메뉴 건너뛰기




Volumn 9, Issue 12, 2015, Pages 11924-11932

Single-Cell Quantification of Cytosine Modifications by Hyperspectral Dark-Field Imaging

Author keywords

cytosine modification; epigenetics; hyperspectral dark field microscopy; plasmonic nanoprobes; quantitative imaging

Indexed keywords

CHROMOSOMES; CYTOLOGY; GENE EXPRESSION; GENE EXPRESSION REGULATION; GOLD; NANOPROBES; PLASMONS; SILVER; SPECTROSCOPY; SURFACE PLASMON RESONANCE;

EID: 84952333245     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/acsnano.5b04451     Document Type: Article
Times cited : (54)

References (43)
  • 1
    • 2642531973 scopus 로고    scopus 로고
    • Epigenetics in Human Disease and Prospects for Epigenetic Therapy
    • Egger, G.; Liang, G.; Aparicio, A.; Jones, P. A. Epigenetics in Human Disease and Prospects for Epigenetic Therapy Nature 2004, 429, 457-463 10.1038/nature02625
    • (2004) Nature , vol.429 , pp. 457-463
    • Egger, G.1    Liang, G.2    Aparicio, A.3    Jones, P.A.4
  • 2
    • 33845211776 scopus 로고    scopus 로고
    • Epigenetic Aberrations and Cancer
    • Ducasse, M.; Brown, M. A. Epigenetic Aberrations and Cancer Mol. Cancer 2006, 5, 60 10.1186/1476-4598-5-60
    • (2006) Mol. Cancer , vol.5 , pp. 60
    • Ducasse, M.1    Brown, M.A.2
  • 3
    • 84863770814 scopus 로고    scopus 로고
    • Cancer Genetics and Epigenetics: Two Sides of the Same Coin?
    • You, J. S.; Jones, P. A. Cancer Genetics and Epigenetics: Two Sides of the Same Coin? Cancer Cell 2012, 22, 9-20 10.1016/j.ccr.2012.06.008
    • (2012) Cancer Cell , vol.22 , pp. 9-20
    • You, J.S.1    Jones, P.A.2
  • 4
    • 22844457491 scopus 로고    scopus 로고
    • DNA Methylation and Human Disease
    • Robertson, K. D. DNA Methylation and Human Disease Nat. Rev. Genet. 2005, 6, 597-610 10.1038/nrg1655
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 597-610
    • Robertson, K.D.1
  • 5
    • 84874194072 scopus 로고    scopus 로고
    • DNA Methylation: Roles in Mammalian Development
    • Smith, Z. D.; Meissner, A. DNA Methylation: Roles in Mammalian Development Nat. Rev. Genet. 2013, 14, 204-220 10.1038/nrg3354
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 204-220
    • Smith, Z.D.1    Meissner, A.2
  • 7
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet Proteins in 5mC to 5hmC Conversion, ES-Cell Self-Renewal and Inner Cell Mass Specification
    • Ito, S.; D'Alessio, A. C.; Taranova, O. V.; Hong, K.; Sowers, L. C.; Zhang, Y. Role of Tet Proteins in 5mC to 5hmC Conversion, ES-Cell Self-Renewal and Inner Cell Mass Specification Nature 2010, 466, 1129-1133 10.1038/nature09303
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 8
    • 80052461558 scopus 로고    scopus 로고
    • Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
    • Ito, S.; Shen, L.; Dai, Q.; Wu, S. C.; Collins, L. B.; Swenberg, J. A.; He, C.; Zhang, Y. Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine Science 2011, 333, 1300-1303 10.1126/science.1210597
    • (2011) Science , vol.333 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3    Wu, S.C.4    Collins, L.B.5    Swenberg, J.A.6    He, C.7    Zhang, Y.8
  • 10
    • 79955499751 scopus 로고    scopus 로고
    • Enzymatic Labeling of 5-Hydroxymethylcytosine in DNA
    • Hobartner, C. Enzymatic Labeling of 5-Hydroxymethylcytosine in DNA Angew. Chem., Int. Ed. 2011, 50, 4268-4270 10.1002/anie.201100350
    • (2011) Angew. Chem., Int. Ed. , vol.50 , pp. 4268-4270
    • Hobartner, C.1
  • 11
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
    • Booth, M. J.; Branco, M. R.; Ficz, G.; Oxley, D.; Krueger, F.; Reik, W.; Balasubramanian, S. Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution Science 2012, 336, 934-937 10.1126/science.1220671
    • (2012) Science , vol.336 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3    Oxley, D.4    Krueger, F.5    Reik, W.6    Balasubramanian, S.7
  • 13
    • 79960273984 scopus 로고    scopus 로고
    • Characterization of PvuRts1I Endonuclease as a Tool to Investigate Genomic 5-Hydroxymethylcytosine
    • Szwagierczak, A.; Brachmann, A.; Schmidt, C. S.; Bultmann, S.; Leonhardt, H.; Spada, F. Characterization of PvuRts1I Endonuclease as a Tool to Investigate Genomic 5-Hydroxymethylcytosine Nucleic Acids Res. 2011, 39, 5149-5156 10.1093/nar/gkr118
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5149-5156
    • Szwagierczak, A.1    Brachmann, A.2    Schmidt, C.S.3    Bultmann, S.4    Leonhardt, H.5    Spada, F.6
  • 14
    • 84869392308 scopus 로고    scopus 로고
    • Mapping Recently Identified Nucleotide Variants in the Genome and Transcriptome
    • Song, C. X.; Yi, C.; He, C. Mapping Recently Identified Nucleotide Variants in the Genome and Transcriptome Nat. Biotechnol. 2012, 30, 1107-1116 10.1038/nbt.2398
    • (2012) Nat. Biotechnol. , vol.30 , pp. 1107-1116
    • Song, C.X.1    Yi, C.2    He, C.3
  • 15
    • 67650762824 scopus 로고    scopus 로고
    • Super-Resolution Fluorescence Microscopy
    • Huang, B.; Bates, M.; Zhuang, X. Super-Resolution Fluorescence Microscopy Annu. Rev. Biochem. 2009, 78, 993-1016 10.1146/annurev.biochem.77.061906.092014
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 993-1016
    • Huang, B.1    Bates, M.2    Zhuang, X.3
  • 16
    • 84897586091 scopus 로고    scopus 로고
    • Medical Hyperspectral Imaging: a Review
    • Lu, G.; Fei, B. Medical Hyperspectral Imaging: a Review J. Biomed. Opt. 2014, 19, 10901 10.1117/1.JBO.19.1.010901
    • (2014) J. Biomed. Opt. , vol.19 , pp. 10901
    • Lu, G.1    Fei, B.2
  • 17
    • 80052601905 scopus 로고    scopus 로고
    • Multicolored Nanometre-Resolution Mapping of Single Protein-Ligand Binding Complexes Using Far-Field Photostable Optical Nanoscopy (PHOTON)
    • Huang, T.; Xu, X.-H. N. Multicolored Nanometre-Resolution Mapping of Single Protein-Ligand Binding Complexes Using Far-Field Photostable Optical Nanoscopy (PHOTON) Nanoscale 2011, 3, 3567-3572 10.1039/c1nr10182j
    • (2011) Nanoscale , vol.3 , pp. 3567-3572
    • Huang, T.1    Xu, X.-H.N.2
  • 18
    • 84902299508 scopus 로고    scopus 로고
    • Quantitative Imaging of Single mRNA Splice Variants in Living Cells
    • Lee, K.; Cui, Y.; Lee, L. P.; Irudayaraj, J. Quantitative Imaging of Single mRNA Splice Variants in Living Cells Nat. Nanotechnol. 2014, 9, 474-480 10.1038/nnano.2014.73
    • (2014) Nat. Nanotechnol. , vol.9 , pp. 474-480
    • Lee, K.1    Cui, Y.2    Lee, L.P.3    Irudayaraj, J.4
  • 19
    • 79960248066 scopus 로고    scopus 로고
    • Single Gold Nanoparticles as Real-Time Optical Probes for the Detection of NADH-Dependent Intracellular Metabolic Enzymatic Pathways
    • Zhang, L.; Li, Y.; Li, D. W.; Jing, C.; Chen, X.; Lv, M.; Huang, Q.; Long, Y. T.; Willner, I. Single Gold Nanoparticles as Real-Time Optical Probes for the Detection of NADH-Dependent Intracellular Metabolic Enzymatic Pathways Angew. Chem., Int. Ed. 2011, 50, 6789-6792 10.1002/anie.201102151
    • (2011) Angew. Chem., Int. Ed. , vol.50 , pp. 6789-6792
    • Zhang, L.1    Li, Y.2    Li, D.W.3    Jing, C.4    Chen, X.5    Lv, M.6    Huang, Q.7    Long, Y.T.8    Willner, I.9
  • 21
    • 79952940086 scopus 로고    scopus 로고
    • DNA-Gold Nanoparticle Reversible Networks Grown on Cell Surface Marker Sites: Application in Diagnostics
    • Lee, K.; Drachev, V. P.; Irudayaraj, J. DNA-Gold Nanoparticle Reversible Networks Grown on Cell Surface Marker Sites: Application in Diagnostics ACS Nano 2011, 5, 2109-2117 10.1021/nn1030862
    • (2011) ACS Nano , vol.5 , pp. 2109-2117
    • Lee, K.1    Drachev, V.P.2    Irudayaraj, J.3
  • 22
    • 84935027764 scopus 로고    scopus 로고
    • Enabling Rapid and Specific Surface-Enhanced Raman Scattering Immunoassay Using Nanoscaled Surface Shear Forces
    • Wang, Y.; Vaidyanathan, R.; Shiddiky, M. J.; Trau, M. Enabling Rapid and Specific Surface-Enhanced Raman Scattering Immunoassay Using Nanoscaled Surface Shear Forces ACS Nano 2015, 9, 6354-6362 10.1021/acsnano.5b01929
    • (2015) ACS Nano , vol.9 , pp. 6354-6362
    • Wang, Y.1    Vaidyanathan, R.2    Shiddiky, M.J.3    Trau, M.4
  • 23
    • 34548154064 scopus 로고    scopus 로고
    • Identity Profiling of Cell Surface Markers by Multiplex Gold Nanorod Probes
    • Yu, C.; Nakshatri, H.; Irudayaraj, J. Identity Profiling of Cell Surface Markers by Multiplex Gold Nanorod Probes Nano Lett. 2007, 7, 2300-2306 10.1021/nl070894m
    • (2007) Nano Lett. , vol.7 , pp. 2300-2306
    • Yu, C.1    Nakshatri, H.2    Irudayaraj, J.3
  • 24
    • 72249099098 scopus 로고    scopus 로고
    • Dynamic Imaging of Molecular Assemblies in Live Cells Based on Nanoparticle Plasmon Resonance Coupling
    • Aaron, J.; Travis, K.; Harrison, N.; Sokolov, K. Dynamic Imaging of Molecular Assemblies in Live Cells Based on Nanoparticle Plasmon Resonance Coupling Nano Lett. 2009, 9, 3612-3618 10.1021/nl9018275
    • (2009) Nano Lett. , vol.9 , pp. 3612-3618
    • Aaron, J.1    Travis, K.2    Harrison, N.3    Sokolov, K.4
  • 25
    • 80655137897 scopus 로고    scopus 로고
    • Monitoring of Receptor Dimerization Using Plasmonic Coupling of Gold Nanoparticles
    • Crow, M. J.; Seekell, K.; Ostrander, J. H.; Wax, A. Monitoring of Receptor Dimerization Using Plasmonic Coupling of Gold Nanoparticles ACS Nano 2011, 5, 8532-8540 10.1021/nn201451c
    • (2011) ACS Nano , vol.5 , pp. 8532-8540
    • Crow, M.J.1    Seekell, K.2    Ostrander, J.H.3    Wax, A.4
  • 26
    • 84862288397 scopus 로고    scopus 로고
    • Quantification of Differential ErbB1 and ErbB2 Cell Surface Expression and Spatial Nanoclustering through Plasmon Coupling
    • Wang, J.; Yu, X.; Boriskina, S. V.; Reinhard, B. M. Quantification of Differential ErbB1 and ErbB2 Cell Surface Expression and Spatial Nanoclustering through Plasmon Coupling Nano Lett. 2012, 12, 3231-3237 10.1021/nl3012227
    • (2012) Nano Lett. , vol.12 , pp. 3231-3237
    • Wang, J.1    Yu, X.2    Boriskina, S.V.3    Reinhard, B.M.4
  • 27
    • 84900416448 scopus 로고    scopus 로고
    • Probing Subdiffraction Limit Separations with Plasmon Coupling Microscopy: Concepts and Applications
    • Wu, L.; Reinhard, B. M. Probing Subdiffraction Limit Separations with Plasmon Coupling Microscopy: Concepts and Applications Chem. Soc. Rev. 2014, 43, 3884-3897 10.1039/c3cs60340g
    • (2014) Chem. Soc. Rev. , vol.43 , pp. 3884-3897
    • Wu, L.1    Reinhard, B.M.2
  • 28
    • 84912527399 scopus 로고    scopus 로고
    • Quantification of 5-Methylcytosine, 5-Hydroxymethylcytosine and 5-Carboxylcytosine from the Blood of Cancer Patients by An Enzyme-Based Immunoassay
    • Chowdhury, B.; Cho, I. H.; Hahn, N.; Irudayaraj, J. Quantification of 5-Methylcytosine, 5-Hydroxymethylcytosine and 5-Carboxylcytosine from the Blood of Cancer Patients by An Enzyme-Based Immunoassay Anal. Chim. Acta 2014, 852, 212-217 10.1016/j.aca.2014.09.020
    • (2014) Anal. Chim. Acta , vol.852 , pp. 212-217
    • Chowdhury, B.1    Cho, I.H.2    Hahn, N.3    Irudayaraj, J.4
  • 29
    • 84937958539 scopus 로고    scopus 로고
    • Cross-Platform Detection of Epigenetic Modifications from Extracted Chromatin in Leucocytes from Blood
    • Zhou, Z.; Cho, I. I. H.; Shan, Z.; Irudayaraj, J. Cross-Platform Detection of Epigenetic Modifications from Extracted Chromatin in Leucocytes from Blood Analytical Chemistry Research 2015, 4, 39-44 10.1016/j.ancr.2015.04.002
    • (2015) Analytical Chemistry Research , vol.4 , pp. 39-44
    • Zhou, Z.1    Cho, I.I.H.2    Shan, Z.3    Irudayaraj, J.4
  • 30
    • 34249337761 scopus 로고    scopus 로고
    • Perceptions of Epigenetics
    • Bird, A. Perceptions of Epigenetics Nature 2007, 447, 396-398 10.1038/nature05913
    • (2007) Nature , vol.447 , pp. 396-398
    • Bird, A.1
  • 31
    • 84886860116 scopus 로고    scopus 로고
    • TET Enzymes, TDG and the Dynamics of DNA Demethylation
    • Kohli, R. M.; Zhang, Y. TET Enzymes, TDG and the Dynamics of DNA Demethylation Nature 2013, 502, 472-479 10.1038/nature12750
    • (2013) Nature , vol.502 , pp. 472-479
    • Kohli, R.M.1    Zhang, Y.2
  • 32
    • 84938411464 scopus 로고    scopus 로고
    • Molecular Basis for 5-Carboxycytosine Recognition by RNA Polymerase II Elongation Complex
    • Wang, L.; Zhou, Y.; Xu, L.; Xiao, R.; Lu, X.; Chen, L.; Chong, J.; Li, H.; He, C.; Fu, X. D. et al. Molecular Basis for 5-Carboxycytosine Recognition by RNA Polymerase II Elongation Complex Nature 2015, 523, 621-625 10.1038/nature14482
    • (2015) Nature , vol.523 , pp. 621-625
    • Wang, L.1    Zhou, Y.2    Xu, L.3    Xiao, R.4    Lu, X.5    Chen, L.6    Chong, J.7    Li, H.8    He, C.9    Fu, X.D.10
  • 33
    • 84864129535 scopus 로고    scopus 로고
    • Distribution of 5-Hydroxymethylcytosine in Different Human Tissues
    • Li, W.; Liu, M. Distribution of 5-Hydroxymethylcytosine in Different Human Tissues J. Nucleic Acids 2011, 2011, 870726 10.4061/2011/870726
    • (2011) J. Nucleic Acids , vol.2011 , pp. 870726
    • Li, W.1    Liu, M.2
  • 34
    • 77249137168 scopus 로고    scopus 로고
    • Principles and Challenges of Genome-Wide DNA Methylation Analysis
    • Laird, P. W. Principles and Challenges of Genome-Wide DNA Methylation Analysis Nat. Rev. Genet. 2010, 11, 191-203 10.1038/nrg2732
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 35
    • 34249672387 scopus 로고    scopus 로고
    • Variations in DNA Methylation Patterns during the Cell Cycle of HeLa Cells
    • Brown, S. E.; Fraga, M. F.; Weaver, I. C.; Berdasco, M.; Szyf, M. Variations in DNA Methylation Patterns during the Cell Cycle of HeLa Cells Epigenetics 2007, 2, 54-65 10.4161/epi.2.1.3880
    • (2007) Epigenetics , vol.2 , pp. 54-65
    • Brown, S.E.1    Fraga, M.F.2    Weaver, I.C.3    Berdasco, M.4    Szyf, M.5
  • 37
    • 84928748974 scopus 로고    scopus 로고
    • Dissecting the Behavior and Function of MBD3 in DNA Methylation Homeostasis by Single-Molecule Spectroscopy and Microscopy
    • Cui, Y.; Irudayaraj, J. Dissecting the Behavior and Function of MBD3 in DNA Methylation Homeostasis by Single-Molecule Spectroscopy and Microscopy Nucleic Acids Res. 2015, 43, 3046-3055 10.1093/nar/gkv098
    • (2015) Nucleic Acids Res. , vol.43 , pp. 3046-3055
    • Cui, Y.1    Irudayaraj, J.2
  • 38
    • 84884912247 scopus 로고    scopus 로고
    • Real-Time Dynamics of Methyl-CpG-Binding Domain Protein 3 and Its Role in DNA Demethylation by Fluorescence Correlation Spectroscopy
    • Cui, Y.; Cho, I. H.; Chowdhury, B.; Irudayaraj, J. Real-Time Dynamics of Methyl-CpG-Binding Domain Protein 3 and Its Role in DNA Demethylation by Fluorescence Correlation Spectroscopy Epigenetics 2013, 8, 1089-1100 10.4161/epi.25958
    • (2013) Epigenetics , vol.8 , pp. 1089-1100
    • Cui, Y.1    Cho, I.H.2    Chowdhury, B.3    Irudayaraj, J.4
  • 39
    • 84919779814 scopus 로고    scopus 로고
    • Second Harmonic Super-Resolution Microscopy for Quantification of mRNA at Single Copy Sensitivity
    • Liu, J.; Cho, I. H.; Cui, Y.; Irudayaraj, J. Second Harmonic Super-Resolution Microscopy for Quantification of mRNA at Single Copy Sensitivity ACS Nano 2014, 8, 12418-12427 10.1021/nn505096t
    • (2014) ACS Nano , vol.8 , pp. 12418-12427
    • Liu, J.1    Cho, I.H.2    Cui, Y.3    Irudayaraj, J.4
  • 40
    • 67649612733 scopus 로고    scopus 로고
    • Accuracy and Precision in Quantitative Fluorescence Microscopy
    • Waters, J. C. Accuracy and Precision in Quantitative Fluorescence Microscopy J. Cell Biol. 2009, 185, 1135-1148 10.1083/jcb.200903097
    • (2009) J. Cell Biol. , vol.185 , pp. 1135-1148
    • Waters, J.C.1
  • 41
    • 84875739882 scopus 로고    scopus 로고
    • Fluorescence Lifetime Imaging of Biosensor Peptide Phosphorylation in Single Live Cells
    • Damayanti, N. P.; Parker, L. L.; Irudayaraj, J. M. Fluorescence Lifetime Imaging of Biosensor Peptide Phosphorylation in Single Live Cells Angew. Chem., Int. Ed. 2013, 52, 3931-3934 10.1002/anie.201209303
    • (2013) Angew. Chem., Int. Ed. , vol.52 , pp. 3931-3934
    • Damayanti, N.P.1    Parker, L.L.2    Irudayaraj, J.M.3
  • 42
    • 84927155061 scopus 로고    scopus 로고
    • Inside Single Cells: Quantitative Analysis with Advanced Optics and Nanomaterials
    • Cui, Y.; Irudayaraj, J. Inside Single Cells: Quantitative Analysis with Advanced Optics and Nanomaterials Wiley Interdiscip Rev. Nanomed Nanobiotechnol 2015, 7, 387-407 10.1002/wnan.1321
    • (2015) Wiley Interdiscip Rev. Nanomed Nanobiotechnol , vol.7 , pp. 387-407
    • Cui, Y.1    Irudayaraj, J.2
  • 43
    • 84869130568 scopus 로고    scopus 로고
    • Single-Molecule Tools Elucidate H2A.Z Nucleosome Composition
    • Chen, J.; Miller, A.; Kirchmaier, A. L.; Irudayaraj, J. M. Single-Molecule Tools Elucidate H2A.Z Nucleosome Composition J. Cell Sci. 2012, 125, 2954-2964 10.1242/jcs.101592
    • (2012) J. Cell Sci. , vol.125 , pp. 2954-2964
    • Chen, J.1    Miller, A.2    Kirchmaier, A.L.3    Irudayaraj, J.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.