메뉴 건너뛰기




Volumn 81, Issue 4, 2015, Pages 611-624

The response of Chlamydomonas reinhardtii to nitrogen deprivation: A systems biology analysis

Author keywords

Chlamydomonas reinhardtii; metabolomics; nitrogen deprivation; proteomics; systems biology; technical advance; transcriptomics

Indexed keywords

AMIDES; AMINES; ARGININE; BIOCHEMISTRY; BIOSYNTHESIS; CARBON; ENZYMES; GENE EXPRESSION; METABOLITES; PROTEOMICS; UREA;

EID: 84922593685     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12747     Document Type: Article
Times cited : (189)

References (43)
  • 2
    • 84891519072 scopus 로고    scopus 로고
    • Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant
    • Blaby, I.K., Glaesener, A.G., Mettler, T., et al. (2013) Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. Plant Cell, 25, 4305-4323.
    • (2013) Plant Cell , vol.25 , pp. 4305-4323
    • Blaby, I.K.1    Glaesener, A.G.2    Mettler, T.3
  • 3
    • 33645000533 scopus 로고    scopus 로고
    • Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation
    • Bölling, C., and, Fiehn, O., (2005) Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation. Plant Physiol. 139, 1995-2005.
    • (2005) Plant Physiol. , vol.139 , pp. 1995-2005
    • Bölling, C.1    Fiehn, O.2
  • 4
    • 84860864006 scopus 로고    scopus 로고
    • Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas
    • Boyle, N.R., Page, M.D., Liu, B., et al. (2012) Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas. J. Biol. Chem. 287, 15811-15825.
    • (2012) J. Biol. Chem. , vol.287 , pp. 15811-15825
    • Boyle, N.R.1    Page, M.D.2    Liu, B.3
  • 5
    • 79957609529 scopus 로고    scopus 로고
    • Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps
    • Castruita, M., Casero, D., Karpowicz, S.J., et al. (2011) Systems biology approach in Chlamydomonas reveals connections between copper nutrition and multiple metabolic steps. Plant Cell, 23, 1273-1292.
    • (2011) Plant Cell , vol.23 , pp. 1273-1292
    • Castruita, M.1    Casero, D.2    Karpowicz, S.J.3
  • 7
    • 0002852478 scopus 로고    scopus 로고
    • Nitrogen assimilation and its regulation
    • (Rochaix, J.D. Goldschmidt-Clermont, M. and Merchant, S. eds). the Netherlands: Springer
    • Fernández, E., Galván, A., and, Quesada, A., (1998) Nitrogen assimilation and its regulation. In The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas (, Rochaix, J.D., Goldschmidt-Clermont, M., and, Merchant, S., eds). the Netherlands: Springer, pp. 637-659.
    • (1998) The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas , pp. 637-659
    • Fernández, E.1    Galván, A.2    Quesada, A.3
  • 8
    • 66449107606 scopus 로고    scopus 로고
    • Chapter 3 - Nitrogen assimilation and its regulation. in
    • 2nd edn. (Harris, E.H., Stern, D.B. and Witman, G.B., eds). London: Academic Press
    • Fernández, E., Llamas, A., and, Galván, A., (2009) Chapter 3-Nitrogen assimilation and its regulation. In The Chlamydomonas Sourcebook, 2nd edn. (Harris, E.H., Stern, D.B. and Witman, G.B., eds). London: Academic Press, pp. 69-113.
    • (2009) The Chlamydomonas Sourcebook , pp. 69-113
    • Fernández, E.1    Llamas, A.2    Galván, A.3
  • 9
    • 84899936462 scopus 로고    scopus 로고
    • The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii
    • Goodenough, U., Blaby, I., Casero, D., et al. (2014) The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii. Eukaryot. Cell 13, 591-613.
    • (2014) Eukaryot. Cell , vol.13 , pp. 591-613
    • Goodenough, U.1    Blaby, I.2    Casero, D.3
  • 10
    • 82555193810 scopus 로고    scopus 로고
    • Structural correlates of cytoplasmic and chloroplast lipid body synthesis in Chlamydomonas reinhardtii and stimulation of lipid body production with acetate boost
    • Goodson, C., Roth, R., Wang, Z.T., and, Goodenough, U., (2011) Structural correlates of cytoplasmic and chloroplast lipid body synthesis in Chlamydomonas reinhardtii and stimulation of lipid body production with acetate boost. Eukaryot. Cell 10, 1592-1606.
    • (2011) Eukaryot. Cell , vol.10 , pp. 1592-1606
    • Goodson, C.1    Roth, R.2    Wang, Z.T.3    Goodenough, U.4
  • 11
    • 32644486441 scopus 로고    scopus 로고
    • Lipids and lipid metabolism in eukaryotic algae
    • Guschina, I.A., and, Harwood, J.L., (2006) Lipids and lipid metabolism in eukaryotic algae. Prog. Lipid Res. 45, 160-186.
    • (2006) Prog. Lipid Res. , vol.45 , pp. 160-186
    • Guschina, I.A.1    Harwood, J.L.2
  • 13
    • 84893701507 scopus 로고    scopus 로고
    • A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement
    • He, R., Salvato, F., Park, J.-J., et al. (2014) A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. BMC Plant Biol. 14, 46.
    • (2014) BMC Plant Biol. , vol.14 , pp. 46
    • He, R.1    Salvato, F.2    Park, J.-J.3
  • 14
    • 0016641179 scopus 로고
    • Metabolic control of urea catabolism in Chlamydomonas reinhardtii and Chlorella pyrenoidosa
    • Hodson, R.C., Williams, S.K. 2nd, and, Davidson, W.R. Jr, (1975) Metabolic control of urea catabolism in Chlamydomonas reinhardtii and Chlorella pyrenoidosa. J. Bacteriol. 121, 1022-1035.
    • (1975) J. Bacteriol. , vol.121 , pp. 1022-1035
    • Hodson, R.C.1    Williams, S.K.2    Davidson, W.R.3
  • 15
    • 84873087167 scopus 로고    scopus 로고
    • Characterization of microalgal lipid feedstock by direct-infusion FT-ICR mass spectrometry
    • Holguin, F.O., and, Schaub, T., (2013) Characterization of microalgal lipid feedstock by direct-infusion FT-ICR mass spectrometry. Algal Res. 2, 43-50.
    • (2013) Algal Res. , vol.2 , pp. 43-50
    • Holguin, F.O.1    Schaub, T.2
  • 16
    • 43549102657 scopus 로고    scopus 로고
    • Microalgal triacylglycerols as feedstocks for biofuel production: Perspectives and advances
    • Hu, Q., Sommerfeld, M., Jarvis, E., Ghirardi, M., Posewitz, M., Seibert, M., and, Darzins, A., (2008) Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. Plant J. 54, 621-639.
    • (2008) Plant J. , vol.54 , pp. 621-639
    • Hu, Q.1    Sommerfeld, M.2    Jarvis, E.3    Ghirardi, M.4    Posewitz, M.5    Seibert, M.6    Darzins, A.7
  • 17
    • 43649098283 scopus 로고    scopus 로고
    • High quality metabolomic data for Chlamydomonas reinhardtii
    • Lee, D.Y., and, Fiehn, O., (2008) High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods, 4, 7.
    • (2008) Plant Methods , vol.4 , pp. 7
    • Lee, D.Y.1    Fiehn, O.2
  • 18
    • 84867161579 scopus 로고    scopus 로고
    • System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium
    • Lee, D.Y., Park, J.-J., Barupal, D.K., and, Fiehn, O., (2012) System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium. Mol. Cell Proteomics 11, 973-988.
    • (2012) Mol. Cell Proteomics , vol.11 , pp. 973-988
    • Lee, D.Y.1    Park, J.-J.2    Barupal, D.K.3    Fiehn, O.4
  • 19
    • 35648990109 scopus 로고    scopus 로고
    • Large-scale biodiesel production from microalga Chlorella protothecoides through heterotrophic cultivation in bioreactors
    • Li, X., Xu, H., and, Wu, Q., (2007) Large-scale biodiesel production from microalga Chlorella protothecoides through heterotrophic cultivation in bioreactors. Biotechnol. Bioeng. 98, 764-771.
    • (2007) Biotechnol. Bioeng. , vol.98 , pp. 764-771
    • Li, X.1    Xu, H.2    Wu, Q.3
  • 20
    • 0036844771 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli
    • Lilly, J.W., Maul, J.E., and, Stern, D.B., (2002) The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell, 14, 2681-2706.
    • (2002) Plant Cell , vol.14 , pp. 2681-2706
    • Lilly, J.W.1    Maul, J.E.2    Stern, D.B.3
  • 21
    • 27244453757 scopus 로고    scopus 로고
    • Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtii
    • Lohr, M., Im, C.-S., and, Grossman, A.R., (2005) Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtii. Plant Physiol. 138, 490-515.
    • (2005) Plant Physiol. , vol.138 , pp. 490-515
    • Lohr, M.1    Im, C.-S.2    Grossman, A.R.3
  • 22
    • 0016796673 scopus 로고
    • Gametic differentiation in Chlamydomonas reinhardtii. I. Production of gametes and their fine structure
    • Martin, N.C., and, Goodenough, U.W., (1975) Gametic differentiation in Chlamydomonas reinhardtii. I. Production of gametes and their fine structure. J. Cell Biol. 67, 587-605.
    • (1975) J. Cell Biol. , vol.67 , pp. 587-605
    • Martin, N.C.1    Goodenough, U.W.2
  • 23
    • 70349505956 scopus 로고    scopus 로고
    • Microalgae for biodiesel production and other applications: A review
    • Mata, T.M., Martins, A.A., and, Caetano, N.S., (2010) Microalgae for biodiesel production and other applications: a review. Renew. Sust. Energ. Rev. 14, 217-232.
    • (2010) Renew. Sust. Energ. Rev. , vol.14 , pp. 217-232
    • Mata, T.M.1    Martins, A.A.2    Caetano, N.S.3
  • 24
    • 52049100420 scopus 로고    scopus 로고
    • Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii
    • May, P., Wienkoop, S., Kempa, S., et al. (2008) Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics, 179, 157-166.
    • (2008) Genetics , vol.179 , pp. 157-166
    • May, P.1    Wienkoop, S.2    Kempa, S.3
  • 25
    • 35348896591 scopus 로고    scopus 로고
    • The Chlamydomonas genome reveals the evolution of key animal and plant functions
    • Merchant, S.S., Prochnik, S.E., Vallon, O., et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 318, 245-250.
    • (2007) Science , vol.318 , pp. 245-250
    • Merchant, S.S.1    Prochnik, S.E.2    Vallon, O.3
  • 26
    • 78649786133 scopus 로고    scopus 로고
    • Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism
    • Miller, R., Wu, G., Deshpande, R.R., et al. (2010) Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism. Plant Physiol. 154, 1737-1752.
    • (2010) Plant Physiol. , vol.154 , pp. 1737-1752
    • Miller, R.1    Wu, G.2    Deshpande, R.R.3
  • 27
    • 75649112263 scopus 로고    scopus 로고
    • RNA interference silencing of a major lipid droplet protein affects lipid droplet size in Chlamydomonas reinhardtii
    • Moellering, E.R., and, Benning, C., (2010) RNA interference silencing of a major lipid droplet protein affects lipid droplet size in Chlamydomonas reinhardtii. Eukaryot. Cell 9, 97-106.
    • (2010) Eukaryot. Cell , vol.9 , pp. 97-106
    • Moellering, E.R.1    Benning, C.2
  • 28
    • 84856211888 scopus 로고    scopus 로고
    • Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169
    • Msanne, J., Xu, D., Konda, A.R., Casas-Mollano, J.A., Awada, T., Cahoon, E.B., and, Cerutti, H., (2012) Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169. Phytochemistry, 75, 50-59.
    • (2012) Phytochemistry , vol.75 , pp. 50-59
    • Msanne, J.1    Xu, D.2    Konda, A.R.3    Casas-Mollano, J.A.4    Awada, T.5    Cahoon, E.B.6    Cerutti, H.7
  • 29
    • 84893661298 scopus 로고    scopus 로고
    • Lack of isocitrate lyase in Chlamydomonas leads to changes in carbon metabolism and in the response to oxidative stress under mixotrophic growth
    • Plancke, C., Vigeolas, H., Höhner, R., et al. (2014) Lack of isocitrate lyase in Chlamydomonas leads to changes in carbon metabolism and in the response to oxidative stress under mixotrophic growth. Plant J. 77, 404-417.
    • (2014) Plant J. , vol.77 , pp. 404-417
    • Plancke, C.1    Vigeolas, H.2    Höhner, R.3
  • 30
    • 84901420221 scopus 로고    scopus 로고
    • Nitrogen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism
    • Schmollinger, S., Mühlhaus, T., Boyle, N.R., et al. (2014) Nitrogen-sparing mechanisms in Chlamydomonas affect the transcriptome, the proteome, and photosynthetic metabolism. Plant Cell, 26, 1410-1435.
    • (2014) Plant Cell , vol.26 , pp. 1410-1435
    • Schmollinger, S.1    Mühlhaus, T.2    Boyle, N.R.3
  • 31
    • 0027294652 scopus 로고
    • Isolation of the Chlamydomonas regulatory gene NIT2 by transposon tagging
    • Schnell, R.A., and, Lefebvre, P.A., (1993) Isolation of the Chlamydomonas regulatory gene NIT2 by transposon tagging. Genetics, 134, 737-747.
    • (1993) Genetics , vol.134 , pp. 737-747
    • Schnell, R.A.1    Lefebvre, P.A.2
  • 32
    • 0016806322 scopus 로고
    • The induction of allophanate lyase during the vegetative cell cycle in light-synchronized cultures of Chlamydomonas reinhardtii
    • Semler, B.L., Hodson, R.C., Williams Ii, S.K., and, Howell, S.H., (1975) The induction of allophanate lyase during the vegetative cell cycle in light-synchronized cultures of Chlamydomonas reinhardtii. Biochim. Biophys. Acta 399, 71-78.
    • (1975) Biochim. Biophys. Acta , vol.399 , pp. 71-78
    • Semler, B.L.1    Hodson, R.C.2    Williams, S.K.3    Howell, S.H.4
  • 33
    • 0015243249 scopus 로고
    • Conservation and degradation of cytoplasmic and chloroplast ribosomes in Chlamydomonas reinhardtii
    • Siersma, P.W., and, Chiang, K.-S., (1971) Conservation and degradation of cytoplasmic and chloroplast ribosomes in Chlamydomonas reinhardtii. J. Mol. Biol. 58, 167-185.
    • (1971) J. Mol. Biol. , vol.58 , pp. 167-185
    • Siersma, P.W.1    Chiang, K.-S.2
  • 34
    • 34547130538 scopus 로고    scopus 로고
    • Expression of β-carotene hydroxylase gene (crtR-B) from the green alga Haematococcus pluvialis in chloroplasts of Chlamydomonas reinhardtii
    • Tan, C.-P., Zhao, F.-Q., Su, Z.-L., Liang, C.-W., and, Qin, S., (2007) Expression of β-carotene hydroxylase gene (crtR-B) from the green alga Haematococcus pluvialis in chloroplasts of Chlamydomonas reinhardtii. J. Appl. Phycol. 19, 347-355.
    • (2007) J. Appl. Phycol. , vol.19 , pp. 347-355
    • Tan, C.-P.1    Zhao, F.-Q.2    Su, Z.-L.3    Liang, C.-W.4    Qin, S.5
  • 35
    • 0036010676 scopus 로고    scopus 로고
    • Regulation by polyamines of ornithine decarboxylase activity and cell division in the unicellular green alga Chlamydomonas reinhardtii
    • Theiss, C., Bohley, P., and, Voigt, J., (2002) Regulation by polyamines of ornithine decarboxylase activity and cell division in the unicellular green alga Chlamydomonas reinhardtii. Plant Physiol. 128, 1470-1479.
    • (2002) Plant Physiol. , vol.128 , pp. 1470-1479
    • Theiss, C.1    Bohley, P.2    Voigt, J.3
  • 36
    • 0034016658 scopus 로고    scopus 로고
    • Subcellular localization and light-dark control of ornithine decarboxylase in the unicellular green alga Chlamydomonas reinhardtii
    • Voigt, J., Deinert, B., and, Bohley, P., (2000) Subcellular localization and light-dark control of ornithine decarboxylase in the unicellular green alga Chlamydomonas reinhardtii. Physiol. Plant. 108, 353-360.
    • (2000) Physiol. Plant. , vol.108 , pp. 353-360
    • Voigt, J.1    Deinert, B.2    Bohley, P.3
  • 37
    • 73349097525 scopus 로고    scopus 로고
    • Algal lipid bodies: Stress induction, purification, and biochemical characterization in wild-type and starchless Chlamydomonas reinhardtii
    • Wang, Z.T., Ullrich, N., Joo, S., Waffenschmidt, S., and, Goodenough, U., (2009) Algal lipid bodies: stress induction, purification, and biochemical characterization in wild-type and starchless Chlamydomonas reinhardtii. Eukaryot. Cell 8, 1856-1868.
    • (2009) Eukaryot. Cell , vol.8 , pp. 1856-1868
    • Wang, Z.T.1    Ullrich, N.2    Joo, S.3    Waffenschmidt, S.4    Goodenough, U.5
  • 38
    • 84862923173 scopus 로고    scopus 로고
    • Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering
    • Wang, H., Alvarez, S., and, Hicks, L.M., (2012) Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering. J. Proteome Res. 11, 487-501.
    • (2012) J. Proteome Res. , vol.11 , pp. 487-501
    • Wang, H.1    Alvarez, S.2    Hicks, L.M.3
  • 39
    • 84896768677 scopus 로고    scopus 로고
    • Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profiling
    • Wase, N., Black, P.N., Stanley, B.A., and, DiRusso, C.C., (2014) Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profiling. J. Proteome Res. 13, 1373-1396.
    • (2014) J. Proteome Res. , vol.13 , pp. 1373-1396
    • Wase, N.1    Black, P.N.2    Stanley, B.A.3    Dirusso, C.C.4
  • 40
    • 0018894446 scopus 로고
    • Degradation of pyrimidines and pyrimidine analogs - Pathways and mutual influences
    • Wasternack, C., (1980) Degradation of pyrimidines and pyrimidine analogs-Pathways and mutual influences. Pharmacol. Ther. 8, 629-651.
    • (1980) Pharmacol. Ther. , vol.8 , pp. 629-651
    • Wasternack, C.1
  • 41
    • 79959871745 scopus 로고    scopus 로고
    • The biochemistry of nitrogen mobilization: Purine ring catabolism
    • Werner, A.K., and, Witte, C.-P., (2011) The biochemistry of nitrogen mobilization: purine ring catabolism. Trends Plant Sci. 16, 381-387.
    • (2011) Trends Plant Sci. , vol.16 , pp. 381-387
    • Werner, A.K.1    Witte, C.-P.2
  • 42
    • 77952528150 scopus 로고    scopus 로고
    • Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses
    • Wienkoop, S., Weiss, J., May, P., et al. (2010) Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Mol. BioSyst. 6, 1018-1031.
    • (2010) Mol. BioSyst. , vol.6 , pp. 1018-1031
    • Wienkoop, S.1    Weiss, J.2    May, P.3
  • 43
    • 77956807185 scopus 로고    scopus 로고
    • Increased lipid accumulation in the Chlamydomonas reinhardtii sta7-10 starchless isoamylase mutant and increased carbohydrate synthesis in complemented strains
    • Work, V.H., Radakovits, R., Jinkerson, R.E., Meuser, J.E., Elliott, L.G., Vinyard, D.J., Laurens, L.M.L., Dismukes, G.C., and, Posewitz, M.C., (2010) Increased lipid accumulation in the Chlamydomonas reinhardtii sta7-10 starchless isoamylase mutant and increased carbohydrate synthesis in complemented strains. Eukaryot. Cell 9, 1251-1261.
    • (2010) Eukaryot. Cell , vol.9 , pp. 1251-1261
    • Work, V.H.1    Radakovits, R.2    Jinkerson, R.E.3    Meuser, J.E.4    Elliott, L.G.5    Vinyard, D.J.6    Laurens, L.M.L.7    Dismukes, G.C.8    Posewitz, M.C.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.