TESD: A transposable element dynamics simulation environment

Bioinformatics

Volumn 22, Issue 21, 2006, Pages 2702-2703

  Deceliere, Grégory ^a   Letrillard, Yann ^a   Charles, Sandrine ^a   Biémont, Christian ^a  

^a UNIVERSITÉ LYON 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER SIMULATION; CONTROLLED STUDY; DEMOGRAPHY; DNA TRANSPOSITION; GENE INSERTION; GENETIC ANALYSIS; GENETIC RECOMBINATION; GENOME; GENOMICS; INTERNET; MATHEMATICAL MODEL; MIGRATION; MOLECULAR DYNAMICS; POPULATION DYNAMICS; POPULATION GENETICS; PRIORITY JOURNAL; TRANSPOSON; WEB BROWSER;

EID: 33750396870     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl454     Document Type: Article

References (17)

1. Badge,R.M. and Brookfield,J.F. (1997) The role of host factors in the population dynamics of selfish transposable elements. J. Theor. Biol., 187, 261-271.
2. Biémont,C. and Vieira,C. (2005) What transposable elements tell us about genome organisation and evolution? The case of Drosophila. Cytogenet. Genome Res., 110, 25-34.
3. Biémont,C. et al. (1987) Genome reshuffling of the copia element in a Drosophila melanogaster inbred line. Nature, 329, 742-744.
4. Biémont,C. et al. (1994) High rate of movement of one (mdg3) out of four transposable elements in a natural population of Drosophila melanogaster. C. R. Acad. Sci., 317, 283-286.
5. Biémont,C. et al. (2003) Invasion of natural populations by transposable elements in Drosophila simulans. Evolution, 57, 159-167.
6. Brookfield,J.F.Y. (2001) Population bottlenecks. Curr. Biol., 11, R1000.
7. Charlesworth,B. and Charlesworth,D. (1983) The population dynamics of transposable elements. Genet. Res., 42, 1-27.
8. Deceliere,G. et al. (2005) Influence of structured populations on the dynamics of genomic transposable elements. Genetics, 169, 467-474.
9. Kimura,M. and Weiss,G.H. (1994) The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49, 561-576.
10. Le Rouzic,A. and Capy,P. (2005) The first steps of transposable elements invasion: Parasitic strategy vs. Genetic drift. Genetics, 169, 1033-1045.
11. Le Rouzic,A. and Deceliere,G. (2005) Models of the population genetics of transposable elements. Genet. Res., 85, 171-181.
12. Nuzhdin,S.V. et al. (1996) Positive association between copia transposition rate and copy number in Drosophila melanogaster. Proc. Biol. Sci., 263, 823-831.
13. Nuzhdin,S.V. et al. (1997) Accumulation of transposable elements in laboratory lines of Drosophila melanogaster. Genetica, 100, 167-175.
14. Quesneville,H. and Anxolabéhère,D. (1998) Dynamics of transposable elements in meta-populations: A model of P elements invasion in Drosophila. Theor. Popul. Biol., 54, 175-193.
15. Tsitrone,A. et al. (1999) Dynamics of transposable elements under the selection model. Genet. Res., 74, 159-164.
16. Vieira,C. and Biémont,C. (1996) Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans. J. Mol. Evol., 42, 443-451.
17. Vieira,C. et al. (1998) A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans. Proc. Biol. Sci., 265, 1161-1165.