • 20
    • 34548256898 scopus 로고    scopus 로고
    • The role of IS6110 in the evolution of Mycobacterium tuberculosis
    • 17627889 1:CAS:528:DC%2BD2sXhtF2rsLvE doi:10.1016/j.tube.2007.05.010
    • McEvoy CRE, Falmer AA, Gey van Pittius NC, Victor TC, van Helden PD, Warren RM. The role of IS6110 in the evolution of Mycobacterium tuberculosis. Tuberculosis. 2007; 87(5):393-404. doi: http://dx.doi.org/10.1016/j.tube.2007.05.010.
    • (2007) Tuberculosis , vol.87 , Issue.5 , pp. 393-404
    • McEvoy, C.R.E.1    Falmer, A.A.2    Gey Van Pittius, N.C.3    Victor, T.C.4    Van Helden, P.D.5    Warren, R.M.6
  • 21
    • 79954415222 scopus 로고    scopus 로고
    • Insertion sequence elements in Cupriavidus metallidurans CH34: Distribution and role in adaptation
    • 21185859 1:CAS:528:DC%2BC3MXkslCht78%3D
    • Mijnendonckx K, Provoost A, Monsieurs P, Leys N, Mergeay M, Mahillon J, et al. Insertion sequence elements in Cupriavidus metallidurans CH34: distribution and role in adaptation. Plasmid. 2011; 65:193-203.
    • (2011) Plasmid , vol.65 , pp. 193-203
    • Mijnendonckx, K.1    Provoost, A.2    Monsieurs, P.3    Leys, N.4    Mergeay, M.5    Mahillon, J.6
  • 22
    • 84864386053 scopus 로고    scopus 로고
    • IS30 elements are mediators of genetic diversity in Oenococcus oeni
    • 22809637 1:CAS:528:DC%2BC38XhtV2iu7fL doi:10.1016/j.ijfoodmicro.2012.06.009
    • El Gharniti F, Dols-Lafargue M, Bon E, Claisse O, Miot-Sertier C, Lonvaud A, et al. IS30 elements are mediators of genetic diversity in Oenococcus oeni. Int J Food Microbiol. 2012; 158(1):14-22. doi: http://dx.doi.org/10.1016/j.ijfoodmicro.2012.06.009.
    • (2012) Int J Food Microbiol , vol.158 , Issue.1 , pp. 14-22
    • El Gharniti, F.1    Dols-Lafargue, M.2    Bon, E.3    Claisse, O.4    Miot-Sertier, C.5    Lonvaud, A.6
  • 23
    • 84875231446 scopus 로고    scopus 로고
    • The impact of transposable elements in environmental adaptation
    • 23293987 1:CAS:528:DC%2BC3sXktFSrsb4%3D doi:10.1111/mec.12170
    • Casacuberta E, Gonzalez J. The impact of transposable elements in environmental adaptation. Mol Ecol. 2013; 22(6):1503-1517. doi: http://dx.doi.org/10.1111/mec.12170.
    • (2013) Mol Ecol , vol.22 , Issue.6 , pp. 1503-1517
    • Casacuberta, E.1    Gonzalez, J.2
  • 24
    • 0020625499 scopus 로고
    • Transposable elements as mutator genes in evolution
    • 6304533 1:CAS:528:DyaL3sXks1Giur8%3D doi:10.1038/303633a0
    • Chao L, Vargas C, Spear BB, Cox EC. Transposable elements as mutator genes in evolution. Nature. 1983; 303:633-5. doi: http://dx.doi.org/10.1038/303633a0.
    • (1983) Nature , vol.303 , pp. 633-635
    • Chao, L.1    Vargas, C.2    Spear, B.B.3    Cox, E.C.4
  • 25
    • 0036593396 scopus 로고    scopus 로고
    • Transposable elements and fitness of bacteria
    • 12167371 doi:10.1006/tpbi.2002.1603
    • Martiel J, Blot M. Transposable elements and fitness of bacteria. Theor Popul Biol. 2002; 61(4):509-18. doi: http://dx.doi.org/10.1006/tpbi.2002.1603.
    • (2002) Theor Popul Biol , vol.61 , Issue.4 , pp. 509-518
    • Martiel, J.1    Blot, M.2
  • 26
    • 2942632968 scopus 로고    scopus 로고
    • Dynamics of insertion sequence elements during experimental evolution of bacteria
    • 15207863 1:CAS:528:DC%2BD2cXltVCqtLk%3D doi:doi:10.1016/j.resmic.2003.12.008. Genome plasticity and the evolution of microbial genomes
    • Schneider D, Lenski RE. Dynamics of insertion sequence elements during experimental evolution of bacteria. Res. Microbiol. 2004; 155(5):319-27. doi: http://dx.doi.org/10.1016/j.resmic.2003.12.008. Genome plasticity and the evolution of microbial genomes.
    • (2004) Res. Microbiol , vol.155 , Issue.5 , pp. 319-327
    • Schneider, D.1    Lenski, R.E.2
  • 27
    • 79958192448 scopus 로고    scopus 로고
    • Insertion sequence-driven evolution of Escherichia coli in chemostats
    • 21399911 doi:10.1007/s00239-011-9439-2
    • Gaffé J, McKenzie C, Maharjan RP, Coursange E, Ferenci T, Schneider D. Insertion sequence-driven evolution of Escherichia coli in chemostats. J Mol Evol. 2011; 72(4):398-412. doi: http://dx.doi.org/10.1007/s00239-011-9439-2.
    • (2011) J Mol Evol , vol.72 , Issue.4 , pp. 398-412
    • Gaffé, J.1    McKenzie, C.2    Maharjan, R.P.3    Coursange, E.4    Ferenci, T.5    Schneider, D.6
  • 28
    • 0033289711 scopus 로고    scopus 로고
    • Transposable elements as activators of cryptic genes in E. Coli
    • 10952211 1:CAS:528:DC%2BD3cXmtVChsr0%3D doi:10.1023/A:1003936706129
    • Hall BG. Transposable elements as activators of cryptic genes in E. coli. Genetica. 1999; 107(1-3):181-7. doi: http://dx.doi.org/10.1023/A:1003936706129.
    • (1999) Genetica , vol.107 , Issue.1-3 , pp. 181-187
    • Hall, B.G.1
  • 29
    • 0025940311 scopus 로고
    • Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences
    • 1656436 1:CAS:528:DyaK3sXhs1Wqsr0%3D 52498
    • Nakatsu C, Ng J, Singh R, Straus N, Wyndham C. Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences. Proc Natl Acad Sci USA. 1991; 88(19):8312-316.
    • (1991) Proc Natl Acad Sci USA , vol.88 , Issue.19 , pp. 8312-8316
    • Nakatsu, C.1    Ng, J.2    Singh, R.3    Straus, N.4    Wyndham, C.5
  • 30
    • 0042423715 scopus 로고    scopus 로고
    • C T X-M β-lactamase gene
    • 12936998 1:CAS:528:DC%2BD3sXntFegtrw%3D 182628 doi:10.1128/AAC.47.9.2938-2945.2003
    • C T X-M β-lactamase gene. Antimicrob Agents Chemother. 2003; 47(9):2938-945. doi: http://dx.doi.org/10.1128/AAC.47.9.2938-2945.2003.
    • (2003) Antimicrob Agents Chemother , vol.47 , Issue.9 , pp. 2938-2945
    • Poirel, L.1    Decousser, J.W.2    Nordmann, P.3
  • 31
    • 0347123168 scopus 로고    scopus 로고
    • Detection of an IS21 insertion sequence in the mexR gene of Pseudomonas aeruginosa increasing β-lactam resistance
    • 14734177 1:CAS:528:DC%2BD2cXltVyktg%3D%3D doi:10.1016/S0378-1097(03)00882-6
    • Boutoille D, Corvec S, Caroff N, Giraudeau C, Espaze E, Caillon J, et al. Detection of an IS21 insertion sequence in the mexR gene of Pseudomonas aeruginosa increasing β-lactam resistance. FEMS Microbiol Lett. 2004; 230(1):143-6. doi: http://dx.doi.org/10.1016/S0378-1097(03)00882-6.
    • (2004) FEMS Microbiol Lett , vol.230 , Issue.1 , pp. 143-146
    • Boutoille, D.1    Corvec, S.2    Caroff, N.3    Giraudeau, C.4    Espaze, E.5    Caillon, J.6
  • 32
    • 47249129539 scopus 로고    scopus 로고
    • A family of insertion sequences that impacts integrons by specific targeting of gene cassette recombination sites, the IS1111-attC group
    • 18487340 1:CAS:528:DC%2BD1cXosFWktLY%3D 2447020 doi:10.1128/JB.00229-08
    • Tetu SG, Holmes AJ. A family of insertion sequences that impacts integrons by specific targeting of gene cassette recombination sites, the IS1111-attC group. J Bacteriol. 2008; 190(14):4959-970. doi: http://dx.doi.org/10.1128/JB.00229-08.
    • (2008) J Bacteriol , vol.190 , Issue.14 , pp. 4959-4970
    • Tetu, S.G.1    Holmes, A.J.2
  • 33
    • 79951952817 scopus 로고    scopus 로고
    • Influence of ciprofloxacin and vancomycin on mutation rate and transposition of IS256 in Staphylococcus aureus
    • 1:CAS:528:DC%2BC3MXisFKjurY%3D doi:10.1016/j.ijmm.2010.08.021
    • Nagel M, Reuter T, Jansen A, Szekat C, Bierbaum G. Influence of ciprofloxacin and vancomycin on mutation rate and transposition of IS256 in Staphylococcus aureus. Internatl J Medical Microbiol. 2011; 301(3):229-36. doi: http://dx.doi.org/10.1016/j.ijmm.2010.08.021.
    • (2011) Internatl J Medical Microbiol , vol.301 , Issue.3 , pp. 229-236
    • Nagel, M.1    Reuter, T.2    Jansen, A.3    Szekat, C.4    Bierbaum, G.5
  • 34
    • 84860525094 scopus 로고    scopus 로고
    • Insertion sequence IS256 in canine pyoderma isolates of Staphylococcus pseudintermedius associated with antibiotic resistance
    • 22261238 1:CAS:528:DC%2BC38XmvFKlt7s%3D
    • Casagrande Proietti P, Bietta A, Coletti M, Marenzoni ML, Scorza AV, Passamonti F. Insertion sequence IS256 in canine pyoderma isolates of Staphylococcus pseudintermedius associated with antibiotic resistance. Vet Microbiol. 2012; 157:376-82.
    • (2012) Vet Microbiol , vol.157 , pp. 376-382
    • Casagrande Proietti, P.1    Bietta, A.2    Coletti, M.3    Marenzoni, M.L.4    Scorza, A.V.5    Passamonti, F.6
  • 35
    • 0037227365 scopus 로고    scopus 로고
    • Transiently beneficial insertions could maintain mobile DNA sequences in variable environments
    • 12519903 1:CAS:528:DC%2BD3sXktlOkuw%3D%3D doi:10.1093/molbev/msg001
    • Edwards RJ, Brookfield JFY. Transiently beneficial insertions could maintain mobile DNA sequences in variable environments. Mol Biol Evol. 2003; 20(1):30-7. doi: http://dx.doi.org/10.1093/molbev/msg001.
    • (2003) Mol Biol Evol , vol.20 , Issue.1 , pp. 30-37
    • Edwards, R.J.1    Brookfield, J.F.Y.2
  • 36
    • 33749069274 scopus 로고    scopus 로고
    • The interaction between mobile DNAs and their hosts in a fluctuating environment
    • 16859716 1:CAS:528:DC%2BD28XhtVajsLbI doi:10.1016/j.jtbi.2006.05.029
    • McGraw JE, Brookfield JFY. The interaction between mobile DNAs and their hosts in a fluctuating environment. J Theor Biol. 2006; 243:13-23. doi: http://dx.doi.org/10.1016/j.jtbi.2006.05.029.
    • (2006) J Theor Biol , vol.243 , pp. 13-23
    • McGraw, J.E.1    Brookfield, J.F.Y.2
  • 37
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • 14631042 1:CAS:528:DC%2BD3sXptVGjsrs%3D doi:10.1126/science.1089370
    • Lynch M, Conery JS. The origins of genome complexity. Science. 2003; 302(5649):1401-1404. doi: http://dx.doi.org/10.1126/science.1089370.
    • (2003) Science , vol.302 , Issue.5649 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 38
    • 84903384826 scopus 로고    scopus 로고
    • Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes
    • doi:10.1371/journal.pcbi.1003680
    • Iranzo J, Gómez MJ, López de Saro FJ, Manrubia S. Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes. PLoS Comput Biol. 2014; 10(6):1003680. doi: http://dx.doi.org/10.1371/journal.pcbi.1003680.
    • (2014) PLoS Comput Biol , vol.10 , Issue.6 , pp. 1003680
    • Iranzo, J.1    Gómez, M.J.2    López De Saro, F.J.3    Manrubia, S.4
  • 39
    • 37649005250 scopus 로고    scopus 로고
    • Long-term evolution of transposable elements
    • 18040048 1:CAS:528:DC%2BD1cXitlWjtw%3D%3D 2148297 doi:10.1073/pnas.0705238104
    • Le Rouzic A, Boutin TS, Capy P. Long-term evolution of transposable elements. Proc Natl Acad Sci USA. 2007; 104(49):19375-19380. doi: http://dx.doi.org/10.1073/pnas.0705238104.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.49 , pp. 19375-19380
    • Le Rouzic, A.1    Boutin, T.S.2    Capy, P.3
  • 40
    • 77958557453 scopus 로고    scopus 로고
    • Mobile DNA can drive lineage extinction in prokaryotic populations
    • 20860700 1:STN:280:DC%2BC3cbhtFKjtg%3D%3D doi:10.1111/j.1420-9101.2010.02106.x
    • Rankin DJ, Bichsel M, Wagner A. Mobile DNA can drive lineage extinction in prokaryotic populations. J Evol Biol. 2010; 23(11):2422-431. doi: http://dx.doi.org/10.1111/j.1420-9101.2010.02106.x.
    • (2010) J Evol Biol , vol.23 , Issue.11 , pp. 2422-2431
    • Rankin, D.J.1    Bichsel, M.2    Wagner, A.3
  • 41
    • 33750465172 scopus 로고    scopus 로고
    • The fate of transposable elements in asexual populations
    • 16888330 1:CAS:528:DC%2BD28Xht12mur%2FO 1602064 doi:10.1534/genetics.106.060434
    • Dolgin ES, Charlesworth B. The fate of transposable elements in asexual populations. Genetics. 2006; 174(2):817-27. doi: http://dx.doi.org/10.1534/genetics.106.060434.
    • (2006) Genetics , vol.174 , Issue.2 , pp. 817-827
    • Dolgin, E.S.1    Charlesworth, B.2
  • 42
    • 13144255696 scopus 로고    scopus 로고
    • The ecology of the genome - Mobile DNA elements and their hosts
    • 15640810 1:CAS:528:DC%2BD2MXhtFyjsro%3D
    • Brookfield JFY. The ecology of the genome - mobile DNA elements and their hosts. Nat Rev Genet. 2005; 6(2):128-36.
    • (2005) Nat Rev Genet , vol.6 , Issue.2 , pp. 128-136
    • Brookfield, J.F.Y.1
  • 43
    • 33750396870 scopus 로고    scopus 로고
    • TESD: A transposable element dynamics simulation environment
    • 16928734 1:CAS:528:DC%2BD28XhtFKltr7F doi:10.1093/bioinformatics/btl454
    • Deceliere G, Letrillard Y, Charles S, Biémont C. TESD: a transposable element dynamics simulation environment. Bioinformatics. 2006; 22(21):2702-703. doi: http://dx.doi.org/10.1093/bioinformatics/btl454.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2702-2703
    • Deceliere, G.1    Letrillard, Y.2    Charles, S.3    Biémont, C.4
  • 44
    • 2942755693 scopus 로고    scopus 로고
    • Regulation of transposition in bacteria
    • 15207871 1:CAS:528:DC%2BD2cXltVCqtbs%3D doi:10.1016/j.resmic.2004.01.008
    • Nagy Z, Chandler M. Regulation of transposition in bacteria. Res Microbiol. 2004; 155:387-98. doi: http://dx.doi.org/10.1016/j.resmic.2004.01.008.
    • (2004) Res Microbiol , vol.155 , pp. 387-398
    • Nagy, Z.1    Chandler, M.2
  • 45
    • 35148899681 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • 17917873 1:CAS:528:DC%2BD2sXhtFWqsrnK 2747772 doi:10.1080/10409230701648494
    • Foster PL. Stress-induced mutagenesis in bacteria. Crit Rev Biochem Mol Biol. 2007; 42(5):373-97. doi: http://dx.doi.org/10.1080/10409230701648494.
    • (2007) Crit Rev Biochem Mol Biol , vol.42 , Issue.5 , pp. 373-397
    • Foster, P.L.1
  • 46
    • 79952706183 scopus 로고    scopus 로고
    • The struggle for life of the genome's selfish architects
    • 21414203 3072357 doi:10.1186/1745-6150-6-19
    • Hua-Van A, Le Rouzic A, Boutin TS, Filée J, Capy P. The struggle for life of the genome's selfish architects. Biol Direct. 2011; 6(1):19. doi: http://dx.doi.org/10.1186/1745-6150-6-19.
    • (2011) Biol Direct , vol.6 , Issue.1 , pp. 19
    • Hua-Van, A.1    Le Rouzic, A.2    Boutin, T.S.3    Filée, J.4    Capy, P.5
  • 47
    • 0025602887 scopus 로고
    • Transposition burst of the ISH27 insertion element family in Halobacterium halobium
    • 2175883 1:CAS:528:DyaK3MXlsFaitrk%3D 332751 doi:10.1093/nar/18.23.6921
    • Pfeifer F, Blaseio U. Transposition burst of the ISH27 insertion element family in Halobacterium halobium. Nucleic Acids Res. 1990; 18(23):6921-925. doi: http://dx.doi.org/10.1093/nar/18.23.6921.
    • (1990) Nucleic Acids Res , vol.18 , Issue.23 , pp. 6921-6925
    • Pfeifer, F.1    Blaseio, U.2
  • 48
    • 0031829602 scopus 로고    scopus 로고
    • UV light induces IS10 transposition in Escherichia coli
    • 9649512 1:CAS:528:DyaK1cXkvVSlu70%3D 1460249
    • Eichenbaum Z, Livneh Z. UV light induces IS10 transposition in Escherichia coli. Genetics. 1998; 149(3):1173-1181.
    • (1998) Genetics , vol.149 , Issue.3 , pp. 1173-1181
    • Eichenbaum, Z.1    Livneh, Z.2
  • 49
    • 0033800838 scopus 로고    scopus 로고
    • Stress and transposable elements: Co-evolution or useful parasites?
    • 11012710 1:CAS:528:DC%2BD3cXnsFChsbc%3D
    • Capy P, Gasperi G, Biémont C, Bazin C. Stress and transposable elements: co-evolution or useful parasites?. Heredity. 2000; 85(2):101-6.
    • (2000) Heredity , vol.85 , Issue.2 , pp. 101-106
    • Capy, P.1    Gasperi, G.2    Biémont, C.3    Bazin, C.4
  • 50
    • 10844250172 scopus 로고    scopus 로고
    • Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis
    • 15579676 1:CAS:528:DC%2BD2MXltVemtA%3D%3D 1448763 doi:10.1534/genetics.104.032136
    • de Visser JAGM, Akkermans ADL, Hoekstra RF, de Vos WM. Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis. Genetics. 2004; 168:1145-1157. doi: http://dx.doi.org/10.1534/genetics.104.032136.
    • (2004) Genetics , vol.168 , pp. 1145-1157
    • De Visser, J.A.G.M.1    Akkermans, A.D.L.2    Hoekstra, R.F.3    De Vos, W.M.4
  • 51
    • 15544374910 scopus 로고    scopus 로고
    • The first steps of transposable elements invasion: Parasitic strategy vs, genetic drift
    • 15731520 1:CAS:528:DC%2BD2MXjtVOlsrY%3D 1449084 doi:10.1534/genetics.104.031211
    • Le Rouzic A, Capy P. The first steps of transposable elements invasion: parasitic strategy vs, genetic drift. Genetics. 2005; 169(2):1033-43. doi: http://dx.doi.org/10.1534/genetics.104.031211.
    • (2005) Genetics , vol.169 , Issue.2 , pp. 1033-1043
    • Le Rouzic, A.1    Capy, P.2
  • 52
    • 84887448976 scopus 로고    scopus 로고
    • Antibiotic-induced autoactivation of IS256 in Staphylococcus aureus
    • 24080654 1:CAS:528:DC%2BC3sXhvVCjur3K 3837861 doi:10.1128/AAC.01585-13
    • Schreiber F, Szekat C, Josten M, Sahl HG, Bierbaum G. Antibiotic-induced autoactivation of IS256 in Staphylococcus aureus. Antimicrob Agents Chemother. 2013; 57(12):6381-384. doi: http://dx.doi.org/10.1128/AAC.01585-13.
    • (2013) Antimicrob Agents Chemother , vol.57 , Issue.12 , pp. 6381-6384
    • Schreiber, F.1    Szekat, C.2    Josten, M.3    Sahl, H.G.4    Bierbaum, G.5
  • 53
    • 77955955965 scopus 로고    scopus 로고
    • The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli
    • 20400481 1:CAS:528:DC%2BC3cXhtVGrt7nN 2922620 doi:10.1093/molbev/msq101
    • Stoebel DM, Dorman CJ. The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli. Mol Biol Evol. 2010; 27(9):2105-112. doi: http://dx.doi.org/10.1093/molbev/msq101.
    • (2010) Mol Biol Evol , vol.27 , Issue.9 , pp. 2105-2112
    • Stoebel, D.M.1    Dorman, C.J.2
  • 54
    • 33645077635 scopus 로고    scopus 로고
    • Mutagenesis via IS transposition in Deinococcus radiodurans
    • 1:CAS:528:DC%2BD28Xhs1aqt7c%3D doi:10.1111/j.1365-2958.2005.04936.x
    • Mennecier S, Servant P, Coste G, Bailone A, Sommer S. Mutagenesis via IS transposition in Deinococcus radiodurans. Mol Microb. 2006; 59(1):317-25. doi: http://dx.doi.org/10.1111/j.1365-2958.2005.04936.x.
    • (2006) Mol Microb , vol.59 , Issue.1 , pp. 317-325
    • Mennecier, S.1    Servant, P.2    Coste, G.3    Bailone, A.4    Sommer, S.5
  • 55
    • 0034724444 scopus 로고    scopus 로고
    • The dynamics of repeated elements: Applications to the epidemiology of tuberculosis
    • 10716736 1:CAS:528:DC%2BD3cXitlWqtb8%3D 16274 doi:10.1073/pnas.97.7.3532
    • Tanaka MM, Small PM, Salamon H, Feldman MW. The dynamics of repeated elements: applications to the epidemiology of tuberculosis. Proc Natl Acad Sci USA. 2000; 97(7):3532-537. doi: http://dx.doi.org/10.1073/pnas.97.7.3532.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.7 , pp. 3532-3537
    • Tanaka, M.M.1    Small, P.M.2    Salamon, H.3    Feldman, M.W.4
  • 56
    • 12344315160 scopus 로고    scopus 로고
    • Deleterious transposable elements and the extinction of asexuals
    • 15612027 1:CAS:528:DC%2BD2MXptVCmsA%3D%3D doi:10.1002/bies.20159
    • Arkhipova I, Meselson M. Deleterious transposable elements and the extinction of asexuals. BioEssays. 2005; 27(1):76-85. doi: http://dx.doi.org/10.1002/bies.20159.
    • (2005) BioEssays , vol.27 , Issue.1 , pp. 76-85
    • Arkhipova, I.1    Meselson, M.2
  • 57
    • 0022600495 scopus 로고
    • The evolution of self-regulated transposition of transposable elements
    • 3000868 1:CAS:528:DyaL28XotlSltw%3D%3D 1202706
    • Charlesworth B, Langley CH. The evolution of self-regulated transposition of transposable elements. Genetics. 1986; 112(2):359-83.
    • (1986) Genetics , vol.112 , Issue.2 , pp. 359-383
    • Charlesworth, B.1    Langley, C.H.2
  • 58
    • 0028711866 scopus 로고
    • Drosophila P element: Transposition, regulation and evolution
    • 7813918 1:CAS:528:DyaK2MXislOmsLY%3D doi:10.1007/BF01435240
    • Coen D, Lemaitre B, Delattre M, Quesneville H, Ronsseray S, Simonelig M, et al. Drosophila P element: transposition, regulation and evolution. Genetica. 1994; 93:61-78. doi: http://dx.doi.org/10.1007/BF01435240.
    • (1994) Genetica , vol.93 , pp. 61-78
    • Coen, D.1    Lemaitre, B.2    Delattre, M.3    Quesneville, H.4    Ronsseray, S.5    Simonelig, M.6
  • 59
    • 0031467680 scopus 로고    scopus 로고
    • Transposable element-host interactions: Regulation of insertion and excision
    • Labrador M, Corces VG. Transposable element-host interactions: regulation of insertion and excision. Annu Rev Genet. 1997; 37:381-401.
    • (1997) Annu Rev Genet , vol.37 , pp. 381-401
    • Labrador, M.1    Corces, V.G.2
  • 60
    • 0035105221 scopus 로고    scopus 로고
    • Perspective: Transposable elements, parasitic DNA, and genome evolution
    • 11263730 1:CAS:528:DC%2BD3MXhvFKksLw%3D
    • Kidwell MG, Lisch DR. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution. 2001; 55(1):1-24.
    • (2001) Evolution , vol.55 , Issue.1 , pp. 1-24
    • Kidwell, M.G.1    Lisch, D.R.2
  • 61
    • 67650272723 scopus 로고    scopus 로고
    • Theoretical approaches to the dynamics of transposable elements in genomes, populations, and species
    • D.-H. Lankenau J.-N. Volff (eds) Springer Berlin
    • Le Rouzic A, Capy P. Theoretical approaches to the dynamics of transposable elements in genomes, populations, and species In: Lankenau D-H, Volff J-N, editors. Transposons and the Dynamic Genome. Genome Dynamics and Stability. Berlin: Springer: 2009. p. 1-19.
    • (2009) Transposons and the Dynamic Genome. Genome Dynamics and Stability
    • Le Rouzic, A.1    Capy, P.2
  • 62
    • 0023122287 scopus 로고
    • Distribution and abundance of insertion sequences among naturalss isolates of Escherichia coli
    • 3030884 1:CAS:528:DyaL2sXhtFCgu7k%3D 1203063
    • Sawyer SA, Dykhuizen DE, DuBose RF, Green L, Mutangadura-Mhlanga T, Wolczyk DF, et al. Distribution and abundance of insertion sequences among naturalss isolates of Escherichia coli. Genetics. 1987; 115(1):51-63.
    • (1987) Genetics , vol.115 , Issue.1 , pp. 51-63
    • Sawyer, S.A.1    Dykhuizen, D.E.2    DuBose, R.F.3    Green, L.4    Mutangadura-Mhlanga, T.5    Wolczyk, D.F.6
  • 64
    • 84955349191 scopus 로고
    • A mathematical theory of natural and artificial selection, part v: Selection and mutation
    • doi:10.1017/S0305004100015644
    • Haldane JBS. A mathematical theory of natural and artificial selection, part v: Selection and mutation. Math Proc Camb Philos Soc. 1927; 23:838-44. doi: http://dx.doi.org/10.1017/S0305004100015644.
    • (1927) Math Proc Camb Philos Soc , vol.23 , pp. 838-844
    • Haldane, J.B.S.1
  • 65
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • 14456043 1:STN:280:DyaF38%2FlslCmtg%3D%3D 1210364
    • Kimura M. On the probability of fixation of mutant genes in a population. Genetics. 1962; 47(6):713-9.
    • (1962) Genetics , vol.47 , Issue.6 , pp. 713-719
    • Kimura, M.1
  • 66
    • 34547396004 scopus 로고    scopus 로고
    • The frailty of adaptive hypotheses for the origins of organismal complexity
    • 17494740 1:CAS:528:DC%2BD2sXlvFCqu78%3D 1876435 doi:10.1073/pnas.0702207104
    • Lynch M. The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci. 2007; 104(Suppl 1):8597-604. doi: http://dx.doi.org/10.1073/pnas.0702207104.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 8597-8604
    • Lynch, M.1
  • 67
    • 0033288823 scopus 로고    scopus 로고
    • Sure facts, speculations, and open questions about the evolution of transposable element copy number
    • 10952206 1:CAS:528:DC%2BD3cXmtVCiu7Y%3D doi:10.1023/A:1003957323876
    • Nuzhdin S. Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica. 1999; 107(1):129-37. doi: http://dx.doi.org/10.1023/A:1003957323876.
    • (1999) Genetica , vol.107 , Issue.1 , pp. 129-137
    • Nuzhdin, S.1
  • 68
    • 25144499113 scopus 로고    scopus 로고
    • Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress
    • 16135227 1:CAS:528:DC%2BD2MXhtVKqsr3K doi:10.1111/j.1365-2958.2005.04794.x
    • Twiss E, Coros AM, Tavakoli NP, Derbyshire KM. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Mol Microbiol. 2005; 57(6):1593-607. doi: http://dx.doi.org/10.1111/j.1365-2958.2005.04794.x.
    • (2005) Mol Microbiol , vol.57 , Issue.6 , pp. 1593-1607
    • Twiss, E.1    Coros, A.M.2    Tavakoli, N.P.3    Derbyshire, K.M.4
  • 69
    • 2542478884 scopus 로고    scopus 로고
    • Evolutionary significance of stress-induced mutagenesis in bacteria
    • 15165604 1:CAS:528:DC%2BD2cXksVeltr8%3D doi:10.1016/j.tim.2004.04.002
    • Tenaillon O, Denamur E, Matic I. Evolutionary significance of stress-induced mutagenesis in bacteria. Trends Microbiol. 2004; 12(6):264-70. doi: http://dx.doi.org/10.1016/j.tim.2004.04.002.
    • (2004) Trends Microbiol , vol.12 , Issue.6 , pp. 264-270
    • Tenaillon, O.1    Denamur, E.2    Matic, I.3
  • 70
    • 0021032993 scopus 로고
    • Competition between high and low mutating strains of Escherichia coli
    • Chao L, Cox EC. Competition between high and low mutating strains of Escherichia coli. Evolution. 1983; 37(1):125-34.
    • (1983) Evolution , vol.37 , Issue.1 , pp. 125-134
    • Chao, L.1    Cox, E.C.2
  • 71
    • 60549105201 scopus 로고    scopus 로고
    • Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella
    • 19047403 1:CAS:528:DC%2BD1MXhs1Shs78%3D 2632050 doi:10.1128/IAI.01141-08
    • Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, et al. Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella. Infect Immun. 2009; 77(2):642-56. doi: http://dx.doi.org/10.1128/IAI.01141-08.
    • (2009) Infect Immun , vol.77 , Issue.2 , pp. 642-656
    • Beare, P.A.1    Unsworth, N.2    Andoh, M.3    Voth, D.E.4    Omsland, A.5    Gilk, S.D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.