메뉴 건너뛰기




Volumn 3, Issue , 2009, Pages

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; CHLAMYDOMONAS REINHARDTII; CHLOROPHYTA; HARNESS; INSECTIVORA;

EID: 58849135386     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-3-4     Document Type: Article
Times cited : (354)

References (47)
  • 1
    • 0032503986 scopus 로고    scopus 로고
    • Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components
    • 10.1126/science.281.5374.237 9657713
    • Field CB Behrenfeld MJ Randerson JT Falkowski P Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components Science 1998, 281(5374):237-240. 10.1126/science.281.5374.237 9657713
    • (1998) Science , vol.281 , Issue.5374 , pp. 237-240
    • Field, C.B.1    Behrenfeld, M.J.2    Randerson, J.T.3    Falkowski, P.4
  • 2
    • 20444397992 scopus 로고    scopus 로고
    • Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
    • 1142472 15930493 10.1101/gr.3364705
    • Borodina I Krabben P Nielsen J Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism Genome Res 2005, 15(6):820-829. 1142472 15930493 10.1101/gr.3364705
    • (2005) Genome Res , vol.15 , Issue.6 , pp. 820-829
    • Borodina, I.1    Krabben, P.2    Nielsen, J.3
  • 3
    • 0344824417 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
    • 263729 14578455 10.1073/pnas.2235812100
    • Famili I Forster J Nielsen J Palsson BO Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network Proc Natl Acad Sci USA 2003, 100(23):13134-13139. 263729 14578455 10.1073/pnas.2235812100
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.23 , pp. 13134-13139
    • Famili, I.1    Forster, J.2    Nielsen, J.3    Palsson, B.O.4
  • 4
    • 33644829256 scopus 로고    scopus 로고
    • In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network
    • 10.1002/bit.20663
    • Heinemann M Kümmel A Ruinatscha R Panke S In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network Biotech Bioeng 2005, 92(7):850-864. 10.1002/bit.20663
    • (2005) Biotech Bioeng , vol.92 , Issue.7 , pp. 850-864
    • Heinemann, M.1    Kümmel, A.2    Ruinatscha, R.3    Panke, S.4
  • 5
    • 23944440242 scopus 로고    scopus 로고
    • Modeling Lactococcus lactis using a genome-scale flux model
    • 1185544 15982422 10.1186/1471-2180-5-39
    • Oliveira A Nielsen J Forster J Modeling Lactococcus lactis using a genome-scale flux model BMC Microbiology 2005, 5(1):39. 1185544 15982422 10.1186/1471-2180-5-39
    • (2005) BMC Microbiology , vol.5 , Issue.1 , pp. 39
    • Oliveira, A.1    Nielsen, J.2    Forster, J.3
  • 6
    • 0344328817 scopus 로고    scopus 로고
    • An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
    • 193654 12952533 10.1186/gb-2003-4-9-r54
    • Reed J Vo T Schilling C Palsson B An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) Genome Biol 2003, 4(9):R54. 193654 12952533 10.1186/gb-2003-4-9-r54
    • (2003) Genome Biol , vol.4 , Issue.9
    • Reed, J.1    Vo, T.2    Schilling, C.3    Palsson, B.4
  • 7
    • 33846015888 scopus 로고    scopus 로고
    • Analysis of Growth of Lactobacillus plantarum WCFS1 on a Complex Medium Using Genome-scale Metabolic Model
    • 10.1074/jbc.M606263200 17062565
    • Teusink B Wiersma A Molenaar D Francke C Vos WMd Siezen RJ Smid EJ Analysis of Growth of Lactobacillus plantarum WCFS1 on a Complex Medium Using Genome-scale Metabolic Model J Biol Chem 2006, 281(52):40041-40048. 10.1074/jbc.M606263200 17062565
    • (2006) J Biol Chem , vol.281 , Issue.52 , pp. 40041-40048
    • Teusink, B.1    Wiersma, A.2    Molenaar, D.3    Francke, C.4    Vos, W.Md.5    Siezen, R.J.6    Smid, E.J.7
  • 8
    • 0035812464 scopus 로고    scopus 로고
    • Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions
    • 10.1002/bit.1127
    • Burgard A Maranas C Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions Biotech Bioeng 2001, 74:364-375. 10.1002/bit.1127
    • (2001) Biotech Bioeng , vol.74 , pp. 364-375
    • Burgard, A.1    Maranas, C.2
  • 9
    • 28844474830 scopus 로고    scopus 로고
    • Flux Balance Analysis of Photoautotrophic Metabolism
    • 10.1021/bp050246d 16321043
    • Shastri AA Morgan JA Flux Balance Analysis of Photoautotrophic Metabolism Biotechnol Prog 2005, 21(6):1617-1626. 10.1021/bp050246d 16321043
    • (2005) Biotechnol Prog , vol.21 , Issue.6 , pp. 1617-1626
    • Shastri, A.A.1    Morgan, J.A.2
  • 10
    • 0242487757 scopus 로고    scopus 로고
    • Identification of a metabolic network structure representative of arthrospira (spirulina) platensis metabolism
    • 10.1002/bit.10808
    • Cogne G Gros JB Dussap CG Identification of a metabolic network structure representative of arthrospira (spirulina) platensis metabolism Biotech Bioeng 2003, 84(6):667-676. 10.1002/bit.10808
    • (2003) Biotech Bioeng , vol.84 , Issue.6 , pp. 667-676
    • Cogne, G.1    Gros, J.B.2    Dussap, C.G.3
  • 11
    • 0029616132 scopus 로고
    • Chlamydomonas reinahrdtii as the Photosynthetic Yeast
    • 10.1146/annurev.ge.29.120195.001233 8825474
    • Rochaix J-D Chlamydomonas reinahrdtii as the Photosynthetic Yeast Annual Review of Genetics 1995, 29:209-230. 10.1146/annurev.ge.29.120195.001233 8825474
    • (1995) Annual Review of Genetics , vol.29 , pp. 209-230
    • Rochaix, J.-D.1
  • 12
    • 52049100420 scopus 로고    scopus 로고
    • Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii
    • 2390595 18493048 10.1534/genetics.108.088336
    • May P Wienkoop S Kempa S Usadel B Christian N Rupprecht J Weiss J Recuenco-Munoz L Ebenhoh O Weckwerth W Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii Genetics 2008, 179(1):157-166. 2390595 18493048 10.1534/genetics.108.088336
    • (2008) Genetics , vol.179 , Issue.1 , pp. 157-166
    • May, P.1    Wienkoop, S.2    Kempa, S.3    Usadel, B.4    Christian, N.5    Rupprecht, J.6    Weiss, J.7    Recuenco-Munoz, L.8    Ebenhoh, O.9    Weckwerth, W.10
  • 14
    • 0035780978 scopus 로고    scopus 로고
    • Chlamydomonas as a Model Organism
    • 10.1146/annurev.arplant.52.1.363
    • Harris E Chlamydomonas as a Model Organism Annual Review of Plant Physiology 2001, 52:363-406. 10.1146/annurev.arplant.52.1.363
    • (2001) Annual Review of Plant Physiology , vol.52 , pp. 363-406
    • Harris, E.1
  • 16
  • 18
    • 33644877904 scopus 로고    scopus 로고
    • MetaCyc: A Multiorganism Database of Metabolic Pathways and Enzymes
    • 1347490 16381923 10.1093/nar/gkj128
    • Caspi MetaCyc: A Multiorganism Database of Metabolic Pathways and Enzymes Nucleic Acids Res 2006, 34:D511-D516. 1347490 16381923 10.1093/ nar/gkj128
    • (2006) Nucleic Acids Res , vol.34
  • 19
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • 148090 9847135 10.1093/nar/27.1.29
    • Ogata H Goto S Sato K Fujibuchi W Bono H Kanehisa M KEGG: Kyoto Encyclopedia of Genes and Genomes Nucl Acids Res 1999, 27(1):29-34. 148090 9847135 10.1093/nar/27.1.29
    • (1999) Nucl Acids Res , vol.27 , Issue.1 , pp. 29-34
    • Ogata, H.1    Goto, S.2    Sato, K.3    Fujibuchi, W.4    Bono, H.5    Kanehisa, M.6
  • 20
    • 0034697980 scopus 로고    scopus 로고
    • Predicting Subcellular Localization of Proteins based on Their N-terminal Amino Acid Sequence
    • 10.1006/jmbi.2000.3903 10891285
    • Emanuelsson O Nielsen H Brunak S Heijne Gv Predicting Subcellular Localization of Proteins based on Their N-terminal Amino Acid Sequence Journal of Molecular Biology 2000, 300:1005-1016. 10.1006/jmbi.2000.3903 10891285
    • (2000) Journal of Molecular Biology , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Heijne, Gv.4
  • 21
    • 0029915525 scopus 로고    scopus 로고
    • Computational method to predict mitochondrially imported proteins and their targeting sequences
    • 10.1111/j.1432-1033.1996.00779.x 8944766
    • Claros MG Vincens P Computational method to predict mitochondrially imported proteins and their targeting sequences Eur J Biochem 1996, 241:779-786. 10.1111/j.1432-1033.1996.00779.x 8944766
    • (1996) Eur J Biochem , vol.241 , pp. 779-786
    • Claros, M.G.1    Vincens, P.2
  • 24
    • 0000736415 scopus 로고
    • Effects of oxygen and inorganic carbon concentrations on the photosynthetic quotients of marine algae
    • 10.1007/BF00397114
    • Burris JE Effects of oxygen and inorganic carbon concentrations on the photosynthetic quotients of marine algae Marine Biology 1981, 65(3):215-219. 10.1007/BF00397114
    • (1981) Marine Biology , vol.65 , Issue.3 , pp. 215-219
    • Burris, J.E.1
  • 25
    • 0013894468 scopus 로고
    • The role and control of the glyoxylate cycle in Escherichia col
    • 1264949 5337756
    • Kornberg HL The role and control of the glyoxylate cycle in Escherichia col Biochem J 1966, 99:1-11. 1264949 5337756
    • (1966) Biochem J , vol.99 , pp. 1-11
    • Kornberg, H.L.1
  • 26
    • 0014986724 scopus 로고
    • Metabolic Role, Regulation of Synthesis, Cellular Localization, and Genetic Control of the Glyoxylate Cycle Enzymes in Neurospora crassa
    • 248342 5541006
    • Flavell RB Woodward DO Metabolic Role, Regulation of Synthesis, Cellular Localization, and Genetic Control of the Glyoxylate Cycle Enzymes in Neurospora crassa J Bacteriol 1971, 105(1):200-210. 248342 5541006
    • (1971) J Bacteriol , vol.105 , Issue.1 , pp. 200-210
    • Flavell, R.B.1    Woodward, D.O.2
  • 27
    • 0029938615 scopus 로고    scopus 로고
    • Biosynthesis of isoprenoids (carotenoids, sterols, prenyl side-chains of chlorophylls and plastoquinone) via a novel pyruvate/glyceraldehyde 3-phosphate non-mevalonate pathway in the green alga Scenedesmus obliquus
    • 1217352 8645235
    • Schwender J Seemann M Lichtenthaler HK Rohmer M Biosynthesis of isoprenoids (carotenoids, sterols, prenyl side-chains of chlorophylls and plastoquinone) via a novel pyruvate/glyceraldehyde 3-phosphate non-mevalonate pathway in the green alga Scenedesmus obliquus Biochem J 1996, 316(1):73-80. 1217352 8645235
    • (1996) Biochem J , vol.316 , Issue.1 , pp. 73-80
    • Schwender, J.1    Seemann, M.2    Lichtenthaler, H.K.3    Rohmer, M.4
  • 28
    • 0034624977 scopus 로고    scopus 로고
    • Postgerminative growth and lipid catabolism in oilseeds lacking the glyoxylate cycle
    • 25886 10805817 10.1073/pnas.97.10.5669
    • Eastmond PJ Germain V Lange PR Bryce JH Smith SM Graham IA Postgerminative growth and lipid catabolism in oilseeds lacking the glyoxylate cycle Proc Natl Acad Sci USA 2000, 97(10):5669-5674. 25886 10805817 10.1073/pnas.97.10.5669
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.10 , pp. 5669-5674
    • Eastmond, P.J.1    Germain, V.2    Lange, P.R.3    Bryce, J.H.4    Smith, S.M.5    Graham, I.A.6
  • 29
    • 17844405878 scopus 로고    scopus 로고
    • Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation
    • 1079855 15752426 10.1186/1471-2180-5-8
    • Becker S Palsson B Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation BMC Microbiology 2005, 5:1-8. 1079855 15752426 10.1186/ 1471-2180-5-8
    • (2005) BMC Microbiology , vol.5 , pp. 8
    • Becker, S.1    Palsson, B.2
  • 30
    • 3843128481 scopus 로고    scopus 로고
    • Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
    • 442145 15197165 10.1101/gr.2250904
    • Duarte NC Herrgard MJ Palsson BO Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model Genome Res 2004, 14:1298-1309. 442145 15197165 10.1101/ gr.2250904
    • (2004) Genome Res , vol.14 , pp. 1298-1309
    • Duarte, N.C.1    Herrgard, M.J.2    Palsson, B.O.3
  • 31
    • 35348934254 scopus 로고    scopus 로고
    • Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data
    • 10.1074/jbc.M703759200 17573341
    • Oh Y-K Palsson BO Park SM Schilling CH Mahadevan R Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data J Biol Chem 2007, 282(39):28791-28799. 10.1074/jbc.M703759200 17573341
    • (2007) J Biol Chem , vol.282 , Issue.39 , pp. 28791-28799
    • Oh, Y.-K.1    Palsson, B.O.2    Park, S.M.3    Schilling, C.H.4    Mahadevan, R.5
  • 32
    • 33947617349 scopus 로고    scopus 로고
    • Biodiesel from microalgae
    • 10.1016/j.biotechadv.2007.02.001
    • Chisti Y Biodiesel from microalgae Biotechnol Advances 2007, 25(3):294-306. 10.1016/j.biotechadv.2007.02.001
    • (2007) Biotechnol Advances , vol.25 , Issue.3 , pp. 294-306
    • Chisti, Y.1
  • 33
    • 0033080396 scopus 로고    scopus 로고
    • Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
    • 10.1016/S0167-7799(98)01290-6 10087604
    • Schuster S Dandekar T Fell DA Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering Trends Biotechnol 1999, 17(2):53-60. 10.1016/ S0167-7799(98)01290-6 10087604
    • (1999) Trends Biotechnol , vol.17 , Issue.2 , pp. 53-60
    • Schuster, S.1    Dandekar, T.2    Fell, D.A.3
  • 36
    • 0002771707 scopus 로고    scopus 로고
    • Regulation of Starch Biosynthesis
    • Dordrecht: Kluwer Academic Publishers Rochaix JD, Goldschmidt-Clermont M, Merchant S
    • Ball SG Regulation of Starch Biosynthesis The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas Dordrecht: Kluwer Academic Publishers Rochaix JD, Goldschmidt-Clermont M, Merchant S 1998, 549-567.
    • (1998) The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas , pp. 549-567
    • Ball, S.G.1
  • 37
    • 0000269156 scopus 로고
    • Lipids of Chlamydomonas reinhardtii. Analysis of Molecular Species and Intracellular Site(s) of Biosynthesis
    • Giroud C Gerber A Eichenberger W Lipids of Chlamydomonas reinhardtii. Analysis of Molecular Species and Intracellular Site(s) of Biosynthesis Plant Cell Physiol 1988, 29(4):587-595.
    • (1988) Plant Cell Physiol , vol.29 , Issue.4 , pp. 587-595
    • Giroud, C.1    Gerber, A.2    Eichenberger, W.3
  • 38
    • 0019801751 scopus 로고
    • Cellular and thylakoid-membrane glycolipids of Chlamydomonas reinhardtii 137+
    • 7299292
    • Janero DR Barrnett R Cellular and thylakoid-membrane glycolipids of Chlamydomonas reinhardtii 137+ J Lipid Res 1981, 22(7):1119-1125. 7299292
    • (1981) J Lipid Res , vol.22 , Issue.7 , pp. 1119-1125
    • Janero, D.R.1    Barrnett, R.2
  • 39
    • 0037047319 scopus 로고    scopus 로고
    • Photosynthesis of ATP - Electrons, Proton Pumps, Roters and Poise
    • 10.1016/S0092-8674(02)00870-X 12176312
    • Allen JF Photosynthesis of ATP - Electrons, Proton Pumps, Roters and Poise Cell 2002, 110:273-276. 10.1016/S0092-8674(02)00870-X 12176312
    • (2002) Cell , vol.110 , pp. 273-276
    • Allen, J.F.1
  • 40
    • 0033607504 scopus 로고    scopus 로고
    • Molecular Architecture of the Rotary Motor in ATP Synthase
    • 10.1126/science.286.5445.1700 10576729
    • Stock D Leslie AGW Walker JE Molecular Architecture of the Rotary Motor in ATP Synthase Science 1999, 286:1700-1705. 10.1126/ science.286.5445.1700 10576729
    • (1999) Science , vol.286 , pp. 1700-1705
    • Stock, D.1    Leslie, A.G.W.2    Walker, J.E.3
  • 41
    • 0037313750 scopus 로고    scopus 로고
    • Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network
    • 420374 12566402 10.1101/gr.234503
    • Forster J Famili I Fu P Palsson BO Nielsen J Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network Genome Research 2003, 13:244-253. 420374 12566402 10.1101/gr.234503
    • (2003) Genome Research , vol.13 , pp. 244-253
    • Forster, J.1    Famili, I.2    Fu, P.3    Palsson, B.O.4    Nielsen, J.5
  • 44
    • 0034780801 scopus 로고    scopus 로고
    • Science Needs and New Technology for Increasing Soil Carbon Sequestration
    • 10.1023/A:1017509224801
    • Metting FB Smith J Amthor J Izaurralde RC Science Needs and New Technology for Increasing Soil Carbon Sequestration Climatic Change 2001, 51(1):11-34. 10.1023/A:1017509224801
    • (2001) Climatic Change , vol.51 , Issue.1 , pp. 11-34
    • Metting, F.B.1    Smith, J.2    Amthor, J.3    Izaurralde, R.C.4
  • 46
    • 0014086660 scopus 로고
    • Replication of Chloroplast DNA in Chlamydomonas reinhardi during Vegetative Cell Cycle: Its Mode and Regulation
    • 224501 5231756 10.1073/pnas.57.5.1506
    • Chiang K-S Sueoka N Replication of Chloroplast DNA in Chlamydomonas reinhardi during Vegetative Cell Cycle: Its Mode and Regulation Proc Natl Acad Sci USA 1967, 57(5):1506-1513. 224501 5231756 10.1073/ pnas.57.5.1506
    • (1967) Proc Natl Acad Sci USA , vol.57 , Issue.5 , pp. 1506-1513
    • Chiang, K.-S.1    Sueoka, N.2
  • 47
    • 0019374048 scopus 로고
    • Fluorometric determination of DNA and RNA in Chlamydomonas using ethidium bromide
    • 10.1016/0165-022X(81)90067-1
    • Valle O Lien T Knutsen G Fluorometric determination of DNA and RNA in Chlamydomonas using ethidium bromide Journal of Biochemical and Biophysical Methods 1981, 4:271-277. 10.1016/0165-022X(81)90067-1
    • (1981) Journal of Biochemical and Biophysical Methods , vol.4 , pp. 271-277
    • Valle, O.1    Lien, T.2    Knutsen, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.