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1
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Culligan EP, Marchesi JR, Hill C, Sleator RD. Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome. Front Microbiol 2014; 5:189; PMID:24808895; http://dx.doi.org/10.3389/ fmicb.2014.00189
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Culligan EP, Sleator RD, Marchesi JR, Hill C. Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family beta-carotene 15,150-monooxygenase. PloS One 2014; 9:e103318; PMID:25058308; http://dx.doi. org/10.1371/journal.pone.0103318
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Contribution of three bile-associated loci, bsh, pva, and btlB, to gastrointestinal persistence and bile tolerance of Listeria monocytogenes
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Bullman S, Lucid A, Corcoran D, Sleator RD, Lucey B. Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus. PloS One 2013; 8:e71515; PMID:24023611; http://dx.doi.org/ 10.1371/journal.pone.0071515
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Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus)
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Koziel M, O'Doherty P, Vandamme P, Corcoran GD, Sleator RD, Lucey B. Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus). Int J Syst Evol Microbiol 2014; 64:2878-83; PMID:24876239; http://dx.doi. org/10.1099/ijs.0.063867-0
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Draft genome sequence of campylobacter corcagiensis strain CIT045T, a representative of a novel campylobacter species isolated from liontailed macaques (Macaca silenus)
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Koziel M, Lucid A, Bullman S, Corcoran GD, Lucey B, Sleator RD. Draft genome sequence of campylobacter corcagiensis strain CIT045T, a representative of a novel campylobacter species isolated from liontailed macaques (Macaca silenus). Gen Announc 2014; 2; PMID:24744327; http://dx.doi.org/ 10.1128/genomeA.00248-14
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Validation of the EntericBio Panel II(R) multiplex polymerase chain reaction system for detection of Campylobacter spp., Salmonella spp., Shigella spp., and verotoxigenic E. coli for use in a clinical diagnostic setting
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Koziel M, Corcoran D, O'Callaghan I, Sleator RD, Lucey B. Validation of the EntericBio Panel II(R) multiplex polymerase chain reaction system for detection of Campylobacter spp., Salmonella spp., Shigella spp., and verotoxigenic E. coli for use in a clinical diagnostic setting. Diagn Microbiol Infect Dis 2013; 75:46-9; PMID:23182078; http://dx.doi.org/ 10.1016/j.diagmicrobio.2012.09.007
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Diagn Microbiol Infect Dis
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Improved detection of bacterial pathogens in patients presenting with gastroenteritis by use of the EntericBio real-time Gastro Panel I assay
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84
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77955171932
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Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland
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Collins PJ, Martella V, Sleator RD, Fanning S, O'Shea H. Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland. Arch Virol 2010; 155:1247-59; PMID:20526785; http://dx.doi.org/10.1007/s00705-010-0713-1
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Arch Virol
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Cashman O, Lennon G, Sleator RD, Power E, Fanning S, O'Shea H. Changing profile of the bovine rotavirus G6 population in the south of Ireland from 2002 to 2009. Vet Microbiol 2010; 146:238-44; PMID:20541335; http://dx.doi.org/10.1016/j. vetmic.2010.05.012
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Vet Microbiol
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Detection and genetic characterization of canine parvoviruses and coronaviruses in southern Ireland
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McElligott S, Collins PJ, Sleator RD, Martella V, Decaro N, Buonavoglia C, O'Shea H. Detection and genetic characterization of canine parvoviruses and coronaviruses in southern Ireland. Arch Virol 2011; 156:495-503; PMID:21107617; http://dx.doi.org/ 10.1007/s00705-010-0861-3
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Arch Virol
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Sleator RD. Phylogenetics. Arch Microbiol 2011; 193:235-9; PMID:21249334; http://dx.doi.org/ 10.1007/s00203-011-0677-x
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Sleator RD. A beginner's guide to phylogenetics. Microb Ecol 2013; 66:1-4; PMID:23624570; http:// dx.doi.org/10.1007/s00248-013-0236-x
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Microb Ecol
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In silico analysis of Ardmore, a novel mycobacteriophage isolated from soil
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Henry M, O'Sullivan O, Sleator RD, Coffey A, Ross RP, McAuliffe O, O'Mahony JM. In silico analysis of Ardmore, a novel mycobacteriophage isolated from soil. Gene 2010; 453:9-23; PMID:20064590; http:// dx.doi.org/10.1016/j.gene.2009.12.007
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Gene
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90
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An overview of the current status of eukaryote gene prediction strategies
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Sleator RD. An overview of the current status of eukaryote gene prediction strategies. Gene 2010; 461:1-4; PMID:20430068; http://dx.doi.org/ 10.1016/j.gene.2010.04.008
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Gene
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Lysins to kill - a tale of viral weapons of mass destruction
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O'Mahony J, Fenton M, Henry M, Sleator RD, Coffey A. Lysins to kill - a tale of viral weapons of mass destruction. Bioeng Bugs 2011; 2:306-8; PMID: 22008941; http://dx.doi.org/10.4161/bbug.2.6.16804
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Bioeng Bugs
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92
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Genomics of Weissella cibaria with an examination of its metabolic traits
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Lynch KM, Lucid A, Arendt EK, Sleator RD, Lucey B, Coffey A. Genomics of Weissella cibaria with an examination of its metabolic traits. Microbiology 2015; 161:914-30; PMID:25678547; http://dx.doi. org/10.1099/mic.0.000053
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Microbiology
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93
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An overview of the processes shaping protein evolution
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Sleator RD. An overview of the processes shaping protein evolution. Sci Prog 2010; 93:1-6; PMID:20222353; http://dx.doi.org/10.3184/003685009X12605492662844
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Sleator RD, Walsh P. An overview of in silico protein function prediction. Arch Microbiol 2010; 192:151- 5; PMID:20127480; http://dx.doi.org/10.1007/ s00203-010-0549-9
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Comparative modelling of LysB from the mycobacterial bacteriophage Ardmore
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Henry M, Coffey A, J OM, Sleator RD. Comparative modelling of LysB from the mycobacterial bacteriophage Ardmore. Bioeng Bugs 2011; 2:88-95; PMID:21636995; http://dx.doi.org/10.4161/ bbug.2.2.14138
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Bioeng Bugs
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In silico modeling of the staphylococcal bacteriophage-derived peptidase CHAP(K)
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Fenton M, Cooney JC, Ross RP, Sleator RD, McAuliffe O, O'Mahony J, Coffey A. In silico modeling of the staphylococcal bacteriophage-derived peptidase CHAP(K). Bacteriophage 2011; 1:198-206; PMID:23050213; http://dx.doi.org/10.4161/ bact.1.4.18245
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Bacteriophage
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97
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Proteins: form and function
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Sleator RD. Proteins: form and function. Bioeng Bugs 2012; 3:80-5; PMID:22095055; http://dx.doi.org/ 10.4161/bbug.18303
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Bioeng Bugs
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Sleator RD. Prediction of protein functions. Methods Mol Biol 2012; 815:15-24; PMID:22130980; http:// dx.doi.org/10.1007/978-1-61779-424-7_2
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Methods Mol Biol
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The story of Mycoplasma mycoides JCVI-syn1.0: the forty million dollar microbe
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Sleator RD. The story of Mycoplasma mycoides JCVI-syn1.0: the forty million dollar microbe. Bioeng Bugs 2010; 1:229-30; PMID:21327053
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Bioeng Bugs
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Ferretting out the facts behind the H5N1 controversy
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Sleator RD. Ferretting out the facts behind the H5N1 controversy. Bioeng Bugs 2012; 3:139-43; PMID:22402712; http://dx.doi.org/10.4161/ bbug.20136
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Bioeng Bugs
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Digital biology: a new era has begun
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Sleator RD. Digital biology: a new era has begun. Bioengineered 2012; 3:311-2; PMID:23099453; http:// dx.doi.org/10.4161/bioe.22367
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Bioengineered
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Sleator RD. Synthetic ribosomes: making molecules that make molecules. Bioengineered 2013; 4:63-4; PMID:23324614; http://dx.doi.org/10.4161/ bioe.23640
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Bioengineered
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Sleator RD, O'Driscoll A. Digitizing humanity. Artificial DNA, PNA & XNA 2013; 4:37-8; PMID: 23912716; http://dx.doi.org/10.4161/adna.25489
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Artificial DNA, PNA & XNA
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The synthetic biology future
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Sleator RD. The synthetic biology future. Bioengineered 2014; 5:69-72; PMID:24561910; http://dx. doi.org/10.4161/bioe.28317
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Bioengineered
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Genetics just got SEXY: Sequences encoding XY
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Sleator RD. Genetics just got SEXY: Sequences encoding XY. Bioengineered 2014; 5:214-5; PMID:24847983; http://dx.doi.org/10.4161/bioe.29306
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Bioengineered
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The genetic code. Rewritten, revised, repurposed
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Sleator RD. The genetic code. Rewritten, revised, repurposed. Artificial DNA, PNA & XNA 2014; 5: e29408; PMID:25483933; http://dx.doi.org/ 10.4161/adna.29408
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Artificial DNA, PNA & XNA
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'Big data', Hadoop and cloud computing in genomics
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O'Driscoll A, Daugelaite J, Sleator RD. 'Big data', Hadoop and cloud computing in genomics. J Biomed Inform 2013; 46:774-81; PMID:23872175; http:// dx.doi.org/10.1016/j.jbi.2013.07.001
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J Biomed Inform
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Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics
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Manning T, Sleator RD, Walsh P. Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics. Bioengineered 2014; 5:80-95; PMID:24335433; http://dx.doi.org/10.4161/bioe.26997
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Bioengineered
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Naturally selecting solutions: the use of genetic algorithms in bioinformatics
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Manning T, Sleator RD, Walsh P. Naturally selecting solutions: the use of genetic algorithms in bioinformatics. Bioengineered 2013; 4:266-78; PMID: 23222169; http://dx.doi.org/10.4161/bioe.23041
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Bioengineered
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Accelerating in silico research with workflows: a lesson in Simplicity
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Walsh P, Carroll J, Sleator RD. Accelerating in silico research with workflows: a lesson in Simplicity. Comput Biol Med 2013; 43:2028-35; PMID:24290918; http://dx.doi.org/10.1016/j. compbiomed.2013.09.011
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Comput Biol Med
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HBLAST: Parallelised sequence similarity - A Hadoop MapReducable basic local alignment search tool
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O'Driscoll A, Belogrudov V, Carroll J, Kropp K, Walsh P, Ghazal P, Sleator RD. HBLAST: Parallelised sequence similarity - A Hadoop MapReducable basic local alignment search tool. J Biomed Inform 2015; 54:58-64; PMID:25625550; http://dx.doi.org/ 10.1016/j.jbi.2015.01.008
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Draft genome sequences of six different staphylococcus epidermidis clones, isolated individually from preterm neonates presenting with sepsis at Edinburgh's royal infirmary
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Kropp, K.A.1
Lucid, A.2
Carroll, J.3
Belgrudov, V.4
Walsh, P.5
Kelly, B.6
Smith, C.7
Dickinson, P.8
O'Driscoll, A.9
Templeton, K.10
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