Mutagenesis via IS transposition in Deinococcus radiodurans

Molecular Microbiology

Volumn 59, Issue 1, 2006, Pages 317-325

  Mennecier, Samuel ^a   Servant, Pascale ^a   Coste, Geneviève ^a   Bailone, Adriana ^a   Sommer, Suzanne ^a  

^a UNIVERSITÉ PARIS SACLAY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ANTIBIOTIC RESISTANCE; ARTICLE; DEINOCOCCUS RADIODURANS; DNA DAMAGE; DNA TRANSPOSITION; GAMMA IRRADIATION; GENE IDENTIFICATION; GENE INSERTION; GENE INSERTION SEQUENCE; GENE MUTATION; GENETIC VARIABILITY; MISMATCH REPAIR; MOLECULAR EVOLUTION; MUTAGENESIS; NONHUMAN; POINT MUTATION; PRIORITY JOURNAL; RADIATION EXPOSURE; ULTRAVIOLET IRRADIATION; UPREGULATION;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 33645077635     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2005.04936.x     Document Type: Article

References (41)

1. Baranov PV. Hammer AW. Zhou J. Gesteland RF. Atkins JF. 2005 Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression Genome Biol 6 R25
2. Battista JR. 1997 Against all odds: the survival strategies of Deinococcus radiodurans Annu Rev Microbiol 51 203 224
3. Bonacossa de Almeida C. Coste G. Sommer S. Bailone A. 2002 Quantification of RecA protein in Deinococcus radiodurans reveals involvement of RecA, but not LexA, in its regulation Mol Genet Genomics 268 28 41
4. Bregeon D. Matic I. Radman M. Taddei F. 1999 Inefficient mismatch repair: genetic defects and down regulation J Genet 78 21 28
5. Brugger K. Redder P. She Q. Confalonieri F. Zivanovic Y. Garrett RA. 2002 Mobile elements in archaeal genomes FEMS Microbiol Lett 206 131 141
6. Chandler M. Mahillon J. 2002 Insertion sequences revisited. In Mobile DNA II Craig NL. Craigie R. Gellert M. Lambowitz AM. (eds) Washingtion, DC American Society for Microbiology Press, pp. 305 366
7. Daly MJ. Minton KW. 1996 An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radiodurans J Bacteriol 178 4461 4471
8. Daly MJ. Ling O. Minton KW. 1994 Interplasmidic recombination following irradiation of the radioresistant bacterium Deinococcus radiodurans J Bacteriol 176 7506 7515
9. Eggington JM. Haruta N. Wood EA. Cox MM. 2004 The single-stranded DNA-binding protein of Deinococcus radiodurans BMC Microbiol 4 2
10. Eichenbaum Z. Livneh Z. 1998 UV light induces IS10 transposition in Escherichia coli Genetics 149 1173 1181
11. Feschotte C. Zhang X. Wessler SR. 2002 Miniature inverted-repeat transposable elements and their relationship to established DNA transposons. In Mobile DNA II Craig NL. Craigie R. Gellert M. Lambowitz AM. (eds) Washington, DC American Society for Microbiology Press, pp. 1147 1158
12. Gutman PD. Fuchs P. Ouyang L. Minton KW. 1993 Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans J Bacteriol 175 3581 3590
13. Hua Y. Narumi I. Gao G. Tian B. Satoh K. Kitayama S. Shen B. 2003 PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans Biochem Biophys Res Commun 306 354 360
14. Islam SM. Hua Y. Ohba H. Satoh K. Kikuchi M. Yanagisawa T. Narumi I. 2003 Characterization and distribution of IS8301 in the radioresistant bacterium Deinococcus radiodurans Genes Genet Syst 78 319 327
15. Kim M. Wolff E. Huang T. Garibyan L. Earl AM. Battista JR. Miller JH. 2004 Developing a genetic system in Deinococcus radiodurans for analyzing mutations Genetics 166 661 668
16. Lecointe F. Shevelev IV. Bailone A. Sommer S. Hubscher U. 2004 Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans Mol Microbiol 53 1721 1730
17. Levin-Zaidman S. Englander J. Shimoni E. Sharma AK. Minton KW. Minsky A. 2003 Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance? Science 299 254 256
18. Lipton MS. Pasa-Tolic L. Anderson GA. Anderson DJ. Auberry DL. Battista JR. et al. 2002 Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags Proc Natl Acad Sci USA 99 11049 11054
19. Mahillon J. Chandler M. 1998 Insertion sequences Microbiol Mol Biol Rev 62 725 774
20. Makarova KS. Aravind L. Wolf YI. Tatusov RL. Minton KW. Koonin EV. Daly MJ. 2001 Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics Microbiol Mol Biol Rev 65 44 79
21. Matic I. Taddei F. Radman M. 2004 Survival versus maintenance of genetic stability: a conflict of priorities during stress Res Microbiol 155 337 341
22. Mennecier S. Coste G. Servant P. Bailone A. Sommer S. 2004 Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans Mol Genet Genomics 272 460 469
23. Miller JH. 1972 Experiments in Molecular Genetics Cold Spring Harbor, New York Cold Spring Harbor Laboratory.
24. Minton KW. 1994 DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans Mol Microbiol 13 9 15
25. Minton KW. Daly MJ. 1995 A model for repair of radiation-induced DNA double-strand breaks in the extreme radiophile Deinococcus radiodurans Bioessays 17 457 464
26. Moseley BE. Evans DM. 1983 Isolation and properties of strains of Micrococcus (Deinococcus) radiodurans unable to excise ultraviolet light-induced pyrimidine dimers from DNA: evidence for two excision pathways J Gen Microbiol 129 2437 2445
27. Myllykallio H. Leduc D. Filee J. Liebl U. 2003 Life without dihydrofolate reductase FolA Trends Microbiol 11 220 223
28. Nagy Z. Chandler M. 2004 Regulation of transposition in bacteria Res Microbiol 155 387 398
29. Narumi I. 2003 Unlocking radiation resistance mechanisms: still a long way to go Trends Microbiol 11 422 425
30. Narumi I. Cherdchu K. Kitayama S. Watanabe H. 1997 The Deinococcus radiodurans uvrA gene: identification of mutation sites in two mitomycin-sensitive strains and the first discovery of insertion sequence element from deinobacteria Gene 198 115 126
31. Oosumi T. Garlick B. Belknap WR. 1996 Identification of putative nonautonomous transposable elements associated with several transposon families in Caenorhabditis elegans J Mol Evol 43 11 18
32. Schmid AK. Lipton MS. Mottaz H. Monroe ME. Smith RD. Lidstrom ME. 2005 Global whole-cell FTICR mass spectrometric proteomics analysis of the heat shock response in the radioresistant bacterium Deinococcus radiodurans J Proteome Res 4 709 718
33. Sekowska A. Danchin A. 1999 Identification of yrrU as the methylthioadenosine nucleosidase gene in Bacillus subtilis DNA Res 6 255 264
34. Southworth MW. Perler FB. 2002 Protein splicing of the Deinococcus radiodurans strain R1 Snf2 intein J Bacteriol 184 6387 6388
35. Sweet DM. Moseley BE. 1974 Accurate repair of ultraviolet-induced damage in Micrococcus radiodurans Mutat Res 23 311 318
36. Tempest PR. Moseley BE. 1982 Lack of ultraviolet mutagenesis in radiation-resistant bacteria Mutat Res 104 275 280
37. Tenzen T. Ohtsubo E. 1991 Preferential transposition of an IS630-associated composite transposon to TA in the 5′-CTAG-3′ sequence J Bacteriol 173 6207 6212
38. Tenzen T. Matsutani S. Ohtsubo E. 1990 Site-specific transposition of insertion sequence IS630 J Bacteriol 172 3830 3836
39. Udupa KS. O'Cain PA. Mattimore V. Battista JR. 1994 Novel ionizing radiation-sensitive mutants of Deinococcus radiodurans J Bacteriol 176 7439 7446
40. White O. Eisen JA. Heidelberg JF. Hickey EK. Peterson JD. Dodson RJ. et al. 1999 Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1 Science 286 1571 1577
41. Yang G. Hall TC. 2003 MAK, a computational tool kit for automated MITE analysis Nucleic Acids Res 31 3659 3665