메뉴 건너뛰기




Volumn 76, Issue 19, 2010, Pages 6591-6599

Development of pyrF-Based genetic system for targeted gene deletion in clostridium thermocellum and creation of a pta mutant

Author keywords

[No Author keywords available]

Indexed keywords

ACID PRODUCTION; CLOSTRIDIUM THERMOCELLUM; ECTOPIC EXPRESSIONS; GENE DELETION; GENE KNOCKOUT; GENETIC SELECTION; GENETIC SYSTEMS; HOMOLOGOUS RECOMBINATION; METABOLIC ENGINEERING; NEGATIVE SELECTION; PHOSPHOTRANSACETYLASE; SUSTAINABLE ENERGY; THERMOPHILIC ANAEROBIC BACTERIA;

EID: 78049278436     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01484-10     Document Type: Article
Times cited : (176)

References (43)
  • 1
    • 0028945951 scopus 로고
    • Virulence studies on chromosomal alpha-toxin and theta-toxin mutants constructed by allelic exchange provide genetic evidence for the essential role of alpha-toxin in Clostridium perfringens-mediated gas gangrene
    • Awad, M. M., A. E. Bryant, D. L. Stevens, and J. I. Rood. 1995. Virulence studies on chromosomal alpha-toxin and theta-toxin mutants constructed by allelic exchange provide genetic evidence for the essential role of alpha-toxin in Clostridium perfringens-mediated gas gangrene. Mol. Microbiol. 15:191-202.
    • (1995) Mol. Microbiol. , vol.15 , pp. 191-202
    • Awad, M.M.1    Bryant, A.E.2    Stevens, D.L.3    Rood, I.J.4
  • 2
    • 4143139469 scopus 로고    scopus 로고
    • The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides
    • Bayer, E. A., J.-P. Belaich, Y. Shoham, and R. Lamed. 2004. The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. Annu. Rev. Microbiol. 58:521-554.
    • (2004) Annu. Rev. Microbiol. , vol.58 , pp. 521-554
    • Bayer, E.A.1    Belaich, J.-P.2    Shoham, Y.3    Lamed, R.4
  • 3
    • 0021855251 scopus 로고
    • Organization and distribution of the cellulosome in Clostridium thermocellum
    • Bayer, E. A., E. Setter, and R. Lamed. 1985. Organization and distribution of the cellulosome in Clostridium thermocellum. J. Bacteriol. 163:552-559.
    • (1985) J. Bacteriol. , vol.163 , pp. 552-559
    • Bayer, E.A.1    Setter, E.2    Lamed, R.3
  • 4
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • Boeke, J. D., F. Croute, and G. R. Fink. 1984. A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet. 197:345-346.
    • (1984) Mol. Gen. Genet. , vol.197 , pp. 345-346
    • Boeke, J.D.1    Croute, F.2    Fink, R.G.3
  • 5
    • 0032721968 scopus 로고    scopus 로고
    • Acetate metabolism in a pta mutant of Escherichia coli W3110: Importance of maintaining acetyl coenzyme A flux for growth and survival
    • Chang, D.-E., S. Shin, J.-S. Rhee, and J.-G. Pan. 1999. Acetate metabolism in a pta mutant of Escherichia coli W3110: importance of maintaining acetyl coenzyme A flux for growth and survival. J. Bacteriol. 181:6656-6663.
    • (1999) J. Bacteriol. , vol.181 , pp. 6656-6663
    • Chang, D.-E.1    Shin, S.2    Rhee, J.-S.3    Pan, J.-G.4
  • 7
    • 0035128694 scopus 로고    scopus 로고
    • Precursor balancing for metabolic engineering of lycopene production in Escherichia coli
    • Farmer, W. R., and J. C. Liao. 2001. Precursor balancing for metabolic engineering of lycopene production in Escherichia coli. Biotechnol. Prog. 17:57-61.
    • (2001) Biotechnol. Prog. , vol.17 , pp. 57-61
    • Farmer, W.R.1    Liao, J.C.2
  • 9
    • 34948817185 scopus 로고    scopus 로고
    • Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis
    • Gold, N. D., and V. J. J. Martin. 2007. Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis. J. Bacteriol. 189:6787-6795.
    • (2007) J. Bacteriol. , vol.189 , pp. 6787-6795
    • Gold, N.D.1    Martin, V.J.J.2
  • 10
    • 0029846031 scopus 로고    scopus 로고
    • Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824
    • Green, E. M., Z. L. Boynton, L. M. Harris, F. B. Rudolph, E. T. Papoutsakis, and G. N. Bennett. 1996. Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824. Microbiology 142:2079-2086.
    • (1996) Microbiology , vol.142 , pp. 2079-2086
    • Green, E.M.1    Boynton, Z.L.2    Harris, L.M.3    Rudolph, F.B.4    Papoutsakis, E.T.5    Bennett, G.N.6
  • 11
    • 0025326759 scopus 로고
    • Development of an integrative DNA transformation system for the yeast Candida tropicalis
    • Haas, L. O., J. M. Cregg, and M. A. Gleeson. 1990. Development of an integrative DNA transformation system for the yeast Candida tropicalis. J. Bacteriol. 172:4571-4577.
    • (1990) J. Bacteriol. , vol.172 , pp. 4571-4577
    • Haas, L.O.1    Cregg, J.M.2    Gleeson, M.A.3
  • 12
    • 37349093415 scopus 로고    scopus 로고
    • Engineered synthetic pathway for isopropanol production in Escherichia coli
    • Hanai, T., S. Atsumi, and J. C. Liao. 2007. Engineered synthetic pathway for isopropanol production in Escherichia coli. Appl. Environ. Microbiol. 73: 7814-7818.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7814-7818
    • Hanai, T.1    Atsumi, S.2    Liao, J.C.3
  • 13
    • 0036282456 scopus 로고    scopus 로고
    • Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824
    • Harris, L. M., N. E. Welker, and E. T. Papoutsakis. 2002. Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824. J. Bacteriol. 184:3586-3597.
    • (2002) J. Bacteriol. , vol.184 , pp. 3586-3597
    • Harris, L.M.1    Welker, N.E.2    Papoutsakis, E.T.3
  • 17
    • 0019503894 scopus 로고
    • Chemically defined minimal medium for growth of the anaerobic cellulolytic thermophile Clostridium thermocellum
    • Johnson, E. A., A. Madia, and A. L. Demain. 1981. Chemically defined minimal medium for growth of the anaerobic cellulolytic thermophile Clostridium thermocellum. Appl. Environ. Microbiol. 41:1060-1062.
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 1060-1062
    • Johnson, E.A.1    Madia, A.2    Demain, A.L.3
  • 18
    • 0028675013 scopus 로고
    • Construction of Pta-Ack pathway deletion mutants of Escherichia coli and characteristic growth profiles of the mutants in a rich medium
    • Kakuda, H., K. Shiroishi, K. Hosono, and S. Ichihara. 1994. Construction of Pta-Ack pathway deletion mutants of Escherichia coli and characteristic growth profiles of the mutants in a rich medium. Biosci. Biotechnol. Biochem. 58:2232-2235.
    • (1994) Biosci. Biotechnol. Biochem. , vol.58 , pp. 2232-2235
    • Kakuda, H.1    Shiroishi, K.2    Hosono, K.3    Ichihara, S.4
  • 20
    • 0025788345 scopus 로고
    • Positive selection for uracilauxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acid
    • Kondo, S., A. Yamagishi, and T. Oshima. 1991. Positive selection for uracilauxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acid. J. Bacteriol. 173:7698-7700.
    • (1991) J. Bacteriol. , vol.173 , pp. 7698-7700
    • Kondo, S.1    Yamagishi, A.2    Oshima, T.3
  • 21
    • 15344340751 scopus 로고    scopus 로고
    • Metabolic engineering of aerobic succinate production systems in Escherichia coli to improve process productivity and achieve the maximum theoretical succinate yield
    • Lin, H., G. N. Bennett, and K.-Y. San. 2005. Metabolic engineering of aerobic succinate production systems in Escherichia coli to improve process productivity and achieve the maximum theoretical succinate yield. Metab. Eng. 7:116-127.
    • (2005) Metab. Eng. , vol.7 , pp. 116-127
    • Lin, H.1    Bennett, G.N.2    San, K.-Y.3
  • 25
    • 0028036558 scopus 로고
    • Engineering of Escherichia coli central metabolism for aromatic metabolite production with near theoretical yield
    • Patnaik, R., and J. C. Liao. 1994. Engineering of Escherichia coli central metabolism for aromatic metabolite production with near theoretical yield. Appl. Environ. Microbiol. 60:3903-3908.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3903-3908
    • Patnaik, R.1    Liao, J.C.2
  • 26
    • 0022531790 scopus 로고
    • Clostridium thermosaccharolyticum strain deficient in acetate production
    • Rothstein, D. M. 1986. Clostridium thermosaccharolyticum strain deficient in acetate production. J. Bacteriol. 165:319-320.
    • (1986) J. Bacteriol. , vol.165 , pp. 319-320
    • Rothstein, D.M.1
  • 27
    • 22144443201 scopus 로고    scopus 로고
    • Improved and versatiletransformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis
    • Sato, T., T. Fukui, H. Atomi, and T. Imanaka. 2005. Improved and versatiletransformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis. Appl. Environ. Microbiol. 71:3889-3899.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3889-3899
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 28
    • 0037215528 scopus 로고    scopus 로고
    • Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • Sato, T., T. Fukui, H. Atomi, and T. Imanaka. 2003. Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J. Bacteriol. 185:210-220.
    • (2003) J. Bacteriol. , vol.185 , pp. 210-220
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 29
    • 16344374397 scopus 로고    scopus 로고
    • Auxotrophic markers pyrF and proC can replace antibiotic markers on protein production plasmids in high-cell-density Pseudomonas fluorescens fermentation
    • Schneider, J. C., A. F. Jenings, D. M. Mun, P. M. McGovern, and L. C. Chew. 2005. Auxotrophic markers pyrF and proC can replace antibiotic markers on protein production plasmids in high-cell-density Pseudomonas fluorescens fermentation. Biotechnol. Prog. 21:343-348.
    • (2005) Biotechnol. Prog. , vol.21 , pp. 343-348
    • Schneider, J.C.1    Jenings, A.F.2    Mun, D.M.3    McGovern, P.M.4    Chew, L.C.5
  • 30
    • 33746045692 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria
    • Shanks, R. M. Q., N. C. Caiazza, S. M. Hinsa, C. M. Toutain, and G. A. O'Toole. 2006. Saccharomyces cerevisiae-based molecular tool kit for manipulation of genes from gram-negative bacteria. Appl. Environ. Microbiol. 72:5027-5036.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5027-5036
    • Shanks, R.M.Q.1    Caiazza, N.C.2    Hinsa, S.M.3    Toutain, C.M.4    O'Toole, G.A.5
  • 31
    • 70350455960 scopus 로고    scopus 로고
    • Identification of the [FeFe]-hydrogenase responsible for hydrogen generation in Thermoanaerobacterium saccharolyticum and demonstration of increased ethanol yieldvia hydrogenase knockout
    • Shaw, A. J., D. A. Hogsett, and L. R. Lynd. 2009. Identification of the [FeFe]-hydrogenase responsible for hydrogen generation in Thermoanaerobacterium saccharolyticum and demonstration of increased ethanol yieldvia hydrogenase knockout. J. Bacteriol. 191:6457-6464.
    • (2009) J. Bacteriol. , vol.191 , pp. 6457-6464
    • Shaw, A.J.1    Hogsett, D.A.2    Lynd, L.R.3
  • 33
    • 0023424147 scopus 로고
    • Thermostability and superhelicity of plasmid DNA in Bacillus stearothermophilus
    • Soutschek-Bauer, E., W. Scholz, E. Grill, and W. L. Staudenbauer. 1987. Thermostability and superhelicity of plasmid DNA in Bacillus stearothermophilus. Mol. Gen. Genet. 209:575-579.
    • (1987) Mol. Gen. Genet. , vol.209 , pp. 575-579
    • Soutschek-Bauer, E.1    Scholz, W.2    Grill, E.3    Staudenbauer, W.L.4
  • 34
    • 72049109957 scopus 로고    scopus 로고
    • Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367
    • Tolonen, A. C., A. C. Chilaka, and G. M. Church. 2009. Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367. Mol. Microbiol. 74:1300-1313.
    • (2009) Mol. Microbiol. , vol.74 , pp. 1300-1313
    • Tolonen, A.C.1    Chilaka, A.C.2    Church, G.M.3
  • 35
    • 70350517579 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for efficient conversion of glycerol to ethanol
    • Trinh, C. T., and F. Srienc. 2009. Metabolic engineering of Escherichia coli for efficient conversion of glycerol to ethanol. Appl. Environ. Microbiol. 75:6696-6705.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 6696-6705
    • Trinh, C.T.1    Srienc, F.2
  • 36
    • 45749137679 scopus 로고    scopus 로고
    • Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses
    • Trinh, C. T., P. Unrean, and F. Srienc. 2008. Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses. Appl. Environ. Microbiol. 74:3634-3643.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 3634-3643
    • Trinh, C.T.1    Unrean, P.2    Srienc, F.3
  • 37
  • 38
    • 29144524921 scopus 로고    scopus 로고
    • Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes
    • Tyurin, M. V., C. R. Sullivan, and L. R. Lynd. 2005. Role of spontaneous current oscillations during high-efficiency electrotransformation of thermophilic anaerobes. Appl. Environ. Microbiol. 71:8069-8076.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8069-8076
    • Tyurin, M.V.1    Sullivan, C.R.2    Lynd, L.R.3
  • 39
    • 0030001222 scopus 로고    scopus 로고
    • Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus
    • Yamagishi, A., T. Tanimoto, T. Suzuki, and T. Oshima. 1996. Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus. Appl. Environ. Microbiol. 62:2191-2194.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2191-2194
    • Yamagishi, A.1    Tanimoto, T.2    Suzuki, T.3    Oshima, T.4
  • 40
    • 0033527823 scopus 로고    scopus 로고
    • Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli
    • Yang, Y.-T., G. N. Bennett, and K.-Y. San. 1999. Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli. Biotechnol. Bioeng. 65:291-297.
    • (1999) Biotechnol. Bioeng. , vol.65 , pp. 291-297
    • Yang, Y.-T.1    Bennett, G.N.2    San, K.-Y.3
  • 41
    • 18844371475 scopus 로고    scopus 로고
    • Cellulose utilization by Clostridium thermocellum: Bioenergetics and hydrolysis product assimilation
    • Zhang, Y.-H. P., and L. R. Lynd. 2005. Cellulose utilization by Clostridium thermocellum: bioenergetics and hydrolysis product assimilation. Proc. Natl. Acad. Sci. U. S. A. 102:7321-7325.
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 7321-7325
    • Zhang, Y.-H.P.1    Lynd, L.R.2
  • 42
    • 33845649466 scopus 로고    scopus 로고
    • Enhancement of riboflavin production by overexpression of acetolactate synthase in a pta mutant of Bacillus subtilis
    • Zhu, Y., X. Chen, T. Chen, and X. Zhao. 2007. Enhancement of riboflavin production by overexpression of acetolactate synthase in a pta mutant of Bacillus subtilis. FEMS Microbiol. Lett. 266:224-230.
    • (2007) FEMS Microbiol. Lett. , vol.266 , pp. 224-230
    • Zhu, Y.1    Chen, X.2    Chen, T.3    Zhao, X.4
  • 43
    • 44949173182 scopus 로고    scopus 로고
    • Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: Insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose
    • Zverlov, V. V., M. Klupp, J. Krauss, and W. H. Schwarz. 2008. Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose. J. Bacteriol. 190:4321-4327.
    • (2008) J. Bacteriol. , vol.190 , pp. 4321-4327
    • Zverlov, V.V.M.1    Klupp, M.2    Krauss, J.3    Schwarz, W.H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.