메뉴 건너뛰기




Volumn 9, Issue 1, 2016, Pages

Mutant generation by allelic exchange and genome resequencing of the biobutanol organism Clostridium acetobutylicum ATCC 824

Author keywords

Allelic exchange; Clostridium acetobutylicum; codA; Counter selection marker; In frame deletion; pyrE; Whole genome re sequencing

Indexed keywords

AMYLASES; CLOSTRIDIUM; COSMOLOGY; GENETIC ENGINEERING; METABOLIC ENGINEERING; RESTORATION;

EID: 84952938924     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-015-0410-0     Document Type: Article
Times cited : (55)

References (45)
  • 2
    • 84859865399 scopus 로고    scopus 로고
    • Life-threatening clostridial infections
    • Stevens DL, Aldape MJ, Bryant AE. Life-threatening clostridial infections. Anaerobe. 2012;18:254-9.
    • (2012) Anaerobe , vol.18 , pp. 254-259
    • Stevens, D.L.1    Aldape, M.J.2    Bryant, A.E.3
  • 3
    • 84924710076 scopus 로고    scopus 로고
    • Metabolic engineering of clostridia for the production of chemicals
    • 1:CAS:528:DC%2BC2cXitFygt7fN
    • Cho C, Jang Y-S, Moon HG, Lee J, Lee SY. Metabolic engineering of clostridia for the production of chemicals. Biofuels Bioprod Biorefin. 2015;9:211-25.
    • (2015) Biofuels Bioprod Biorefin , vol.9 , pp. 211-225
    • Cho, C.1    Jang, Y.-S.2    Moon, H.G.3    Lee, J.4    Lee, S.Y.5
  • 4
    • 0028889638 scopus 로고
    • Taxonomy and phylogeny of industrial solvent-producing clostridia
    • 1:STN:280:DyaK28%2Fhs1OhsA%3D%3D
    • Keis S, Bennett CF, Ward VK, Jones DT. Taxonomy and phylogeny of industrial solvent-producing clostridia. Int J Syst Bacteriol. 1995;45(4):693-705.
    • (1995) Int J Syst Bacteriol , vol.45 , Issue.4 , pp. 693-705
    • Keis, S.1    Bennett, C.F.2    Ward, V.K.3    Jones, D.T.4
  • 5
    • 0022970603 scopus 로고
    • Acetone-butanol fermentation revisited
    • 1:CAS:528:DyaL2sXkvVGltg%3D%3D
    • Jones DT, Woods DR. Acetone-butanol fermentation revisited. Microbiol Rev. 1986;50(4):484-524.
    • (1986) Microbiol Rev , vol.50 , Issue.4 , pp. 484-524
    • Jones, D.T.1    Woods, D.R.2
  • 6
    • 84903585132 scopus 로고    scopus 로고
    • Application of new metabolic engineering tools for Clostridium acetobutylicum
    • Lütke-Eversloh T. Application of new metabolic engineering tools for Clostridium acetobutylicum. Appl Microbiol Biotechnol. 2014;98(13):5823-37.
    • (2014) Appl Microbiol Biotechnol , vol.98 , Issue.13 , pp. 5823-5837
    • Lütke-Eversloh, T.1
  • 7
    • 2042480078 scopus 로고    scopus 로고
    • Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824
    • Green EM, Bennett GN. Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824. Appl Biochem Biotechnol. 1996;57(58):213-21.
    • (1996) Appl Biochem Biotechnol , vol.57 , Issue.58 , pp. 213-221
    • Green, E.M.1    Bennett, G.N.2
  • 8
    • 0029846031 scopus 로고    scopus 로고
    • Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DyaK28Xlt1GmtLg%3D
    • Green EM, Boynton ZL, Harris LM, Rudolph FB, Papoutsakis ET, Bennett GN. Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824. Microbiol. 1996;142(8):2079-86.
    • (1996) Microbiol , vol.142 , Issue.8 , pp. 2079-2086
    • Green, E.M.1    Boynton, Z.L.2    Harris, L.M.3    Rudolph, F.B.4    Papoutsakis, E.T.5    Bennett, G.N.6
  • 9
    • 0032934363 scopus 로고    scopus 로고
    • Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor
    • 1:CAS:528:DyaK1MXitFWlsg%3D%3D
    • Nair RV, Green EM, Watson DE, Bennett GN, Papoutsakis ET. Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor. J Bacteriol. 1999;181(1):319-30.
    • (1999) J Bacteriol , vol.181 , Issue.1 , pp. 319-330
    • Nair, R.V.1    Green, E.M.2    Watson, D.E.3    Bennett, G.N.4    Papoutsakis, E.T.5
  • 10
    • 0027955651 scopus 로고
    • Targeted gene integration of genes into the Clostridium acetobutylicum chromosome
    • 1:CAS:528:DyaK2cXivFSqs7c%3D
    • Wilkinson SR, Young M. Targeted gene integration of genes into the Clostridium acetobutylicum chromosome. Microbiol. 1994;140:89-95.
    • (1994) Microbiol , vol.140 , pp. 89-95
    • Wilkinson, S.R.1    Young, M.2
  • 11
    • 34547750510 scopus 로고    scopus 로고
    • Disruption of a toxin gene by introduction of a foreign gene into the chromosome of Clostridium perfringens using targetron-induced mutagenesis
    • 1:CAS:528:DC%2BD2sXovFSrurw%3D
    • Chen Y, Caruso L, McClane B, Fisher D, Gupta P. Disruption of a toxin gene by introduction of a foreign gene into the chromosome of Clostridium perfringens using targetron-induced mutagenesis. Plasmid. 2007;58:182-9.
    • (2007) Plasmid , vol.58 , pp. 182-189
    • Chen, Y.1    Caruso, L.2    McClane, B.3    Fisher, D.4    Gupta, P.5
  • 12
    • 36248966555 scopus 로고    scopus 로고
    • Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum
    • 1:CAS:528:DC%2BD2sXhtlWjsbvI
    • Shao L, Hu S, Yang Y, Gu Y, Chen J, Yang Y, Jiang W, Yang S. Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum. Cell Res. 2007;17:963-5.
    • (2007) Cell Res , vol.17 , pp. 963-965
    • Shao, L.1    Hu, S.2    Yang, Y.3    Gu, Y.4    Chen, J.5    Yang, Y.6    Jiang, W.7    Yang, S.8
  • 16
    • 84877696851 scopus 로고    scopus 로고
    • ClosTron-mediated engineering of Clostridium
    • Kuehne SA, Minton NP. ClosTron-mediated engineering of Clostridium. Bioengineered. 2012;3(4):247-54.
    • (2012) Bioengineered , vol.3 , Issue.4 , pp. 247-254
    • Kuehne, S.A.1    Minton, N.P.2
  • 17
    • 84930380984 scopus 로고    scopus 로고
    • Current progress of targetron technology: Development, improvement and application in metabolic engineering
    • 1:CAS:528:DC%2BC2MXkvVWlsbY%3D
    • Liu Y-J, Zhang J, Cui G-Z, Cui Q. Current progress of targetron technology: development, improvement and application in metabolic engineering. Biotechnol J. 2015;10:855-65.
    • (2015) Biotechnol J , vol.10 , pp. 855-865
    • Liu, Y.-J.1    Zhang, J.2    Cui, G.-Z.3    Cui, Q.4
  • 18
    • 79953204649 scopus 로고    scopus 로고
    • Development and application of a method for counterselectable in-frame deletion in Clostridium perfringens
    • 1:CAS:528:DC%2BC3MXhtVeju7vK
    • Nariya H, Miyata S, Suzuki M, Tamai E, Okabe A. Development and application of a method for counterselectable in-frame deletion in Clostridium perfringens. Appl Environ Microbiol. 2011;77:1375-82.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 1375-1382
    • Nariya, H.1    Miyata, S.2    Suzuki, M.3    Tamai, E.4    Okabe, A.5
  • 20
    • 84876863362 scopus 로고    scopus 로고
    • Metabolic engineering of Clostridium acetobutylicum ATCC 824 for the high-yield production of a biofuel composed of an isopropanol/butanol/ethanol mixture
    • Dusséaux S, Croux C, Soucaille P, Meynial-Salles I. Metabolic engineering of Clostridium acetobutylicum ATCC 824 for the high-yield production of a biofuel composed of an isopropanol/butanol/ethanol mixture. Metab Eng. 2013;18:1-8.
    • (2013) Metab Eng , vol.18 , pp. 1-8
    • Dusséaux, S.1    Croux, C.2    Soucaille, P.3    Meynial-Salles, I.4
  • 21
    • 84863792386 scopus 로고    scopus 로고
    • Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production
    • 1:CAS:528:DC%2BC38XptFemt7o%3D
    • Cartman ST, Kelly ML, Heeg D, Heap JT, Minton NP. Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production. Appl Environ Microbiol. 2012;78(13):4683-90.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.13 , pp. 4683-4690
    • Cartman, S.T.1    Kelly, M.L.2    Heeg, D.3    Heap, J.T.4    Minton, N.P.5
  • 22
    • 84868649467 scopus 로고    scopus 로고
    • Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration
    • Al-Hinai MA, Fast AG, Papoutsakis ET. Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration. Appl Environ Microbiol. 2014;78:8112-21.
    • (2014) Appl Environ Microbiol , vol.78 , pp. 8112-8121
    • Al-Hinai, M.A.1    Fast, A.G.2    Papoutsakis, E.T.3
  • 24
    • 84860362257 scopus 로고    scopus 로고
    • Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker
    • 1:CAS:528:DC%2BC38Xmt12jsLc%3D
    • Heap JT, Ehsaan M, Cooksley CM, Ng YK, Cartman ST, Winzer K, Minton NP. Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker. Nucl Acids Res. 2012;0(8):e59.
    • (2012) Nucl Acids Res , Issue.8 , pp. e59
    • Heap, J.T.1    Ehsaan, M.2    Cooksley, C.M.3    Ng, Y.K.4    Cartman, S.T.5    Winzer, K.6    Minton, N.P.7
  • 25
    • 84873529552 scopus 로고    scopus 로고
    • Expanding the repertoire of gene tools for precise manipulation of the Clostridium difficile genome: Allelic exchange using pyrE alleles
    • 1:CAS:528:DC%2BC3sXivFKjtrw%3D
    • Ng YK, Ehsaan M, Philip S, Collery MM, Janoir C, Collignon A, Cartman ST, Minton NP. Expanding the repertoire of gene tools for precise manipulation of the Clostridium difficile genome: allelic exchange using pyrE alleles. PLoS One. 2013;8:e56051.
    • (2013) PLoS One , vol.8 , pp. e56051
    • Ng, Y.K.1    Ehsaan, M.2    Philip, S.3    Collery, M.M.4    Janoir, C.5    Collignon, A.6    Cartman, S.T.7    Minton, N.P.8
  • 26
    • 0019810772 scopus 로고
    • Isolation and Partial Characterization of 3 Cryptic Plasmids from Strains of Clostridium-Butyricum
    • 1:CAS:528:DyaL38XitFWlt7Y%3D
    • Minton N, Morris JG. Isolation and Partial Characterization of 3 Cryptic Plasmids from Strains of Clostridium-Butyricum. J Gen Microbiol. 1981;127:325-31.
    • (1981) J Gen Microbiol , vol.127 , pp. 325-331
    • Minton, N.1    Morris, J.G.2
  • 27
    • 0022259330 scopus 로고
    • Worldwide distribution of the conjugative Clostridium perfringens tetracycline resistance plasmid, pCW3
    • 1:CAS:528:DyaL2MXlsFCqtrk%3D
    • Abraham LJ, Wales AJ, Rood JI. Worldwide distribution of the conjugative Clostridium perfringens tetracycline resistance plasmid, pCW3. Plasmid. 1985;14:37-46.
    • (1985) Plasmid , vol.14 , pp. 37-46
    • Abraham, L.J.1    Wales, A.J.2    Rood, J.I.3
  • 29
    • 0038387494 scopus 로고    scopus 로고
    • 5-Fluorouracil: Mechanisms of action and clinical strategies
    • Longley DB, Harkin DP, Johnston PG. 5-Fluorouracil: mechanisms of action and clinical strategies. Nat Rev Cancer. 2003;2003(3):330-8.
    • (2003) Nat Rev Cancer , vol.2003 , Issue.3 , pp. 330-338
    • Longley, D.B.1    Harkin, D.P.2    Johnston, P.G.3
  • 32
    • 77949404995 scopus 로고    scopus 로고
    • Engineering Clostridium strain to accept unmethylated DNA
    • Dong H, Zhang Y, Dai Z, Li Y. Engineering Clostridium strain to accept unmethylated DNA. PLoS One. 2010;5(2):e9038.
    • (2010) PLoS One , vol.5 , Issue.2 , pp. e9038
    • Dong, H.1    Zhang, Y.2    Dai, Z.3    Li, Y.4
  • 34
    • 0037161217 scopus 로고    scopus 로고
    • AmyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DC%2BD38XjvVeht78%3D
    • Sabathe F, Croux C, Cornillot E, Soucaille P. amyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824. FEMS Microbiol Lett. 2002;210(1):93-8.
    • (2002) FEMS Microbiol Lett , vol.210 , Issue.1 , pp. 93-98
    • Sabathe, F.1    Croux, C.2    Cornillot, E.3    Soucaille, P.4
  • 35
    • 26444483354 scopus 로고    scopus 로고
    • Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum
    • 1:CAS:528:DC%2BD2MXhtFantb3J
    • Alsaker KV, Papoutsakis ET. Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J Bacteriol. 2005;187:7103-18.
    • (2005) J Bacteriol , vol.187 , pp. 7103-7118
    • Alsaker, K.V.1    Papoutsakis, E.T.2
  • 36
    • 84857087282 scopus 로고    scopus 로고
    • An agr quorum sensing system that regulates granulose formation and sporulation in Clostridium acetobutylicum
    • 1:CAS:528:DC%2BC38XitVKrur0%3D
    • Steiner EJ, Scott JC, Minton NP, Winzer K. An agr quorum sensing system that regulates granulose formation and sporulation in Clostridium acetobutylicum. Appl Environ Microbiol. 2012;78(4):1113-22.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.4 , pp. 1113-1122
    • Steiner, E.J.1    Scott, J.C.2    Minton, N.P.3    Winzer, K.4
  • 37
    • 84926619433 scopus 로고    scopus 로고
    • A universal mariner transposon system for forward genetic studies in the genus Clostridium
    • Zhang Y, Grosse-Honebrink A, Minton NP. A universal mariner transposon system for forward genetic studies in the genus Clostridium. PLoS One. 2015;2;10(4):e0122411.
    • (2015) PLoS One , vol.2-10 , Issue.4 , pp. e0122411
    • Zhang, Y.1    Grosse-Honebrink, A.2    Minton, N.P.3
  • 38
    • 84883568981 scopus 로고    scopus 로고
    • Secretion and assembly of functional mini-cellulosomes from synthetic chromosomal operons in Clostridium acetobutylicum ATCC 824
    • Kovács K, Willson BJ, Schwarz K, Heap JT, Jackson A, Bolam DN, Winzer K, Minton NP. Secretion and assembly of functional mini-cellulosomes from synthetic chromosomal operons in Clostridium acetobutylicum ATCC 824. Biotechnol Biofuels. 2013;6(1):117.
    • (2013) Biotechnol Biofuels , vol.6 , Issue.1 , pp. 117
    • Kovács, K.1    Willson, B.J.2    Schwarz, K.3    Heap, J.T.4    Jackson, A.5    Bolam, D.N.6    Winzer, K.7    Minton, N.P.8
  • 39
    • 84928554535 scopus 로고    scopus 로고
    • The potential of clostridial spores as therapeutic delivery vehicles in tumour therapy
    • 1:CAS:528:DC%2BC2MXovFyntQ%3D%3D
    • Kubiak AM, Minton NP. The potential of clostridial spores as therapeutic delivery vehicles in tumour therapy. Res Microbiol. 2015;166(4):244-54.
    • (2015) Res Microbiol , vol.166 , Issue.4 , pp. 244-254
    • Kubiak, A.M.1    Minton, N.P.2
  • 40
    • 80052516578 scopus 로고    scopus 로고
    • Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture
    • 1:CAS:528:DC%2BC3MXhtFKnsbfK
    • Bao G, Wang R, Zhu Y, Dong H, Mao S, Zhang Y, Chen Z, Li Y, Ma Y. Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture. J Bacteriol. 2011;193(18):5007-8.
    • (2011) J Bacteriol , vol.193 , Issue.18 , pp. 5007-5008
    • Bao, G.1    Wang, R.2    Zhu, Y.3    Dong, H.4    Mao, S.5    Zhang, Y.6    Chen, Z.7    Li, Y.8    Ma, Y.9
  • 41
    • 0034606690 scopus 로고    scopus 로고
    • Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: Need for new phenomenological models for solventogenesis and butanol inhibition?
    • 1:CAS:528:DC%2BD3cXltlaj
    • Harris LM, Desai RP, Welker NE, Papoutsakis ET. Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: need for new phenomenological models for solventogenesis and butanol inhibition? Biotechnol Bioeng. 2000;67(1):1-11.
    • (2000) Biotechnol Bioeng , vol.67 , Issue.1 , pp. 1-11
    • Harris, L.M.1    Desai, R.P.2    Welker, N.E.3    Papoutsakis, E.T.4
  • 42
    • 0015155688 scopus 로고
    • Oxygen and growth and metabolism of Clostridium-acetobutylicum
    • 1:CAS:528:DyaE38Xps1Oktw%3D%3D
    • Obrien RW, Morris JG. Oxygen and growth and metabolism of Clostridium-acetobutylicum. J Gen Microbiol. 1971;68:307-18.
    • (1971) J Gen Microbiol , vol.68 , pp. 307-318
    • Obrien, R.W.1    Morris, J.G.2
  • 43
    • 0021261020 scopus 로고
    • Intermediary metabolism in Clostridium acetobutylicum - Levels of enzymes involved in the formation of acetate and butyrate
    • 1:CAS:528:DyaL2cXksFWnuro%3D
    • Hartmanis MGN, Gatenbeck S. Intermediary metabolism in Clostridium acetobutylicum - levels of enzymes involved in the formation of acetate and butyrate. Appl Environ Microbiol. 1984;47(6):1277-83.
    • (1984) Appl Environ Microbiol , vol.47 , Issue.6 , pp. 1277-1283
    • Hartmanis, M.G.N.1    Gatenbeck, S.2
  • 44
    • 80053242017 scopus 로고    scopus 로고
    • Molecular cloning: A laboratory manual
    • Sambrook J, Russell D. Molecular cloning: a laboratory manual. CSHL Press. 2001.
    • (2001) CSHL Press
    • Sambrook, J.1    Russell, D.2
  • 45
    • 0024556150 scopus 로고
    • Engineering hybrid genes without the use of restriction enzymes: Gene splicing by overlap extension
    • 1:CAS:528:DyaL1MXktVais7k%3D
    • Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR. Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene. 1989;77(1):61-8.
    • (1989) Gene , vol.77 , Issue.1 , pp. 61-68
    • Horton, R.M.1    Hunt, H.D.2    Ho, S.N.3    Pullen, J.K.4    Pease, L.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.