-
1
-
-
18844392599
-
Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli
-
Alper, H., Jin, Y.S., Moxley, J.F., and, Stephanopoulos, G., (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab. Eng. 7, 155-164.
-
(2005)
Metab. Eng.
, vol.7
, pp. 155-164
-
-
Alper, H.1
Jin, Y.S.2
Moxley, J.F.3
Stephanopoulos, G.4
-
2
-
-
66749108480
-
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor
-
Atteia, A., Adrait, A., Brugiere, S., et al. (2009) A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Mol. Biol. Evol. 26, 1533-1548.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1533-1548
-
-
Atteia, A.1
Adrait, A.2
Brugiere, S.3
-
3
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., Coin, L., Durbin, R., et al. (2004) The Pfam protein families database. Nucleic Acids Res. 32, D138-D141.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D138-D141
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
-
4
-
-
0037560830
-
Molecular analysis of the Chlamydomonas nuclear gene encoding PsbW and demonstration that PsbW is a subunit of photosystem II, but not photosystem i
-
Bishop, C.L., Purton, S., and, Nugent, J.H., (2003) Molecular analysis of the Chlamydomonas nuclear gene encoding PsbW and demonstration that PsbW is a subunit of photosystem II, but not photosystem I. Plant Mol. Biol. 52, 285-289.
-
(2003)
Plant Mol. Biol.
, vol.52
, pp. 285-289
-
-
Bishop, C.L.1
Purton, S.2
Nugent, J.H.3
-
5
-
-
84891519072
-
Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant
-
Blaby, I.K., Glaesener, A.G., Mettler, T., et al. (2013) Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. Plant Cell, 25, 4305-4323.
-
(2013)
Plant Cell
, vol.25
, pp. 4305-4323
-
-
Blaby, I.K.1
Glaesener, A.G.2
Mettler, T.3
-
6
-
-
84908165002
-
The Chlamydomonas genome project: A decade on
-
Blaby, I.K., Blaby-Haas, C.E., Tourasse, N., et al. (2014) The Chlamydomonas genome project: a decade on. Trends Plant Sci. 19, 672-680.
-
(2014)
Trends Plant Sci.
, vol.19
, pp. 672-680
-
-
Blaby, I.K.1
Blaby-Haas, C.E.2
Tourasse, N.3
-
7
-
-
33645000533
-
Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation
-
Bolling, C., and, Fiehn, O., (2005) Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation. Plant Physiol. 139, 1995-2005.
-
(2005)
Plant Physiol.
, vol.139
, pp. 1995-2005
-
-
Bolling, C.1
Fiehn, O.2
-
8
-
-
58849135386
-
Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii
-
Boyle, N.R., and, Morgan, J.A., (2009) Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii. BMC Syst. Biol. 3, 4.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 4
-
-
Boyle, N.R.1
Morgan, J.A.2
-
9
-
-
84860864006
-
Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas
-
Boyle, N.R., Page, M.D., Liu, B., et al. (2012) Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas. J. Biol. Chem. 287, 15811-15825.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 15811-15825
-
-
Boyle, N.R.1
Page, M.D.2
Liu, B.3
-
10
-
-
57449111072
-
Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana
-
Branco-Price, C., Kaiser, K.A., Jang, C.J., Larive, C.K., and, Bailey-Serres, J., (2008) Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J. 56, 743-755.
-
(2008)
Plant J.
, vol.56
, pp. 743-755
-
-
Branco-Price, C.1
Kaiser, K.A.2
Jang, C.J.3
Larive, C.K.4
Bailey-Serres, J.5
-
11
-
-
19044375107
-
The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project
-
Cardol, P., Gonzalez-Halphen, D., Reyes-Prieto, A., Baurain, D., Matagne, R.F., and, Remacle, C., (2005) The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project. Plant Physiol. 137, 447-459.
-
(2005)
Plant Physiol.
, vol.137
, pp. 447-459
-
-
Cardol, P.1
Gonzalez-Halphen, D.2
Reyes-Prieto, A.3
Baurain, D.4
Matagne, R.F.5
Remacle, C.6
-
12
-
-
79957609529
-
Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps
-
Castruita, M., Casero, D., Karpowicz, S.J., et al. (2011) Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps. Plant Cell, 23, 1273-1292.
-
(2011)
Plant Cell
, vol.23
, pp. 1273-1292
-
-
Castruita, M.1
Casero, D.2
Karpowicz, S.J.3
-
13
-
-
80051537012
-
Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism
-
Chang, R.L., Ghamsari, L., Manichaikul, A., et al. (2011) Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. Mol. Syst. Biol. 7, 518.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 518
-
-
Chang, R.L.1
Ghamsari, L.2
Manichaikul, A.3
-
14
-
-
0028050944
-
Substrate inhibition of Chlamydomonas reinhardtii by acetate in heterotrophic culture
-
Chen, F., and, Johns, M.R., (1994) Substrate inhibition of Chlamydomonas reinhardtii by acetate in heterotrophic culture. Process Biochem. 29, 245-252.
-
(1994)
Process Biochem.
, vol.29
, pp. 245-252
-
-
Chen, F.1
Johns, M.R.2
-
15
-
-
33947617349
-
Biodiesel from microalgae
-
Chisti, Y., (2007) Biodiesel from microalgae. Biotechnol. Adv. 25, 294-306.
-
(2007)
Biotechnol. Adv.
, vol.25
, pp. 294-306
-
-
Chisti, Y.1
-
16
-
-
70049110173
-
Interpreting expression data with metabolic flux models: Predicting Mycobacterium tuberculosis mycolic acid production
-
Colijn, C., Brandes, A., Zucker, J., Lun, D.S., Weiner, B., Farhat, M.R., Cheng, T.Y., Moody, D.B., Murray, M., and, Galagan, J.E., (2009) Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. PLoS Comput. Biol. 5, e1000489.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000489
-
-
Colijn, C.1
Brandes, A.2
Zucker, J.3
Lun, D.S.4
Weiner, B.5
Farhat, M.R.6
Cheng, T.Y.7
Moody, D.B.8
Murray, M.9
Galagan, J.E.10
-
17
-
-
33747374091
-
Algae need their vitamins
-
Croft, M.T., Warren, M.J., and, Smith, A.G., (2006) Algae need their vitamins. Eukaryot. Cell, 5, 1175-1183.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1175-1183
-
-
Croft, M.T.1
Warren, M.J.2
Smith, A.G.3
-
18
-
-
84878655763
-
Metabolic acclimation to excess light intensity in Chlamydomonas reinhardtii
-
Davis, M.C., Fiehn, O., and, Durnford, D.G., (2013) Metabolic acclimation to excess light intensity in Chlamydomonas reinhardtii. Plant Cell Environ. 36, 1391-1405.
-
(2013)
Plant Cell Environ.
, vol.36
, pp. 1391-1405
-
-
Davis, M.C.1
Fiehn, O.2
Durnford, D.G.3
-
19
-
-
84874454315
-
Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival
-
Duanmu, D., Casero, D., Dent, R.M., et al. (2013) Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proc. Natl Acad. Sci. USA, 110, 3621-3626.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 3621-3626
-
-
Duanmu, D.1
Casero, D.2
Dent, R.M.3
-
20
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G., and, Nielsen, H., (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
21
-
-
79958128569
-
A chloroplast pathway for the de novo biosynthesis of triacylglycerol in Chlamydomonas reinhardtii
-
Fan, J., Andre, C., and, Xu, C., (2011) A chloroplast pathway for the de novo biosynthesis of triacylglycerol in Chlamydomonas reinhardtii. FEBS Lett. 585, 1985-1991.
-
(2011)
FEBS Lett.
, vol.585
, pp. 1985-1991
-
-
Fan, J.1
Andre, C.2
Xu, C.3
-
22
-
-
3142760057
-
3 system in the oceans
-
3 system in the oceans. Science, 305, 362-366.
-
(2004)
Science
, vol.305
, pp. 362-366
-
-
Feely, R.A.1
Sabine, C.L.2
Lee, K.3
Berelson, W.4
Kleypas, J.5
Fabry, V.J.6
Millero, F.J.7
-
23
-
-
84882692468
-
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
-
Guo, Y., Sheng, Q., Li, J., Ye, F., Samuels, D.C., and, Shyr, Y., (2013) Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. PLoS One, 8, e71462.
-
(2013)
PLoS One
, vol.8
, pp. e71462
-
-
Guo, Y.1
Sheng, Q.2
Li, J.3
Ye, F.4
Samuels, D.C.5
Shyr, Y.6
-
25
-
-
84879545703
-
Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
-
Hemschemeier, A., Duner, M., Casero, D., Merchant, S.S., Winkler, M., and, Happe, T., (2013) Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide. Proc. Natl Acad. Sci. USA, 110, 10854-10859.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 10854-10859
-
-
Hemschemeier, A.1
Duner, M.2
Casero, D.3
Merchant, S.S.4
Winkler, M.5
Happe, T.6
-
26
-
-
67650573077
-
IBsu1103: A new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
-
Henry, C.S., Zinner, J.F., Cohoon, M.P., and, Stevens, R.L., (2009) iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations. Genome Biol. 10, R69.
-
(2009)
Genome Biol.
, vol.10
, pp. R69
-
-
Henry, C.S.1
Zinner, J.F.2
Cohoon, M.P.3
Stevens, R.L.4
-
27
-
-
84857667053
-
The geological record of ocean acidification
-
Honisch, B., Ridgwell, A., Schmidt, D.N., et al. (2012) The geological record of ocean acidification. Science, 335, 1058-1063.
-
(2012)
Science
, vol.335
, pp. 1058-1063
-
-
Honisch, B.1
Ridgwell, A.2
Schmidt, D.N.3
-
28
-
-
84904741707
-
Enhancement of extraplastidic oil synthesis in Chlamydomonas reinhardtii using a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter
-
Iwai, M., Ikeda, K., Shimojima, M., and, Ohta, H., (2014) Enhancement of extraplastidic oil synthesis in Chlamydomonas reinhardtii using a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter. Plant Biotechnol. J. 12, 808-819.
-
(2014)
Plant Biotechnol. J.
, vol.12
, pp. 808-819
-
-
Iwai, M.1
Ikeda, K.2
Shimojima, M.3
Ohta, H.4
-
29
-
-
0032479298
-
Arrangement of the multicopy H+-translocating subunit c in the membrane sector of the Escherichia coli F1F0 ATP synthase
-
Jones, P.C., Jiang, W., and, Fillingame, R.H., (1998) Arrangement of the multicopy H+-translocating subunit c in the membrane sector of the Escherichia coli F1F0 ATP synthase. J. Biol. Chem. 273, 17178-17185.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 17178-17185
-
-
Jones, P.C.1
Jiang, W.2
Fillingame, R.H.3
-
30
-
-
0036081062
-
The KEGG databases at GenomeNet
-
Kanehisa, M., Goto, S., Kawashima, S., and, Nakaya, A., (2002) The KEGG databases at GenomeNet. Nucleic Acids Res. 30, 42-46.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Nakaya, A.4
-
31
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and, Tanabe, M., (2014) Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42, D199-D205.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
32
-
-
84899633396
-
Defining functional DNA elements in the human genome
-
Kellis, M., Wold, B., Snyder, M.P., et al. (2014) Defining functional DNA elements in the human genome. Proc. Natl Acad. Sci. USA, 111, 6131-6138.
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 6131-6138
-
-
Kellis, M.1
Wold, B.2
Snyder, M.P.3
-
33
-
-
84866539049
-
RELATCH: Relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations
-
Kim, J., and, Reed, J.L., (2012) RELATCH: relative optimality in metabolic networks explains robust metabolic and regulatory responses to perturbations. Genome Biol. 13, R78.
-
(2012)
Genome Biol.
, vol.13
, pp. R78
-
-
Kim, J.1
Reed, J.L.2
-
34
-
-
84923516679
-
Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment
-
Kleessen, S., Irgang, S., Klie, S., Giavalisco, P., and, Nikoloski, Z., (2015) Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. Plant J. 81, 822-835.
-
(2015)
Plant J.
, vol.81
, pp. 822-835
-
-
Kleessen, S.1
Irgang, S.2
Klie, S.3
Giavalisco, P.4
Nikoloski, Z.5
-
35
-
-
84857685464
-
Metabolic modeling of Chlamydomonas reinhardtii: Energy requirements for photoautotrophic growth and maintenance
-
Kliphuis, A.M., Klok, A.J., Martens, D.E., Lamers, P.P., Janssen, M., and, Wijffels, R.H., (2011) Metabolic modeling of Chlamydomonas reinhardtii: energy requirements for photoautotrophic growth and maintenance. J. Appl. Phycol. 24, 253-266.
-
(2011)
J. Appl. Phycol.
, vol.24
, pp. 253-266
-
-
Kliphuis, A.M.1
Klok, A.J.2
Martens, D.E.3
Lamers, P.P.4
Janssen, M.5
Wijffels, R.H.6
-
36
-
-
84857964166
-
Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks
-
Krasensky, J., and, Jonak, C., (2012) Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks. J. Exp. Bot. 63, 1593-1608.
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 1593-1608
-
-
Krasensky, J.1
Jonak, C.2
-
37
-
-
84865958323
-
Characterization of an internal type-II NADH dehydrogenase from Chlamydomonas reinhardtii mitochondria
-
Lecler, R., Vigeolas, H., Emonds-Alt, B., Cardol, P., and, Remacle, C., (2012) Characterization of an internal type-II NADH dehydrogenase from Chlamydomonas reinhardtii mitochondria. Curr. Genet. 58, 205-216.
-
(2012)
Curr. Genet.
, vol.58
, pp. 205-216
-
-
Lecler, R.1
Vigeolas, H.2
Emonds-Alt, B.3
Cardol, P.4
Remacle, C.5
-
38
-
-
33750458683
-
Powering the planet: Chemical challenges in solar energy utilization
-
Lewis, N.S., and, Nocera, D.G., (2006) Powering the planet: chemical challenges in solar energy utilization. Proc. Natl Acad. Sci. USA, 103, 15729-15735.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 15729-15735
-
-
Lewis, N.S.1
Nocera, D.G.2
-
39
-
-
78049434298
-
Synthesizing and salvaging NAD: Lessons learned from Chlamydomonas reinhardtii
-
Lin, H., Kwan, A.L., and, Dutcher, S.K., (2010) Synthesizing and salvaging NAD: lessons learned from Chlamydomonas reinhardtii. PLoS Genet. 6, e1001105.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001105
-
-
Lin, H.1
Kwan, A.L.2
Dutcher, S.K.3
-
40
-
-
0037986673
-
Identification of novel mitochondrial protein components of Chlamydomonas reinhardtii. A proteomic approach
-
van Lis, R., Atteia, A., Mendoza-Hernandez, G., and, Gonzalez-Halphen, D., (2003) Identification of novel mitochondrial protein components of Chlamydomonas reinhardtii. A proteomic approach. Plant Physiol. 132, 318-330.
-
(2003)
Plant Physiol.
, vol.132
, pp. 318-330
-
-
Van Lis, R.1
Atteia, A.2
Mendoza-Hernandez, G.3
Gonzalez-Halphen, D.4
-
41
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan, R., and, Schilling, C.H., (2003) The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab. Eng. 5, 264-276.
-
(2003)
Metab. Eng.
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
42
-
-
58149345565
-
Basal bodies platforms for building cilia
-
Marshall, W.F., (2008) Basal bodies platforms for building cilia. Curr. Top. Dev. Biol. 85, 1-22.
-
(2008)
Curr. Top. Dev. Biol.
, vol.85
, pp. 1-22
-
-
Marshall, W.F.1
-
43
-
-
84879002382
-
Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
-
McCloskey, D., Palsson, B.O., and, Feist, A.M., (2013) Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Mol. Syst. Biol. 9, 661.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 661
-
-
McCloskey, D.1
Palsson, B.O.2
Feist, A.M.3
-
44
-
-
84923115986
-
The geographical distribution of fossil fuels unused when limiting global warming to 2 degrees C
-
McGlade, C., and, Ekins, P., (2015) The geographical distribution of fossil fuels unused when limiting global warming to 2 degrees C. Nature, 517, 187-190.
-
(2015)
Nature
, vol.517
, pp. 187-190
-
-
McGlade, C.1
Ekins, P.2
-
45
-
-
84989672482
-
Effect of nitrogen starvation on ammonium assimilation by Chlamydomonas reinhardtii
-
Menacho, A., and, Vega, J.M., (1989) Effect of nitrogen starvation on ammonium assimilation by Chlamydomonas reinhardtii. Physiol. Plant. 75, 285-289.
-
(1989)
Physiol. Plant.
, vol.75
, pp. 285-289
-
-
Menacho, A.1
Vega, J.M.2
-
46
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
Merchant, S.S., Prochnik, S.E., Vallon, O., et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 318, 245-250.
-
(2007)
Science
, vol.318
, pp. 245-250
-
-
Merchant, S.S.1
Prochnik, S.E.2
Vallon, O.3
-
47
-
-
84904975689
-
Systems analysis of the response of photosynthesis, metabolism, and growth to an increase in irradiance in the photosynthetic model organism Chlamydomonas reinhardtii
-
Mettler, T., Muhlhaus, T., Hemme, D., et al. (2014) Systems analysis of the response of photosynthesis, metabolism, and growth to an increase in irradiance in the photosynthetic model organism Chlamydomonas reinhardtii. Plant Cell, 26, 2310-2350.
-
(2014)
Plant Cell
, vol.26
, pp. 2310-2350
-
-
Mettler, T.1
Muhlhaus, T.2
Hemme, D.3
-
48
-
-
78649786133
-
Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism
-
Miller, R., Wu, G., Deshpande, R.R., et al. (2010) Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism. Plant Physiol. 154, 1737-1752.
-
(2010)
Plant Physiol.
, vol.154
, pp. 1737-1752
-
-
Miller, R.1
Wu, G.2
Deshpande, R.R.3
-
49
-
-
73849090293
-
Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
-
Milne, C.B., Kim, P.J., Eddy, J.A., and, Price, N.D., (2009) Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology. Biotechnol. J. 4, 1653-1670.
-
(2009)
Biotechnol. J.
, vol.4
, pp. 1653-1670
-
-
Milne, C.B.1
Kim, P.J.2
Eddy, J.A.3
Price, N.D.4
-
50
-
-
0036728244
-
Oxidative stress, antioxidants and stress tolerance
-
Mittler, R., (2002) Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci. 7, 405-410.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 405-410
-
-
Mittler, R.1
-
51
-
-
84883399959
-
Analysis of Chlamydomonas thiamin metabolism in vivo reveals riboswitch plasticity
-
Moulin, M., Nguyen, G.T., Scaife, M.A., Smith, A.G., and, Fitzpatrick, T.B., (2013) Analysis of Chlamydomonas thiamin metabolism in vivo reveals riboswitch plasticity. Proc. Natl Acad. Sci. USA, 110, 14622-14627.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 14622-14627
-
-
Moulin, M.1
Nguyen, G.T.2
Scaife, M.A.3
Smith, A.G.4
Fitzpatrick, T.B.5
-
52
-
-
84856211888
-
Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169
-
Msanne, J., Xu, D., Konda, A.R., Casas-Mollano, J.A., Awada, T., Cahoon, E.B., and, Cerutti, H., (2012) Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169. Phytochemistry, 75, 50-59.
-
(2012)
Phytochemistry
, vol.75
, pp. 50-59
-
-
Msanne, J.1
Xu, D.2
Konda, A.R.3
Casas-Mollano, J.A.4
Awada, T.5
Cahoon, E.B.6
Cerutti, H.7
-
53
-
-
0142183476
-
Zeaxanthin deficiency enhances the high light sensitivity of an ascorbate-deficient mutant of Arabidopsis
-
Muller-Moule, P., Havaux, M., and, Niyogi, K.K., (2003) Zeaxanthin deficiency enhances the high light sensitivity of an ascorbate-deficient mutant of Arabidopsis. Plant Physiol. 133, 748-760.
-
(2003)
Plant Physiol.
, vol.133
, pp. 748-760
-
-
Muller-Moule, P.1
Havaux, M.2
Niyogi, K.K.3
-
55
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
Oberhardt, M.A., Palsson, B.O., and, Papin, J.A., (2009) Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol. 5, 320.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.O.2
Papin, J.A.3
-
56
-
-
78650539308
-
From RNA-seq reads to differential expression results
-
Oshlack, A., Robinson, M.D., and, Young, M.D., (2010) From RNA-seq reads to differential expression results. Genome Biol. 11, 220.
-
(2010)
Genome Biol.
, vol.11
, pp. 220
-
-
Oshlack, A.1
Robinson, M.D.2
Young, M.D.3
-
57
-
-
0033764285
-
The challenges of in silico biology
-
Palsson, B., (2000) The challenges of in silico biology. Nat. Biotechnol. 18, 1147-1150.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1147-1150
-
-
Palsson, B.1
-
58
-
-
34249934691
-
Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
-
Park, J.H., Lee, K.H., Kim, T.Y., and, Lee, S.Y., (2007) Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation. Proc. Natl Acad. Sci. USA, 104, 7797-7802.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 7797-7802
-
-
Park, J.H.1
Lee, K.H.2
Kim, T.Y.3
Lee, S.Y.4
-
59
-
-
84922593685
-
The response of Chlamydomonas reinhardtii to nitrogen deprivation: A systems biology analysis
-
Park, J.J., Wang, H., Gargouri, M., Deshpande, R.R., Skepper, J.N., Holguin, F.O., Juergens, M.T., Shachar-Hill, Y., Hicks, L.M., and, Gang, D.R., (2015) The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis. Plant J. 81, 611-624.
-
(2015)
Plant J.
, vol.81
, pp. 611-624
-
-
Park, J.J.1
Wang, H.2
Gargouri, M.3
Deshpande, R.R.4
Skepper, J.N.5
Holguin, F.O.6
Juergens, M.T.7
Shachar-Hill, Y.8
Hicks, L.M.9
Gang, D.R.10
-
60
-
-
22244458310
-
Proteomic analysis of a eukaryotic cilium
-
Pazour, G.J., Agrin, N., Leszyk, J., and, Witman, G.B., (2005) Proteomic analysis of a eukaryotic cilium. J. Cell Biol. 170, 103-113.
-
(2005)
J. Cell Biol.
, vol.170
, pp. 103-113
-
-
Pazour, G.J.1
Agrin, N.2
Leszyk, J.3
Witman, G.B.4
-
61
-
-
84859126220
-
Carotenoid deficiency triggers autophagy in the model green alga Chlamydomonas reinhardtii
-
Perez-Perez, M.E., Couso, I., and, Crespo, J.L., (2012) Carotenoid deficiency triggers autophagy in the model green alga Chlamydomonas reinhardtii. Autophagy, 8, 376-388.
-
(2012)
Autophagy
, vol.8
, pp. 376-388
-
-
Perez-Perez, M.E.1
Couso, I.2
Crespo, J.L.3
-
62
-
-
80655136471
-
Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function
-
Petti, A.A., Crutchfield, C.A., Rabinowitz, J.D., and, Botstein, D., (2011) Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function. Proc. Natl Acad. Sci. USA, 108, E1089-E1098.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. E1089-E1098
-
-
Petti, A.A.1
Crutchfield, C.A.2
Rabinowitz, J.D.3
Botstein, D.4
-
63
-
-
34547732425
-
The oligomeric state of c rings from cyanobacterial F-ATP synthases varies from 13 to 15
-
Pogoryelov, D., Reichen, C., Klyszejko, A.L., Brunisholz, R., Muller, D.J., Dimroth, P., and, Meier, T., (2007) The oligomeric state of c rings from cyanobacterial F-ATP synthases varies from 13 to 15. J. Bacteriol. 189, 5895-5902.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5895-5902
-
-
Pogoryelov, D.1
Reichen, C.2
Klyszejko, A.L.3
Brunisholz, R.4
Muller, D.J.5
Dimroth, P.6
Meier, T.7
-
64
-
-
84908691547
-
Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis
-
Recht, L., Topfer, N., Batushansky, A., Sikron, N., Gibon, Y., Fait, A., Nikoloski, Z., Boussiba, S., and, Zarka, A., (2014) Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis. J. Biol. Chem. 289, 30387-30403.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 30387-30403
-
-
Recht, L.1
Topfer, N.2
Batushansky, A.3
Sikron, N.4
Gibon, Y.5
Fait, A.6
Nikoloski, Z.7
Boussiba, S.8
Zarka, A.9
-
65
-
-
84866128045
-
Shrinking the metabolic solution space using experimental datasets
-
Reed, J.L., (2012) Shrinking the metabolic solution space using experimental datasets. PLoS Comput. Biol. 8, e1002662.
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. e1002662
-
-
Reed, J.L.1
-
66
-
-
84918491992
-
Green genes: Bioinformatics and systems-biology innovations drive algal biotechnology
-
Reijnders, M.J., van Heck, R.G., Lam, C.M., Scaife, M.A., dos Santos, V.A., Smith, A.G., and, Schaap, P.J., (2014) Green genes: bioinformatics and systems-biology innovations drive algal biotechnology. Trends Biotechnol. 32, 617-626.
-
(2014)
Trends Biotechnol.
, vol.32
, pp. 617-626
-
-
Reijnders, M.J.1
Van Heck, R.G.2
Lam, C.M.3
Scaife, M.A.4
Dos Santos, V.A.5
Smith, A.G.6
Schaap, P.J.7
-
67
-
-
0037010172
-
Chlamydomonas, a model system for studying the assembly and dynamics of photosynthetic complexes
-
Rochaix, J.D., (2002) Chlamydomonas, a model system for studying the assembly and dynamics of photosynthetic complexes. FEBS Lett. 529, 34-38.
-
(2002)
FEBS Lett.
, vol.529
, pp. 34-38
-
-
Rochaix, J.D.1
-
68
-
-
84882365162
-
Nitric oxide controls nitrate and ammonium assimilation in Chlamydomonas reinhardtii
-
Sanz-Luque, E., Ocana-Calahorro, F., Llamas, A., Galvan, A., and, Fernandez, E., (2013) Nitric oxide controls nitrate and ammonium assimilation in Chlamydomonas reinhardtii. J. Exp. Bot. 64, 3373-3383.
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 3373-3383
-
-
Sanz-Luque, E.1
Ocana-Calahorro, F.2
Llamas, A.3
Galvan, A.4
Fernandez, E.5
-
69
-
-
77957934656
-
Microalgae: The potential for carbon capture
-
Sayre, R., (2010) Microalgae: the potential for carbon capture. Bioscience, 60, 722-727.
-
(2010)
Bioscience
, vol.60
, pp. 722-727
-
-
Sayre, R.1
-
70
-
-
77953361331
-
Biodiesel from algae: Challenges and prospects
-
Scott, S.A., Davey, M.P., Dennis, J.S., Horst, I., Howe, C.J., Lea-Smith, D.J., and, Smith, A.G., (2010) Biodiesel from algae: challenges and prospects. Curr. Opin. Biotechnol. 21, 277-286.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 277-286
-
-
Scott, S.A.1
Davey, M.P.2
Dennis, J.S.3
Horst, I.4
Howe, C.J.5
Lea-Smith, D.J.6
Smith, A.G.7
-
71
-
-
0034713072
-
Structural biology. Proton-powered turbine of a plant motor
-
Seelert, H., Poetsch, A., Dencher, N.A., Engel, A., Stahlberg, H., and, Muller, D.J., (2000) Structural biology. Proton-powered turbine of a plant motor. Nature, 405, 418-419.
-
(2000)
Nature
, vol.405
, pp. 418-419
-
-
Seelert, H.1
Poetsch, A.2
Dencher, N.A.3
Engel, A.4
Stahlberg, H.5
Muller, D.J.6
-
72
-
-
51349092391
-
Network-based prediction of human tissue-specific metabolism
-
Shlomi, T., Cabili, M.N., Herrgard, M.J., Palsson, B.O., and, Ruppin, E., (2008) Network-based prediction of human tissue-specific metabolism. Nat. Biotechnol. 26, 1003-1010.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1003-1010
-
-
Shlomi, T.1
Cabili, M.N.2
Herrgard, M.J.3
Palsson, B.O.4
Ruppin, E.5
-
73
-
-
2942589051
-
Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
-
Small, I., Peeters, N., Legeai, F., and, Lurin, C., (2004) Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics, 4, 1581-1590.
-
(2004)
Proteomics
, vol.4
, pp. 1581-1590
-
-
Small, I.1
Peeters, N.2
Legeai, F.3
Lurin, C.4
-
74
-
-
44649143352
-
Microalgal carbon-dioxide-concentrating mechanisms: Chlamydomonas inorganic carbon transporters
-
Spalding, M.H., (2008) Microalgal carbon-dioxide-concentrating mechanisms: Chlamydomonas inorganic carbon transporters. J. Exp. Bot. 59, 1463-1473.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 1463-1473
-
-
Spalding, M.H.1
-
75
-
-
0034520923
-
The rotary mechanism of ATP synthase
-
Stock, D., Gibbons, C., Arechaga, I., Leslie, A.G., and, Walker, J.E., (2000) The rotary mechanism of ATP synthase. Curr. Opin. Struct. Biol. 10, 672-679.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 672-679
-
-
Stock, D.1
Gibbons, C.2
Arechaga, I.3
Leslie, A.G.4
Walker, J.E.5
-
76
-
-
77952825427
-
Characterizing the anaerobic response of Chlamydomonas reinhardtii by quantitative proteomics
-
Terashima, M., Specht, M., Naumann, B., and, Hippler, M., (2010) Characterizing the anaerobic response of Chlamydomonas reinhardtii by quantitative proteomics. Mol. Cell Proteomics, 9, 1514-1532.
-
(2010)
Mol. Cell Proteomics
, vol.9
, pp. 1514-1532
-
-
Terashima, M.1
Specht, M.2
Naumann, B.3
Hippler, M.4
-
77
-
-
79958289657
-
The chloroplast proteome: A survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features
-
Terashima, M., Specht, M., and, Hippler, M., (2011) The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features. Curr. Genet. 57, 151-168.
-
(2011)
Curr. Genet.
, vol.57
, pp. 151-168
-
-
Terashima, M.1
Specht, M.2
Hippler, M.3
-
78
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele, I., and, Palsson, B.O., (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc. 5, 93-121.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
79
-
-
84859991534
-
Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase
-
Urzica, E.I., Adler, L.N., Page, M.D., Linster, C.L., Arbing, M.A., Casero, D., Pellegrini, M., Merchant, S.S., and, Clarke, S.G., (2012a) Impact of oxidative stress on ascorbate biosynthesis in Chlamydomonas via regulation of the VTC2 gene encoding a GDP-L-galactose phosphorylase. J. Biol. Chem. 287, 14234-14245.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14234-14245
-
-
Urzica, E.I.1
Adler, L.N.2
Page, M.D.3
Linster, C.L.4
Arbing, M.A.5
Casero, D.6
Pellegrini, M.7
Merchant, S.S.8
Clarke, S.G.9
-
80
-
-
84870706076
-
Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage
-
Urzica, E.I., Casero, D., Yamasaki, H., et al. (2012b) Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. Plant Cell, 24, 3921-3948.
-
(2012)
Plant Cell
, vol.24
, pp. 3921-3948
-
-
Urzica, E.I.1
Casero, D.2
Yamasaki, H.3
-
81
-
-
84886916898
-
Remodeling of membrane lipids in iron-starved Chlamydomonas
-
Urzica, E.I., Vieler, A., Hong-Hermesdorf, A., Page, M.D., Casero, D., Gallaher, S.D., Kropat, J., Pellegrini, M., Benning, C., and, Merchant, S.S., (2013) Remodeling of membrane lipids in iron-starved Chlamydomonas. J. Biol. Chem. 288, 30246-30258.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 30246-30258
-
-
Urzica, E.I.1
Vieler, A.2
Hong-Hermesdorf, A.3
Page, M.D.4
Casero, D.5
Gallaher, S.D.6
Kropat, J.7
Pellegrini, M.8
Benning, C.9
Merchant, S.S.10
-
82
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
Varma, A., and, Palsson, B.O., (1994) Metabolic flux balancing: basic concepts, scientific and practical use. Nat. Biotechnol. 12, 994-998.
-
(1994)
Nat. Biotechnol.
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
83
-
-
77955619699
-
An outlook on microalgal biofuels
-
Wijffels, R.H., and, Barbosa, M.J., (2010) An outlook on microalgal biofuels. Science, 329, 796-799.
-
(2010)
Science
, vol.329
, pp. 796-799
-
-
Wijffels, R.H.1
Barbosa, M.J.2
-
84
-
-
79951745716
-
IMAT: An integrative metabolic analysis tool
-
Zur, H., Ruppin, E., and, Shlomi, T., (2010) iMAT: an integrative metabolic analysis tool. Bioinformatics, 26, 3140-3142.
-
(2010)
Bioinformatics
, vol.26
, pp. 3140-3142
-
-
Zur, H.1
Ruppin, E.2
Shlomi, T.3
-
85
-
-
84896973299
-
Transforming RNA-seq data to improve the performance of prognostic gene signatures
-
Zwiener, I., Frisch, B., and, Binder, H., (2014) Transforming RNA-seq data to improve the performance of prognostic gene signatures. PLoS One, 9, e85150.
-
(2014)
PLoS One
, vol.9
, pp. e85150
-
-
Zwiener, I.1
Frisch, B.2
Binder, H.3
|