-
1
-
-
78049485263
-
Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
-
Ferlay J, Shin H-R, Bray F, Forman D, Mathers C, Parkin DB. Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int J Cancer. 2010;127(12):2893-2917.
-
(2010)
Int J Cancer
, vol.127
, Issue.12
, pp. 2893-2917
-
-
Ferlay, J.1
Shin, H.-R.2
Bray, F.3
Forman, D.4
Mathers, C.5
Parkin, D.B.6
-
2
-
-
4944240144
-
Genetic predisposition to colorectal cancer
-
de la Chapelle A. Genetic predisposition to colorectal cancer. Nat Rev Cancer. 2004;4(10):769-780.
-
(2004)
Nat Rev Cancer
, vol.4
, Issue.10
, pp. 769-780
-
-
De La Chapelle, A.1
-
3
-
-
84866709283
-
Recent advances in understanding of interactions between genes and diet in the etiology of colorectal cancer
-
Ferguson LR. Recent advances in understanding of interactions between genes and diet in the etiology of colorectal cancer. World J Gastrointest Oncol. 2010;2(3):125-129.
-
(2010)
World J Gastrointest Oncol
, vol.2
, Issue.3
, pp. 125-129
-
-
Ferguson, L.R.1
-
4
-
-
35848936502
-
Dietary modulation of colon cancer risk
-
Kim YS, Milner JA. Dietary modulation of colon cancer risk. J Nutr. 2007;137(11 Suppl):2576S-2579S.
-
(2007)
J Nutr
, vol.137
, pp. 2576S-2579S
-
-
Kim, Y.S.1
Milner, J.A.2
-
5
-
-
0033516320
-
Colorectal cancer: Molecules and populations
-
Potter JD. Colorectal cancer: molecules and populations. J Natl Cancer Inst. 1999;91(11):916-932.
-
(1999)
J Natl Cancer Inst
, vol.91
, Issue.11
, pp. 916-932
-
-
Potter, J.D.1
-
7
-
-
49549097364
-
The second World Cancer Research Fund/American Institute for Cancer Research expert report. Food, nutrition, physical activity, and the prevention of cancer: A global perspective
-
Wiseman M. The second World Cancer Research Fund/American Institute for Cancer Research expert report. Food, nutrition, physical activity, and the prevention of cancer: a global perspective. Proc Nutr Soc. 2008;67(3):253-256.
-
(2008)
Proc Nutr Soc
, vol.67
, Issue.3
, pp. 253-256
-
-
Wiseman, M.1
-
8
-
-
85047687568
-
The role of body mass index, physical activity, and diet in colorectal cancer recurrence and survival: A review of the literature
-
Vrieling A, Kampman E. The role of body mass index, physical activity, and diet in colorectal cancer recurrence and survival: a review of the literature. Am J Clin Nutr. 2010;92(3):471-490.
-
(2010)
Am J Clin Nutr
, vol.92
, Issue.3
, pp. 471-490
-
-
Vrieling, A.1
Kampman, E.2
-
9
-
-
0036227426
-
Evolution of colorectal cancer: Change of pace and change of direction
-
Jass JR, Young J, Leggett BA. Evolution of colorectal cancer: change of pace and change of direction. J Gastroenterol Hepatol. 2002;17(1):17-26
-
(2002)
J Gastroenterol Hepatol
, vol.17
, Issue.1
, pp. 17-26
-
-
Jass, J.R.1
Young, J.2
Leggett, B.A.3
-
10
-
-
0035920153
-
Characterization of a new subfamily of winged-helix/forkhead (Fox) genes that are expressed in the lung and act as transcriptional repressors
-
Shu W, Yang H, Zhang L, Lu MM, Morrisey EE. Characterization of a new subfamily of winged-helix/forkhead (Fox) genes that are expressed in the lung and act as transcriptional repressors. J Biol Chem. 2001;276(29):27488-27497.
-
(2001)
J Biol Chem
, vol.276
, Issue.29
, pp. 27488-27497
-
-
Shu, W.1
Yang, H.2
Zhang, L.3
Lu, M.M.4
Morrisey, E.E.5
-
11
-
-
0035893741
-
The FOXP1 winged helix transcription factor is a novel candidate tumor suppressor gene on chromosome 3p
-
Banham AH, Beasley N, Campo E, et al. The FOXP1 winged helix transcription factor is a novel candidate tumor suppressor gene on chromosome 3p. Cancer Res. 2001;61(24):8820-8829
-
(2001)
Cancer Res
, vol.61
, Issue.24
, pp. 8820-8829
-
-
Banham, A.H.1
Beasley, N.2
Campo, E.3
-
12
-
-
0347986673
-
Transcriptional and DNA binding activity of the Foxp1/2/4 family is modulated by heterotypic and homotypic protein interactions
-
Li S, Weidenfeld J, Morrisey EE. Transcriptional and DNA binding activity of the Foxp1/2/4 family is modulated by heterotypic and homotypic protein interactions. Mol Cell Biol. 2004;24(2):809-822.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.2
, pp. 809-822
-
-
Li, S.1
Weidenfeld, J.2
Morrisey, E.E.3
-
13
-
-
34447295971
-
FOXP1: A potential therapeutic target in cancer
-
Koon HB, Ippolito GC, Banham AH, Tucker PW. FOXP1: a potential therapeutic target in cancer. Expert Opin Ther Targets. 2007;11(7):955-965.
-
(2007)
Expert Opin Ther Targets
, vol.11
, Issue.7
, pp. 955-965
-
-
Koon, H.B.1
Ippolito, G.C.2
Banham, A.H.3
Tucker, P.W.4
-
14
-
-
33746150775
-
Foxp1 is an essential transcriptional regulator of B cell development
-
Hu H, Wang B, Borde M, et al. Foxp1 is an essential transcriptional regulator of B cell development. Nat Immunol. 2006;7(8):819-826.
-
(2006)
Nat Immunol
, vol.7
, Issue.8
, pp. 819-826
-
-
Hu, H.1
Wang, B.2
Borde, M.3
-
15
-
-
47749149893
-
Hox repertoires for motor neuron diversity and connectivity gated by a single accessory factor FoxP1
-
Dasen JS, De Camilli A, Wang B, et al. Hox repertoires for motor neuron diversity and connectivity gated by a single accessory factor, FoxP1. Cell. 2008;134(2):304-316.
-
(2008)
Cell
, vol.134
, Issue.2
, pp. 304-316
-
-
Dasen, J.S.1
De Camilli, A.2
Wang, B.3
-
16
-
-
64149085771
-
FOXP1 expression predicts polymorphic histology and poor prognosis in gastric mucosa-associated lymphoid tissue lymphomas
-
Han SL, Wu XL, Wan L, Zeng GG, Li JL, Liu Z. FOXP1 expression predicts polymorphic histology and poor prognosis in gastric mucosa-associated lymphoid tissue lymphomas. Dig Surg. 2009;26(2):156-162.
-
(2009)
Dig Surg
, vol.26
, Issue.2
, pp. 156-162
-
-
Han, S.L.1
Wu, X.L.2
Wan, L.3
Zeng, G.G.4
Li, J.L.5
Liu, Z.6
-
17
-
-
12944273473
-
Expression of the FOXP1 transcription factor is strongly associated with inferior survival in patients with diffuse large B-cell lymphoma
-
Banham AH, Connors JM, Brown PJ, et al. Expression of the FOXP1 transcription factor is strongly associated with inferior survival in patients with diffuse large B-cell lymphoma. Clin Cancer Res. 2005;11(3):1065-1072.
-
(2005)
Clin Cancer Res
, vol.11
, Issue.3
, pp. 1065-1072
-
-
Banham, A.H.1
Connors, J.M.2
Brown, P.J.3
-
18
-
-
23744460273
-
FOXP1, a gene highly expressed in a subset of diffuse large B-cell lymphoma, is recurrently targeted by genomic aberrations
-
Wlodarska I, Veyt E, De Paepe P, et al. FOXP1, a gene highly expressed in a subset of diffuse large B-cell lymphoma, is recurrently targeted by genomic aberrations. Leukemia. 2005;19(8):1299-1305.
-
(2005)
Leukemia
, vol.19
, Issue.8
, pp. 1299-1305
-
-
Wlodarska, I.1
Veyt, E.2
De Paepe, P.3
-
19
-
-
7244242358
-
Strong expression of FOXP1 identifies a distinct subset of diffuse large B-cell lymphoma (DLBCL) patients with poor outcome
-
Barrans SL, Fenton JAL, Banham A, Owen RG, Jack AS. Strong expression of FOXP1 identifies a distinct subset of diffuse large B-cell lymphoma (DLBCL) patients with poor outcome. Blood. 2004;104(9):2933-2935.
-
(2004)
Blood
, vol.104
, Issue.9
, pp. 2933-2935
-
-
Barrans, S.L.1
Fenton, J.A.L.2
Banham, A.3
Owen, R.G.4
Jack, A.S.5
-
20
-
-
33744998398
-
Forkhead box protein P1 expression in mucosa-associated lymphoid tissue lymphomas predicts poor prognosis and transformation to diffuse large B-cell lymphoma
-
Sagaert X, de Paepe P, Libbrecht L, et al. Forkhead box protein P1 expression in mucosa-associated lymphoid tissue lymphomas predicts poor prognosis and transformation to diffuse large B-cell lymphoma. J Clin Oncol. 2006;24(16):2490-2497.
-
(2006)
J Clin Oncol
, vol.24
, Issue.16
, pp. 2490-2497
-
-
Sagaert, X.1
De Paepe, P.2
Libbrecht, L.3
-
21
-
-
84865415202
-
High expression of FoxP1 is associated with improved survival in patients with non-small cell lung cancer
-
Feng J, Zhang X, Zhu H, Wang X, Ni S, Huang J. High expression of FoxP1 is associated with improved survival in patients with non-small cell lung cancer. Am J Clin Pathol. 2012;138(2):230-235.
-
(2012)
Am J Clin Pathol
, vol.138
, Issue.2
, pp. 230-235
-
-
Feng, J.1
Zhang, X.2
Zhu, H.3
Wang, X.4
Ni, S.5
Huang, J.6
-
22
-
-
32844455299
-
Loss of expression and nuclear/cytoplasmic localization of the FOXP1 forkhead transcription factor are common events in early endometrial cancer: Relationship with estrogen receptors and HIF-1α expression
-
Giatromanolaki A, Koukourakis MI, Sivridis E, Gatter KC, Harris AL, Banham AH. Loss of expression and nuclear/cytoplasmic localization of the FOXP1 forkhead transcription factor are common events in early endometrial cancer: relationship with estrogen receptors and HIF-1α expression. Mod Pathol. 2006;19(1):9-16.
-
(2006)
Mod Pathol
, vol.19
, Issue.1
, pp. 9-16
-
-
Giatromanolaki, A.1
Koukourakis, M.I.2
Sivridis, E.3
Gatter, K.C.4
Harris, A.L.5
Banham, A.H.6
-
23
-
-
34250897355
-
Expression of the forkhead transcription factor FOXP1 is associated both with hypoxia inducible factors (HIFs) and the androgen receptor in prostate cancer but is not directly regulated by androgens or hypoxia
-
Banham AH, Boddy J, Launchbury R, et al. Expression of the forkhead transcription factor FOXP1 is associated both with hypoxia inducible factors (HIFs) and the androgen receptor in prostate cancer but is not directly regulated by androgens or hypoxia. Prostate. 2007;67(10):1091-1098.
-
(2007)
Prostate
, vol.67
, Issue.10
, pp. 1091-1098
-
-
Banham, A.H.1
Boddy, J.2
Launchbury, R.3
-
24
-
-
2542425538
-
Expression of the forkhead transcription factor FOXP1 is associated with estrogen receptor α and improved survival in primary human breast carcinomas
-
Fox SB, Brown P, Han C, et al. Expression of the forkhead transcription factor FOXP1 is associated with estrogen receptor α and improved survival in primary human breast carcinomas. Clin Cancer Res. 2004;10(10):3521-3527.
-
(2004)
Clin Cancer Res
, vol.10
, Issue.10
, pp. 3521-3527
-
-
Fox, S.B.1
Brown, P.2
Han, C.3
-
25
-
-
84863223625
-
Association of double-positive FOXA1 and FOXP1 immunoreactivities with favorable prognosis of tamoxifen-treated breast cancer patients
-
Ijichi N, Shigekawa T, Ikeda K, et al. Association of double-positive FOXA1 and FOXP1 immunoreactivities with favorable prognosis of tamoxifen-treated breast cancer patients. Horm Cancer. 2012;3(4):147-159..
-
(2012)
Horm Cancer
, vol.3
, Issue.4
, pp. 147-159
-
-
Ijichi, N.1
Shigekawa, T.2
Ikeda, K.3
-
26
-
-
41949123666
-
Potentially oncogenic B-cell activation-induced smaller isoforms of FOXP1 are highly expressed in the activated B cell-like subtype of DLBCL
-
Brown PJ, Ashe SL, Leich E, et al. Potentially oncogenic B-cell activation-induced smaller isoforms of FOXP1 are highly expressed in the activated B cell-like subtype of DLBCL. Blood. 2008;111(5):2816-2824.
-
(2008)
Blood
, vol.111
, Issue.5
, pp. 2816-2824
-
-
Brown, P.J.1
Ashe, S.L.2
Leich, E.3
-
27
-
-
70349215213
-
Preferential expression of truncated isoforms of FOXP1 in primary central nervous system lymphoma
-
Courts C, Brunn A, Montesinos-Rongen M, et al. Preferential expression of truncated isoforms of FOXP1 in primary central nervous system lymphoma. J Neuropathol Exp Neurol. 2009;68(9):972-976.
-
(2009)
J Neuropathol Exp Neurol
, vol.68
, Issue.9
, pp. 972-976
-
-
Courts, C.1
Brunn, A.2
Montesinos-Rongen, M.3
-
28
-
-
84895435815
-
Keratin 19: A key role player in the invasion of human hepatocellular carcinomas
-
Govaere O, Komuta M, Berkers J, et al. Keratin 19: a key role player in the invasion of human hepatocellular carcinomas. Gut. 2014;63(4):674-685.
-
(2014)
Gut
, vol.63
, Issue.4
, pp. 674-685
-
-
Govaere, O.1
Komuta, M.2
Berkers, J.3
-
29
-
-
84949811471
-
-
Hannon Laboratory Accessed July 27, 2015
-
Hannon Laboratory. Fastx-toolkit Hannon Laboratory Web site. http:// hannonlab.cshl.edu/fastx-toolkit/index.html. Accessed July 27, 2015.
-
Fastx-toolkit Hannon Laboratory Web Site
-
-
-
30
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357-359..
-
(2012)
Nat Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
31
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25(9):1105-1111.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
32
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25(16):2078-2079.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
-
33
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28(5):511-515.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
-
34
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010;26(6):841-842.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
36
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
Robinson MD, Smyth GK. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics. 2007;23(21):2881-2887.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
37
-
-
58149193234
-
STRING 8- A global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, et al. STRING 8- A global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 2009;37(Database issue):D412-D416.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D412-D416
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
-
38
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
39
-
-
0038054341
-
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha VK, Lindgren CM, Eriksson K-F, et al. PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet. 2003;34(3):267-273.
-
(2003)
Nat Genet
, vol.34
, Issue.3
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.-F.3
-
40
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
Gabut M, Samavarchi-Tehrani P, Wang X, et al. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell. 2011;147(1):132-146.
-
(2011)
Cell
, vol.147
, Issue.1
, pp. 132-146
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
-
41
-
-
46049096355
-
FOXP1 abnormalities in lymphoma: Translocation breakpoint mapping reveals insights into deregulated transcriptional control
-
Goatly A, Bacon CM, Nakamura S, et al. FOXP1 abnormalities in lymphoma: translocation breakpoint mapping reveals insights into deregulated transcriptional control. Mod Pathol. 2008;21(7):902-911.
-
(2008)
Mod Pathol
, vol.21
, Issue.7
, pp. 902-911
-
-
Goatly, A.1
Bacon, C.M.2
Nakamura, S.3
-
42
-
-
84904088682
-
Ferritin heavy chain in triple negative breast cancer: A favorable prognostic marker that relates to a cluster of differentiation 8 positive (CD8+) effector T-cell response
-
Liu NQ, De Marchi T, Timmermans AM, et al. Ferritin heavy chain in triple negative breast cancer: a favorable prognostic marker that relates to a cluster of differentiation 8 positive (CD8+) effector T-cell response. Mol Cell Proteomics. 2014;13:1814-1827.
-
(2014)
Mol Cell Proteomics
, vol.13
, pp. 1814-1827
-
-
Liu, N.Q.1
De Marchi, T.2
Timmermans, A.M.3
-
43
-
-
34248230089
-
Repression of IFN regulatory factor 8 by DNA methylation is a molecular determinant of apoptotic resistance and metastatic phenotype in metastatic tumor cells
-
Yang D, Thangaraju M, Greeneltch K, et al. Repression of IFN regulatory factor 8 by DNA methylation is a molecular determinant of apoptotic resistance and metastatic phenotype in metastatic tumor cells. Cancer Res. 2007;67(7):3301-3309.
-
(2007)
Cancer Res
, vol.67
, Issue.7
, pp. 3301-3309
-
-
Yang, D.1
Thangaraju, M.2
Greeneltch, K.3
-
44
-
-
47949096781
-
Cancer-related inflammation
-
Mantovani A, Allavena P, Sica A, Balkwill F. Cancer-related inflammation. Nature. 2008;454(7203):436-444.
-
(2008)
Nature
, vol.454
, Issue.7203
, pp. 436-444
-
-
Mantovani, A.1
Allavena, P.2
Sica, A.3
Balkwill, F.4
-
45
-
-
0038002279
-
Tumor microsatellite-instability status as a predictor of benefit from fluorouracil-based adjuvant chemotherapy for colon cancer
-
Ribic CM, Sargent DJ, Moore MJ, Thibodeau SN, French AJ, Goldberg RM, Hamilton SR, Laurent-Puig P, Gryfe R, Shepherd LE, et al. Tumor microsatellite-instability status as a predictor of benefit from fluorouracil-based adjuvant chemotherapy for colon cancer. N Engl J Med 2003; (349):247-257.
-
(2003)
N Engl J Med
, Issue.349
, pp. 247-257
-
-
Ribic, C.M.1
Sargent, D.J.2
Moore, M.J.3
Thibodeau, S.N.4
French, A.J.5
Goldberg, R.M.6
Hamilton, S.R.7
Laurent-Puig, P.8
Gryfe, R.9
Shepherd, L.E.10
-
46
-
-
77949270273
-
Microsatellite instability in colorectal cancer- The stable evidence
-
Vilar E, Gruber SB. Microsatellite instability in colorectal cancer- The stable evidence. Nat Rev Clin Oncol 2010;(7):153-162.
-
(2010)
Nat Rev Clin Oncol
, Issue.7
, pp. 153-162
-
-
Vilar, E.1
Gruber, S.B.2
|