-
1
-
-
0036843008
-
Inversions over the terminus region in Salmonella and Escherichia coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar typhi
-
DOI 10.1128/JB.184.22.6190-6197.2002
-
S Alokam SL Liu K Said KE Sanderson 2002 Inversions over the terminus region in Salmonella and Escherichia coli: IS200s as the sites of homologous recombination inverting the chromosome of Salmonella enterica serovar typhi J Bacteriol 184 6190 6197 12399489 10.1128/JB.184.22.6190-6197.2002 1:CAS:528:DC%2BD38XosVartLk%3D (Pubitemid 35265900)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.22
, pp. 6190-6197
-
-
Alokam, S.1
Liu, S.-L.2
Said, K.3
Sanderson, K.E.4
-
2
-
-
0000547262
-
Periodic selection in Escherichia coli
-
14808170 10.1073/pnas.37.3.146 1:STN:280:DyaG3M%2FjslOhsg%3D%3D
-
KC Atwood LK Schneider FJ Ryan 1951 Periodic selection in Escherichia coli Proc Natl Acad Sci USA 37 146 155 14808170 10.1073/pnas.37.3.146 1:STN:280:DyaG3M%2FjslOhsg%3D%3D
-
(1951)
Proc Natl Acad Sci USA
, vol.37
, pp. 146-155
-
-
Atwood, K.C.1
Schneider, L.K.2
Ryan, F.J.3
-
3
-
-
42549100016
-
Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12
-
DOI 10.1128/JB.01878-07
-
D Bartosik M Putyrski L Dziewit E Malewska M Szymanik E Jagiello J Lukasik J Baj 2008 Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12 J Bacteriol 190 3306 3313 18296518 10.1128/JB.01878-07 1:CAS:528:DC%2BD1cXlt1Kqu7s%3D (Pubitemid 351581426)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.9
, pp. 3306-3313
-
-
Bartosik, D.1
Putyrski, M.2
Dziewit, L.3
Malewska, E.4
Szymanik, M.5
Jagiello, E.6
Lukasik, J.7
Baj, J.8
-
4
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
DOI 10.1126/science.277.5331.1453
-
FR Blattner G Plunkett III CA Bloch NT Perna V Burland, et al. 1997 The complete genome sequence of Escherichia coli K-12 Science 277 1453 1462 9278503 10.1126/science.277.5331.1453 1:CAS:528:DyaK2sXlvVGnu78%3D (Pubitemid 27449228)
-
(1997)
Science
, vol.277
, Issue.5331
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
5
-
-
0028697478
-
Transposable elements and adaptation of host bacteria
-
7813917 10.1007/BF01435235 1:CAS:528:DyaK2MXislOmsL0%3D
-
M Blot 1994 Transposable elements and adaptation of host bacteria Genetica 93 5 12 7813917 10.1007/BF01435235 1:CAS:528:DyaK2MXislOmsL0%3D
-
(1994)
Genetica
, vol.93
, pp. 5-12
-
-
Blot, M.1
-
6
-
-
0020625499
-
Transposable elements as mutator genes in evolution
-
L Chao C Vargas BB Spear EC Cox 1983 Transposable elements as mutator genes in evolution Nature 303 633 635 6304533 10.1038/303633a0 1:CAS:528:DyaL3sXks1Giur8%3D (Pubitemid 13099981)
-
(1983)
Nature
, vol.303
, Issue.5918
, pp. 633-635
-
-
Chao, L.1
Vargas, C.2
Spear, B.B.3
Cox, E.C.4
-
7
-
-
0028108183
-
The evolutionary dynamics of repetitive DNA in eukaryotes
-
DOI 10.1038/371215a0
-
B Charlesworth P Sniegowski W Stephan 1994 The evolutionary dynamics of repetitive DNA in eukaryotes Nature 371 215 220 8078581 10.1038/371215a0 1:CAS:528:DyaK2cXmt1emu7o%3D (Pubitemid 24293018)
-
(1994)
Nature
, vol.371
, Issue.6494
, pp. 215-220
-
-
Charlesworth, B.1
Sniegowski, P.2
Stephan, W.3
-
8
-
-
70349690200
-
Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation
-
19763169 10.1371/journal.pgen.1000652
-
H-H Chou J Berthet CJ Marx 2009 Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation PLoS Genet 5 9 e1000652 19763169 10.1371/journal.pgen.1000652
-
(2009)
PLoS Genet
, vol.5
, Issue.9
, pp. 1000652
-
-
Chou, H.-H.1
Berthet, J.2
Marx, C.J.3
-
9
-
-
0035046481
-
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B
-
DOI 10.1128/JB.183.9.2834-2841.2001
-
VS Cooper D Schneider M Blot RE Lenski 2001 Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B J Bacteriol 183 2834 2841 11292803 10.1128/JB.183.9.2834-2841.2001 1:CAS:528:DC%2BD3MXivFOks7k%3D (Pubitemid 32319286)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.9
, pp. 2834-2841
-
-
Cooper, V.S.1
Schneider, D.2
Blot, M.3
Lenski, R.E.4
-
10
-
-
49749127949
-
Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont
-
18562339 10.1093/molbev/msn134 1:CAS:528:DC%2BD1cXhtV2it7vO
-
R Cordaux S Pichon A Ling P Pérez C Delaunay F Vavre D Bouchon P Grève 2008 Intense transpositional activity of insertion sequences in an ancient obligate endosymbiont Mol Biol Evol 25 1889 1896 18562339 10.1093/molbev/msn134 1:CAS:528:DC%2BD1cXhtV2it7vO
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1889-1896
-
-
Cordaux, R.1
Pichon, S.2
Ling, A.3
Pérez, P.4
Delaunay, C.5
Vavre, F.6
Bouchon, D.7
Grève, P.8
-
11
-
-
10844250172
-
Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis
-
DOI 10.1534/genetics.104.032136
-
JAGM de Visser ADL Akkermans RF Hoekstra WM de Vos 2004 Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis Genetics 168 1145 1157 15579676 10.1534/genetics.104.032136 (Pubitemid 40007338)
-
(2004)
Genetics
, vol.168
, Issue.3
, pp. 1145-1157
-
-
De Visser, J.A.G.M.1
Akkermans, A.D.L.2
Hoekstra, R.F.3
De Vos, W.M.4
-
12
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
DOI 10.1038/nature03842
-
E Dekel U Alon 2005 Optimality and evolutionary tuning of the expression level of a protein Nature 436 588 592 16049495 10.1038/nature03842 1:CAS:528:DC%2BD2MXmsFCgsLw%3D (Pubitemid 41112935)
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
13
-
-
73949128999
-
Oxidative stress of Burkholderia cenocepacia induces insertion sequence-mediated genomic rearrangements that interfere with macrorestriction-based genotyping
-
19889907 10.1128/JCM.01433-09 1:CAS:528:DC%2BC3cXhvFKqtLs%3D
-
P Drevinek A Baldwin L Lindenburg LT Joshi A Marchbank S Vosahlikova CG Dowson E Mahenthiralingam 2010 Oxidative stress of Burkholderia cenocepacia induces insertion sequence-mediated genomic rearrangements that interfere with macrorestriction-based genotyping J Clin Microbiol 48 34 40 19889907 10.1128/JCM.01433-09 1:CAS:528:DC%2BC3cXhvFKqtLs%3D
-
(2010)
J Clin Microbiol
, vol.48
, pp. 34-40
-
-
Drevinek, P.1
Baldwin, A.2
Lindenburg, L.3
Joshi, L.T.4
Marchbank, A.5
Vosahlikova, S.6
Dowson, C.G.7
Mahenthiralingam, E.8
-
14
-
-
0031829602
-
UV light induces IS10 transposition in Escherichia coli
-
Z Eichenbaum Z Livneh 1998 UV light induces IS10 transposition in Escherichia coli Genetics 149 1173 1181 9649512 1:CAS:528:DyaK1cXkvVSlu70%3D (Pubitemid 28334515)
-
(1998)
Genetics
, vol.149
, Issue.3
, pp. 1173-1181
-
-
Eichenbaum, Z.1
Livneh, Z.2
-
15
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (Version 3.2)
-
J Felsenstein 1989 PHYLIP-Phylogeny Inference Package (Version 3.2) Cladistics 5 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
16
-
-
0033118890
-
Regulation by nutrient limitation
-
DOI 10.1016/S1369-5274(99)80036-8
-
T Ferenci 1999 Regulation by nutrient limitation Curr Opin Microbiol 2 208 213 10322163 10.1016/S1369-5274(99)80036-8 1:CAS:528:DyaK1MXisFamtbs%3D (Pubitemid 29176947)
-
(1999)
Current Opinion in Microbiology
, vol.2
, Issue.2
, pp. 208-213
-
-
Ferenci, T.1
-
17
-
-
34547739032
-
Bacterial physiology, regulation and mutational adaptation in a chemostat environment
-
17707145 10.1016/S0065-2911(07)53003-1 1:CAS:528:DC%2BD1cXht1Wlt7k%3D
-
T Ferenci 2008 Bacterial physiology, regulation and mutational adaptation in a chemostat environment Adv Microb Physiol 53 169 229 17707145 10.1016/S0065-2911(07)53003-1 1:CAS:528:DC%2BD1cXht1Wlt7k%3D
-
(2008)
Adv Microb Physiol
, vol.53
, pp. 169-229
-
-
Ferenci, T.1
-
18
-
-
42449118998
-
The spread of a beneficial mutation in experimental bacterial populations: The influence of the environment and genotype on the fixation of rpoS mutations
-
DOI 10.1038/sj.hdy.6801077, PII 6801077
-
T Ferenci 2008 The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations Heredity 100 446 452 18073783 10.1038/sj.hdy.6801077 1:CAS:528:DC%2BD1cXkvFygu7w%3D (Pubitemid 351574180)
-
(2008)
Heredity
, vol.100
, Issue.5
, pp. 446-452
-
-
Ferenci, T.1
-
19
-
-
67549090009
-
Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12
-
19376874 10.1128/JB.00118-09 1:CAS:528:DC%2BD1MXntlemsr4%3D
-
T Ferenci Z Zhou T Betteridge Y Ren Y Liu L Feng PR Reeves L Wang 2009 Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 J Bacteriol 191 4025 4029 19376874 10.1128/JB.00118-09 1:CAS:528:DC%2BD1MXntlemsr4%3D
-
(2009)
J Bacteriol
, vol.191
, pp. 4025-4029
-
-
Ferenci, T.1
Zhou, Z.2
Betteridge, T.3
Ren, Y.4
Liu, Y.5
Feng, L.6
Reeves, P.R.7
Wang, L.8
-
21
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual population
-
PJ Gerrish RE Lenski 1998 The fate of competing beneficial mutations in an asexual population Genetica 102 127 144 9720276 10.1023/A:1017067816551 (Pubitemid 28371714)
-
(1998)
Genetica
, vol.102-103
, pp. 127-144
-
-
Gerrish, P.J.1
Lenski, R.E.2
-
22
-
-
22544481754
-
A novel insertion sequence element, ISYen2, as an epidemiological marker for weakly pathogenic bioserotypes of Yersinia enterocolitica
-
DOI 10.1016/j.ijmm.2005.05.007, PII S1438422105000834
-
A Golubov R Gierczynski J Heesemann A Rakin 2005 A novel insertion sequence element, ISYen2, as an epidemiological marker for weakly pathogenic bioserotypes of Yersinia enterocolitica Int J Med Microbiol 295 213 226 16128396 10.1016/j.ijmm.2005.05.007 1:CAS:528:DC%2BD2MXhtFWmtb7O (Pubitemid 41020795)
-
(2005)
International Journal of Medical Microbiology
, vol.295
, Issue.4
, pp. 213-226
-
-
Golubov, A.1
Gierczynski, R.2
Heesemann, J.3
Rakin, A.4
-
23
-
-
56649114134
-
Transposition of an insertion sequence, ISTth7, in the genome of the extreme thermophile Thermus thermophilus HB8
-
19016874 10.1111/j.1574-6968.2008.01389.x 1:CAS:528:DC%2BD1cXhsFWgsb7O
-
ST Gregory AE Dahlberg 2008 Transposition of an insertion sequence, ISTth7, in the genome of the extreme thermophile Thermus thermophilus HB8 FEMS Microbiol Lett 289 187 192 19016874 10.1111/j.1574-6968.2008.01389.x 1:CAS:528:DC%2BD1cXhsFWgsb7O
-
(2008)
FEMS Microbiol Lett
, vol.289
, pp. 187-192
-
-
Gregory, S.T.1
Dahlberg, A.E.2
-
24
-
-
0033061057
-
Spectra of spontaneous growth-dependent and adaptive mutations at ebgR
-
BG Hall 1999 Spectra of spontaneous growth-dependent and adaptive mutations at ebgR J Bacteriol 181 1149 1155 9973340 1:CAS:528:DyaK1MXhsV2ru7c%3D (Pubitemid 29119552)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.4
, pp. 1149-1155
-
-
Hall, B.G.1
-
25
-
-
0024635692
-
IS103, a new insertion element in Escherichia coli: Characterization and distribution in natural populations
-
2541046 1:CAS:528:DyaK3cXhsFWq
-
BG Hall LL Parker PW Betts RF DuBose SA Sawyer DL Hartl 1989 IS103, a new insertion element in Escherichia coli: characterization and distribution in natural populations Genetics 121 423 431 2541046 1:CAS:528:DyaK3cXhsFWq
-
(1989)
Genetics
, vol.121
, pp. 423-431
-
-
Hall, B.G.1
Parker, L.L.2
Betts, P.W.3
Dubose, R.F.4
Sawyer, S.A.5
Hartl, D.L.6
-
26
-
-
0036198628
-
Recent insights into the general stress response regulatory network in Escherichia coli
-
R Hengge-Aronis 2002 Recent insights into the general stress response regulatory network in Escherichia coli J Mol Microbiol Biotechnol 4 341 346 11931567 1:CAS:528:DC%2BD38XisFGiu7s%3D (Pubitemid 34256711)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.3
, pp. 341-346
-
-
Hengge-Aronis, R.1
-
27
-
-
70350686881
-
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)
-
19786035 10.1016/j.jmb.2009.09.052 1:CAS:528:DC%2BD1MXhsVKnsbrO
-
H Jeong V Barbe CH Lee D Vallenet DS Yu SH Choi, et al. 2009 Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) J Mol Biol 394 644 652 19786035 10.1016/j.jmb.2009.09.052 1:CAS:528:DC%2BD1MXhsVKnsbrO
-
(2009)
J Mol Biol
, vol.394
, pp. 644-652
-
-
Jeong, H.1
Barbe, V.2
Lee, C.H.3
Vallenet, D.4
Yu, D.S.5
Choi, S.H.6
-
28
-
-
76149088429
-
Crucial role for insertion sequence elements in Lactobacillus helveticus evolution as revealed by interstrain genomic comparison
-
19880644 10.1128/AEM.01845-09 1:CAS:528:DC%2BC3cXntFOluw%3D%3D
-
P Kaleta J O'Callaghan GF Fitzgerald TP Beresford RP Ross 2010 Crucial role for insertion sequence elements in Lactobacillus helveticus evolution as revealed by interstrain genomic comparison Appl Environ Microbiol 76 212 220 19880644 10.1128/AEM.01845-09 1:CAS:528:DC%2BC3cXntFOluw%3D%3D
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 212-220
-
-
Kaleta, P.1
O'Callaghan, J.2
Fitzgerald, G.F.3
Beresford, T.P.4
Ross, R.P.5
-
29
-
-
75549084423
-
ISbrowser: An extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
-
19906702 10.1093/nar/gkp947 1:CAS:528:DC%2BC3cXktlKrtQ%3D%3D
-
P Kichenaradja P Siguier J Pérochon M Chandler 2010 ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes Nucleic Acids Res 38 Database issue D62 D68 19906702 10.1093/nar/gkp947 1:CAS:528:DC%2BC3cXktlKrtQ%3D%3D
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
-
-
Kichenaradja, P.1
Siguier, P.2
Pérochon, J.3
Chandler, M.4
-
30
-
-
0028903665
-
DNA sequence changes in mutations in the tonB gene on the chromosome of Escherichia coli K-12: Insertion elements dominate the mutational spectra
-
7772380 10.1266/jjg.70.35 1:CAS:528:DyaK2MXmsV2mt7g%3D
-
K Kitamura Y Torii C Matsuoka K Yamamoto 1995 DNA sequence changes in mutations in the tonB gene on the chromosome of Escherichia coli K-12: Insertion elements dominate the mutational spectra Jpn J Genet 70 35 46 7772380 10.1266/jjg.70.35 1:CAS:528:DyaK2MXmsV2mt7g%3D
-
(1995)
Jpn J Genet
, vol.70
, pp. 35-46
-
-
Kitamura, K.1
Torii, Y.2
Matsuoka, C.3
Yamamoto, K.4
-
31
-
-
0029860724
-
High mutation frequencies among Escherichia coli and Salmonella pathogens
-
DOI 10.1126/science.274.5290.1208
-
JE LeClerc B Li WL Payne T Cebula 1996 High mutation frequencies among Escherichia coli and Salmonella pathogens Science 274 1208 1211 8895473 10.1126/science.274.5290.1208 1:CAS:528:DyaK28XmvVyiurw%3D (Pubitemid 26389290)
-
(1996)
Science
, vol.274
, Issue.5290
, pp. 1208-1211
-
-
LeClerc, J.E.1
Li, B.2
Payne, W.L.3
Cebula, T.A.4
-
32
-
-
33746615552
-
Clonal adaptive radiation in a constant environment
-
DOI 10.1126/science.1129865
-
R Maharjan S Seeto L Notley-McRobb T Ferenci 2006 Clonal adaptive radiation in a constant environment Science 313 514 517 16825532 10.1126/science.1129865 1:CAS:528:DC%2BD28Xnt1Knt78%3D (Pubitemid 44148454)
-
(2006)
Science
, vol.313
, Issue.5786
, pp. 514-517
-
-
Maharjan, R.1
Seeto, S.2
Notley-McRobb, L.3
Ferenci, T.4
-
33
-
-
33947157567
-
Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population
-
DOI 10.1128/JB.01414-06
-
RP Maharjan S Seeto T Ferenci 2007 Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population J Bacteriol 189 2350 2358 17158684 10.1128/JB.01414-06 1:CAS:528: DC%2BD2sXjt1Gksrg%3D (Pubitemid 46411349)
-
(2007)
Journal of Bacteriology
, vol.189
, Issue.6
, pp. 2350-2358
-
-
Maharjan, R.P.1
Seeto, S.2
Ferenci, T.3
-
34
-
-
77956532421
-
Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli
-
20543067 10.1128/JB.00368-10 1:CAS:528:DC%2BC3cXhtlegsbbO
-
R Maharjan Z Zhou Y Ren Y Li J Gaffé D Schneider C McKenzie PR Reeves T Ferenci L Wang 2010 Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli J Bacteriol 192 4517 4521 20543067 10.1128/JB.00368-10 1:CAS:528:DC%2BC3cXhtlegsbbO
-
(2010)
J Bacteriol
, vol.192
, pp. 4517-4521
-
-
Maharjan, R.1
Zhou, Z.2
Ren, Y.3
Li, Y.4
Gaffé, J.5
Schneider, D.6
McKenzie, C.7
Reeves, P.R.8
Ferenci, T.9
Wang, L.10
-
36
-
-
0000450903
-
The control of gene expression in maize
-
B McClintock 1965 The control of gene expression in maize Brookhaven Symp Biol 18 162 184
-
(1965)
Brookhaven Symp Biol
, vol.18
, pp. 162-184
-
-
McClintock, B.1
-
38
-
-
0029843192
-
Spontaneous mutators in bacteria: Insights into pathways of mutagenesis and repair
-
DOI 10.1146/annurev.micro.50.1.625
-
JH Miller 1996 Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair Annu Rev Microbiol 50 625 643 8905093 10.1146/annurev.micro.50.1.625 1:CAS:528:DyaK28XmtFGhtrg%3D (Pubitemid 26337476)
-
(1996)
Annual Review of Microbiology
, vol.50
, pp. 625-643
-
-
Miller, J.H.1
-
39
-
-
0028354540
-
Insertion sequence-related genetic variation in resting Escherichia coli K-12
-
T Naas M Blot WM Fitch W Arber 1994 Insertion sequence-related genetic variation in resting Escherichia coli K-12 Genetics 136 721 730 7911771 1:CAS:528:DyaK2MXpsFWh (Pubitemid 24085625)
-
(1994)
Genetics
, vol.136
, Issue.3
, pp. 721-730
-
-
Naas, T.1
Blot, M.2
Fitch, W.M.3
Arber, W.4
-
40
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
DOI 10.1073/pnas.76.10.5269
-
M Nei WH Li 1979 Mathematical model for studying genetic variation in terms of restriction endonucleases Proc Natl Acad Sci USA 76 5269 5273 291943 10.1073/pnas.76.10.5269 1:CAS:528:DyaL3cXitVWn (Pubitemid 10236121)
-
(1979)
Proceedings of the National Academy of Sciences of the United States of America
, vol.76
, Issue.10
, pp. 5269-5273
-
-
Nei, M.1
Li, W.H.2
-
41
-
-
0033068946
-
The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli
-
L Notley-McRobb T Ferenci 1999 The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli Environ Microbiol 1 45 52 11207717 10.1046/j.1462-2920.1999.00003.x 1:CAS:528:DyaK1MXit1Wks7g%3D (Pubitemid 129640027)
-
(1999)
Environmental Microbiology
, vol.1
, Issue.1
, pp. 45-52
-
-
Notley-McRobb, L.1
Ferenci, T.2
-
42
-
-
0034532082
-
Experimental analysis of molecular events during mutational periodic selections in bacterial evolution
-
L Notley-McRobb T Ferenci 2000 Experimental analysis of molecular events during mutational periodic selections in bacterial evolution Genetics 156 1493 1501 11102352 1:CAS:528:DC%2BD3MXjsFGjsA%3D%3D (Pubitemid 32001220)
-
(2000)
Genetics
, vol.156
, Issue.4
, pp. 1493-1501
-
-
Notley-McRobb, L.1
Ferenci, T.2
-
43
-
-
0036174615
-
Regulation of mutY and nature of mutator mutations in Escherichia coli populations under nutrient limitation
-
L Notley-McRobb R Pinto S Seeto T Ferenci 2002 Regulation of mutY and nature of mutator mutations in Escherichia coli populations under nutrient limitation J Bacteriol 184 739 745 11790743 10.1128/JB.184.3.739-745.2002 1:CAS:528:DC%2BD38XntVGgsw%3D%3D (Pubitemid 34150220)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.3
, pp. 739-745
-
-
Notley-McRobb, L.1
Pinto, R.2
Seeto, S.3
Ferenci, T.4
-
44
-
-
0037461340
-
The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations
-
L Notley-McRobb S Seeto T Ferenci 2003 The influence of cellular physiology on the initiation of mutational pathways in Escherichia coli populations Proc R Soc Lond B 270 843 848 10.1098/rspb.2002.2295 (Pubitemid 36459718)
-
(2003)
Proceedings of the Royal Society B: Biological Sciences
, vol.270
, Issue.1517
, pp. 843-848
-
-
Notley-McRobb, L.1
Seeto, S.2
Ferenci, T.3
-
45
-
-
0033616661
-
Genomic evolution during a 10,000-generation experiment with bacteria
-
DOI 10.1073/pnas.96.7.3807
-
D Papadopoulos D Schneider J Meier-Eiss W Arber RE Lenski M Blot 1999 Genomic evolution during a 10, 000-generation experiment with bacteria Proc Natl Acad Sci USA 96 3807 3812 10097119 10.1073/pnas.96.7.3807 1:CAS:528: DyaK1MXjslChsrY%3D (Pubitemid 29168992)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.7
, pp. 3807-3812
-
-
Papadopoulos, D.1
Schneider, D.2
Meier-Eiss, J.3
Arber, W.4
Lenski, R.E.5
Blot, M.6
-
46
-
-
76749140477
-
Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence
-
20090938 10.1371/journal.pgen.1000799
-
C Pasternak B Ton-Hoang G Coste A Bailone M Chandler S Sommer 2010 Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence PLoS Genet 6 1 e1000799 20090938 10.1371/journal.pgen.1000799
-
(2010)
PLoS Genet
, vol.6
, Issue.1
, pp. 1000799
-
-
Pasternak, C.1
Ton-Hoang, B.2
Coste, G.3
Bailone, A.4
Chandler, M.5
Sommer, S.6
-
47
-
-
0029670395
-
Glc locus of Escherichia coli: Characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein
-
8606183 1:CAS:528:DyaK28XhvFOkt74%3D
-
MT Pellicer J Badia J Aguilar L Baldoma 1996 glc locus of Escherichia coli: characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein J Bacteriol 178 2051 2059 8606183 1:CAS:528: DyaK28XhvFOkt74%3D
-
(1996)
J Bacteriol
, vol.178
, pp. 2051-2059
-
-
Pellicer, M.T.1
Badia, J.2
Aguilar, J.3
Baldoma, L.4
-
48
-
-
33747849237
-
Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
-
DOI 10.1534/genetics.105.049619
-
L Pelosi L Kühn D Guetta J Garin J Geiselmann RE Lenski D Schneider 2006 Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli Genetics 173 1851 1869 16702438 10.1534/genetics.105.049619 1:CAS:528:DC%2BD28XhtVCgtrnO (Pubitemid 44285668)
-
(2006)
Genetics
, vol.173
, Issue.4
, pp. 1851-1869
-
-
Pelosi, L.1
Kuhn, L.2
Guetta, D.3
Garin, J.4
Geiselmann, J.5
Lenski, R.E.6
Schneider, D.7
-
49
-
-
27744450676
-
Escherichia coli starvation diets: Essential nutrients weigh in distinctly
-
DOI 10.1128/JB.187.22.7549-7553.2005
-
CN Peterson MJ Mandel TJ Silhavy 2005 Escherichia coli starvation diets: essential nutrients weigh in distinctly J Bacteriol 187 7549 7553 16267278 10.1128/JB.187.22.7549-7553.2005 1:CAS:528:DC%2BD2MXht1WnurnI (Pubitemid 41587692)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.22
, pp. 7549-7553
-
-
Peterson, C.N.1
Mandel, M.J.2
Silhavy, T.J.3
-
50
-
-
63449114338
-
Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli
-
19047356 10.1128/JB.01419-08 1:CAS:528:DC%2BD1MXhtlGjsL8%3D
-
N Philippe L Pelosi RE Lenski D Schneider 2009 Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli J Bacteriol 191 909 921 19047356 10.1128/JB.01419-08 1:CAS:528:DC%2BD1MXhtlGjsL8%3D
-
(2009)
J Bacteriol
, vol.191
, pp. 909-921
-
-
Philippe, N.1
Pelosi, L.2
Lenski, R.E.3
Schneider, D.4
-
51
-
-
0016681047
-
IS1 is involved in deletion formation in the gal region of E. coli K-12
-
1101028 1:CAS:528:DyaE2MXkvFeksb0%3D
-
HJ Reif H Saedler 1975 IS1 is involved in deletion formation in the gal region of E. coli K-12 Mol Gen Genet 137 17 28 1101028 1:CAS:528: DyaE2MXkvFeksb0%3D
-
(1975)
Mol Gen Genet
, vol.137
, pp. 17-28
-
-
Reif, H.J.1
Saedler, H.2
-
52
-
-
0019772965
-
Insertion of DNA activates the cryptic bgl operon in E.coli K12
-
AE Reynolds J Felton A Wright 1981 Insertion of DNA activates the cryptic bgl operon in Escherichia coli K-12 Nature 293 625 629 6270569 10.1038/293625a0 1:CAS:528:DyaL38XpvVGrtw%3D%3D (Pubitemid 12175414)
-
(1981)
Nature
, vol.293
, Issue.5834
, pp. 625-629
-
-
Reynolds, A.E.1
Felton, J.2
Wright, A.3
-
54
-
-
0026574764
-
An Escherichia coli plasmid-based, mutational system in which supF mutants are selectable: Insertion elements dominate the spontaneous spectra
-
1383739 1:CAS:528:DyaK3sXhslCjsA%3D%3D
-
H Rodriguez ET Snow U Bhat EL Loechler 1992 An Escherichia coli plasmid-based, mutational system in which supF mutants are selectable: insertion elements dominate the spontaneous spectra Mutat Res 270 219 231 1383739 1:CAS:528:DyaK3sXhslCjsA%3D%3D
-
(1992)
Mutat Res
, vol.270
, pp. 219-231
-
-
Rodriguez, H.1
Snow, E.T.2
Bhat, U.3
Loechler, E.L.4
-
55
-
-
39549114621
-
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains
-
DOI 10.1186/gb-2007-8-6-r102
-
L Rohmer C Fong S Abmayr M Wasnick TJ Larson Freeman M Radey, et al. 2007 Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains Genome Biol 8 R102 17550600 10.1186/gb-2007-8-6-r102 (Pubitemid 351903178)
-
(2007)
Genome Biology
, vol.8
, Issue.6
-
-
Rohmer, L.1
Fong, C.2
Abmayr, S.3
Wasnick, M.4
Larson Freeman, T.J.5
Radey, M.6
Guina, T.7
Svensson, K.8
Hayden, H.S.9
Jacobs, M.10
Gallagher, L.A.11
Manoil, C.12
Ernst, R.K.13
Drees, B.14
Buckley, D.15
Haugen, E.16
Bovee, D.17
Zhou, Y.18
Chang, J.19
Levy, R.20
Lim, R.21
Gillett, W.22
Guenthener, D.23
Kang, A.24
Shaffer, S.A.25
Taylor, G.26
Chen, J.27
Gallis, B.28
D'Argenio, D.A.29
Forsman, M.30
Olson, M.V.31
Goodlett, D.R.32
Kaul, R.33
Miller, S.I.34
Brittnacher, M.J.35
more..
-
56
-
-
0016256082
-
IS2, a genetic element for turn-off and turn-on of gene activity in Escherichia coli
-
4610339 10.1007/BF00268569 1:CAS:528:DyaE2MXhtlyiuw%3D%3D
-
H Saedler HJ Reif S Hu N Davidson 1974 IS2, a genetic element for turn-off and turn-on of gene activity in Escherichia coli Mol Gen Genet 132 265 289 4610339 10.1007/BF00268569 1:CAS:528:DyaE2MXhtlyiuw%3D%3D
-
(1974)
Mol Gen Genet
, vol.132
, pp. 265-289
-
-
Saedler, H.1
Reif, H.J.2
Hu, S.3
Davidson, N.4
-
57
-
-
0023375195
-
The Neighbor-joining method: A new method for reconstructing phylogenetic trees
-
3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
-
N Saitou M Nei 1987 The Neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
58
-
-
0023122287
-
Distribution and abundance of insertion sequences among natural isolates of Escherichia coli
-
SA Sawyer DE Dykhuisen RF DuBose L Green T Mutangadura-Mhlanga DF Wolczyk DL Hartl 1987 Distribution and abundance of insertion sequences among natural isolates of Escherichia coli Genetics 115 51 63 3030884 1:CAS:528: DyaL2sXhtFCgu7k%3D (Pubitemid 17001141)
-
(1987)
Genetics
, vol.115
, Issue.1
, pp. 51-63
-
-
Sawyer, S.A.1
Dykhuizen, D.E.2
DuBose, R.F.3
-
59
-
-
0033786720
-
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements
-
11014799 1:CAS:528:DC%2BD3cXnvV2gurc%3D
-
D Schneider E Duperchy E Coursange RE Lenski M Blot 2000 Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements Genetics 156 477 488 11014799 1:CAS:528:DC%2BD3cXnvV2gurc%3D
-
(2000)
Genetics
, vol.156
, pp. 477-488
-
-
Schneider, D.1
Duperchy, E.2
Coursange, E.3
Lenski, R.E.4
Blot, M.5
-
60
-
-
19044384376
-
Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers
-
12106505 10.1186/1471-2180-2-18
-
D Schneider E Duperchy J Depeyrot E Coursange RE Lenski M Blot 2002 Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers BMC Microbiol 2 18 12106505 10.1186/1471-2180-2- 18
-
(2002)
BMC Microbiol
, vol.2
, pp. 18
-
-
Schneider, D.1
Duperchy, E.2
Depeyrot, J.3
Coursange, E.4
Lenski, R.E.5
Blot, M.6
-
61
-
-
33748876971
-
Insertion sequences in prokaryotic genomes
-
DOI 10.1016/j.mib.2006.08.005, PII S1369527406001275, Antimicrobials/Genomics
-
P Siguier J Filée M Chandler 2006 Insertion sequences in prokaryotic genomes Curr Opin Microbiol 9 526 531 16935554 10.1016/j.mib.2006. 08.005 1:CAS:528:DC%2BD28XpvFSisLg%3D (Pubitemid 44419502)
-
(2006)
Current Opinion in Microbiology
, vol.9
, Issue.5
, pp. 526-531
-
-
Siguier, P.1
Filee, J.2
Chandler, M.3
-
62
-
-
56049123424
-
Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth
-
18757947 10.1534/genetics.108.091330
-
SC Sleight C Orlic D Schneider RE Lenski 2008 Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth Genetics 180 431 443 18757947 10.1534/genetics.108.091330
-
(2008)
Genetics
, vol.180
, pp. 431-443
-
-
Sleight, S.C.1
Orlic, C.2
Schneider, D.3
Lenski, R.E.4
-
63
-
-
0030620273
-
Evolution of high mutation rates in experimental populations of E. coli
-
DOI 10.1038/42701
-
PD Sniegowski PJ Gerrish RE Lenski 1997 Evolution of high mutation rates in experimental populations of Escherichia coli Nature 387 703 705 9192894 10.1038/42701 1:CAS:528:DyaK2sXktVWmsrg%3D (Pubitemid 27270609)
-
(1997)
Nature
, vol.387
, Issue.6634
, pp. 703-705
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Lenski, R.E.3
-
64
-
-
77954054691
-
The early stage of bacterial genome-reductive evolution in the host
-
20523904 10.1371/journal.ppat.1000922
-
H Song J Hwang H Yi RL Ulrich Y Yu WC Nierman HS Kim 2010 The early stage of bacterial genome-reductive evolution in the host PLoS Pathog 6 5 e1000922 20523904 10.1371/journal.ppat.1000922
-
(2010)
PLoS Pathog
, vol.6
, Issue.5
, pp. 1000922
-
-
Song, H.1
Hwang, J.2
Yi, H.3
Ulrich, R.L.4
Yu, Y.5
Nierman, W.C.6
Kim, H.S.7
-
65
-
-
77955955965
-
The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli
-
20400481 10.1093/molbev/msq101 1:CAS:528:DC%2BC3cXhtVGrt7nN
-
DM Stoebel CJ Dorman 2010 The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli Mol Biol Evol 27 2105 2112 20400481 10.1093/molbev/msq101 1:CAS:528:DC%2BC3cXhtVGrt7nN
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2105-2112
-
-
Stoebel, D.M.1
Dorman, C.J.2
-
66
-
-
70350440304
-
A novel insertion sequence derepresses efflux pump expression and preadapts Pseudomonas putida S12 for extreme solvent stress
-
19717594 10.1128/JB.00832-09 1:CAS:528:DC%2BD1MXhtl2itbrF
-
X Sun JJ Dennis 2009 A novel insertion sequence derepresses efflux pump expression and preadapts Pseudomonas putida S12 for extreme solvent stress J Bacteriol 191 6773 6777 19717594 10.1128/JB.00832-09 1:CAS:528: DC%2BD1MXhtl2itbrF
-
(2009)
J Bacteriol
, vol.191
, pp. 6773-6777
-
-
Sun, X.1
Dennis, J.J.2
-
67
-
-
70350173307
-
Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium
-
19474201 10.1534/genetics.109.103028 1:CAS:528:DC%2BD1MXhtFGktbfN
-
S Sun OG Berg JR Roth DI Andersson 2009 Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium Genetics 182 1183 1195 19474201 10.1534/genetics.109.103028 1:CAS:528:DC%2BD1MXhtFGktbfN
-
(2009)
Genetics
, vol.182
, pp. 1183-1195
-
-
Sun, S.1
Berg, O.G.2
Roth, J.R.3
Andersson, D.I.4
-
68
-
-
0031876504
-
Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli
-
DS Treves S Manning J Adams 1998 Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli Mol Biol Evol 15 789 797 9656481 1:CAS:528:DyaK1cXksFCisb8%3D (Pubitemid 28321878)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.7
, pp. 789-797
-
-
Treves, D.S.1
Manning, S.2
Adams, J.3
-
69
-
-
77958493094
-
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation
-
20639316 10.1093/gbe/evq035
-
L Wang B Spira Z Zhou L Feng RP Maharjan X Li F Li C McKenzie PR Reeves T Ferenci 2010 Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation Genome Biol Evol 2 478 487 20639316 10.1093/gbe/evq035
-
(2010)
Genome Biol Evol
, vol.2
, pp. 478-487
-
-
Wang, L.1
Spira, B.2
Zhou, Z.3
Feng, L.4
Maharjan, R.P.5
Li, X.6
Li, F.7
McKenzie, C.8
Reeves, P.R.9
Ferenci, T.10
-
70
-
-
10844220491
-
Clonal expansion of a globally disseminated lineage of Mycobacterium tuberculosis with low IS6110 copy numbers
-
DOI 10.1128/JCM.42.12.5774-5782.2004
-
RM Warren TC Victor EM Streicher M Richardson GD van der Spuy R Johnson VN Chihota C Locht P Supply PD van Helden 2004 Clonal expansion of a globally disseminated lineage of Mycobacterium tuberculosis with low IS6110 copy numbers J Clin Microbiol 42 5774 5782 15583312 10.1128/JCM.42.12.5774-5782.2004 1:CAS:528:DC%2BD2MXkt12ktQ%3D%3D (Pubitemid 39664366)
-
(2004)
Journal of Clinical Microbiology
, vol.42
, Issue.12
, pp. 5774-5782
-
-
Warren, R.M.1
Victor, T.C.2
Streicher, E.M.3
Richardson, M.4
Van Der Spuy, G.D.5
Johnson, R.6
Chihota, V.N.7
Locht, C.8
Supply, P.9
Van Helden, P.D.10
-
71
-
-
0031771290
-
Oxygen-insensitive nitroreductases: Analysis of the roles of nfsA and nfsB in development of resistance to 5-nitrofuran derivatives in Escherichia coli
-
J Whiteway P Koziarz J Veall N Sandhu P Kumar B Hoecher IB Lambert 1998 Oxygen-insensitive nitroreductases: analyses of the roles of nfsA and nfsB in development of resistance to 5-nitrofuran derivatives in Escherichia coli J Bacteriol 180 5529 5539 9791100 1:CAS:528:DyaK1cXnt1WqtLo%3D (Pubitemid 28489842)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.21
, pp. 5529-5539
-
-
Whiteway, J.1
Koziarz, P.2
Veall, J.3
Sandhu, N.4
Kumar, P.5
Hoecher, B.6
Lambert, I.B.7
-
72
-
-
73349086578
-
A novel mechanism of transposon-mediated gene activation
-
19834539 10.1371/journal.pgen.1000689
-
Z Zhang MH Saier Jr 2009 A novel mechanism of transposon-mediated gene activation PLoS Genet 5 10 e1000689 19834539 10.1371/journal.pgen.1000689
-
(2009)
PLoS Genet
, vol.5
, Issue.10
, pp. 1000689
-
-
Zhang, Z.1
Saier, Jr.M.H.2
-
73
-
-
77949759826
-
Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli
-
20097855 10.1128/JB.01085-09 1:CAS:528:DC%2BC3cXksVOhsLs%3D
-
Z Zhang MR Yen MH Saier Jr 2010 Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli J Bacteriol 192 2013 2019 20097855 10.1128/JB.01085-09 1:CAS:528:DC%2BC3cXksVOhsLs%3D
-
(2010)
J Bacteriol
, vol.192
, pp. 2013-2019
-
-
Zhang, Z.1
Yen, M.R.2
Saier, Jr.M.H.3
-
74
-
-
39549116934
-
Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea
-
DOI 10.1186/1471-2164-9-36
-
F Zhou V Olman Y Xu 2008 Insertion sequences show diverse recent activities in cyanobacteria and archea BMC Genomics 9 36 18218090 10.1186/1471-2164-9-36 (Pubitemid 351280036)
-
(2008)
BMC Genomics
, vol.9
, pp. 36
-
-
Zhou, F.1
Olman, V.2
Xu, Y.3
-
75
-
-
0041817649
-
Bacterial evolution through the selective loss of beneficial genes: Trade-offs in expression involving two loci
-
ER Zinser D Schneider M Blot R Kolter 2003 Bacterial evolution through the selective loss of beneficial genes: trade-offs in expression involving two loci Genetics 164 1271 1277 12930738 1:CAS:528:DC%2BD3sXnvF2nsLs%3D (Pubitemid 37102195)
-
(2003)
Genetics
, vol.164
, Issue.4
, pp. 1271-1277
-
-
Zinser, E.R.1
Schneider, D.2
Blot, M.3
Kolter, R.4
|