Real-time measurement and correction of both B0 changes and subject motion in diffusion tensor imaging using a double volumetric navigated (DvNav) sequence

NeuroImage

Volumn 126, Issue , 2016, Pages 60-71

  Alhamud, A ^a   Taylor, Paul A ^a,b   van der Kouwe, Andre J W ^c,d   Meintjes, Ernesta M ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

^b AFRICAN INSTITUTE FOR MATHEMATICAL SCIENCES   (South Africa)

^c MASSACHUSETTS GENERAL HOSPITAL   (United States)

^d HARVARD MEDICAL SCHOOL   (United States)

Author keywords

B0 correction; Diffusion tensor imaging (DTI); Double volumetric navigators (DvNav); Navigated diffusion sequence (vNav); The first order shim (linear gradients); Zero order shim (frequency)

Indexed keywords

ARTICLE; ARTIFACT REDUCTION; DIFFUSION TENSOR IMAGING; HUMAN; IMAGING PHANTOM; INTERMETHOD COMPARISON; LINEAR SYSTEM; MEASUREMENT ACCURACY; MOTION; NEUROIMAGING; NOISE REDUCTION; NORMAL HUMAN; PRIORITY JOURNAL; SIGNAL NOISE RATIO; THREE DIMENSIONAL IMAGING; VALIDATION STUDY; ADULT; ANATOMY AND HISTOLOGY; BRAIN; ECHO PLANAR IMAGING; MALE; MOVEMENT (PHYSIOLOGY); PROCEDURES; STANDARDS;

ADULT; BRAIN; DIFFUSION TENSOR IMAGING; ECHO-PLANAR IMAGING; HUMANS; MALE; MOVEMENT;

EID: 84949211725     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2015.11.022     Document Type: Article

References (58)

1. Aksoy M., Forman C., Straka M., Skare S., Holdsworth S., Hornegger J., Bammer R. Real-time optical motion correction for diffusion tensor imaging. Magn. Reson. Med. 2011, 66:366-378.
2. Alhamud A., Hess A.T., Tisdall M.D., Meintjes E.M., van der Kouwe A.J. Implementation of real time motion correction in diffusion tensor imaging. Proceedings of the 19th Annual Meeting of ISMRM; May; Montreal, Canada 2011.
3. Alhamud A., Tisdall M.D., Hess A.T., Hasan K.M., Meintjes E.M., van der Kouwe A.J. Volumetric navigators for real-time motion correction in diffusion tensor imaging. Magn. Reson. Med. 2012, 68:1097-1108.
4. Alhamud A., Taylor P.A., Laughton B., van der Kouwe A.J., Meintjes E.M. Motion artifact reduction in pediatric diffusion tensor imaging using fast prospective correction. J. Magn. Reson. Imaging 2015, 41:1353-1364.
5. Andersson J.L., Skare S., Ashburner J. How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. Neuroimage 2003, 20:870-888.
6. Assaf Y., Cohen Y. Structural information in neuronal tissue as revealed by q-space diffusion NMR spectroscopy of metabolites in bovine optic nerve. NMR Biomed. 1999, 12:335-344.
7. Bammer R., Auer M., Keeling S.L., Augustin M., Stables L.A., Prokesch R.W., Stollberger R., Moseley M.E., Fazekas F. Diffusion tensor imaging using single-shot SENSE-EPI. Magn. Reson. Med. 2002, 48:128-136.
8. Basser P.J., Mattiello J., LeBihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 1994, 66:259.
9. Behrens T., Johansen-Berg H., Woolrich M., Smith S., Wheeler-Kingshott C., Boulby P., Barker G., Sillery E., Sheehan K., Ciccarelli O. Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat. Neurosci. 2003, 6:750-757.
10. Benner T., van der Kouwe A.J., Kirsch J.E., Sorensen A.G. Real-time RF pulse adjustment for B0 drift correction. Magn. Reson. Med. 2006, 56:204-209.
11. Benner T., van der Kouwe A.J., Sorensen A.G. Diffusion imaging with prospective motion correction and reacquisition. Magn. Reson. Med. 2011, 66:154-167.
12. Bennett I.J., Rypma B. Advances in functional neuroanatomy: a review of combined DTI and fMRI studies in healthy younger and older adults. Neurosci. Biobehav. Rev. 2013, 37:1201-1210.
13. Bhat H., Tisdall M.D., van der Kouwe A.J.W., Feiweier T., Heberlein K. EPI navigator based prospective motion correction technique for diffusion neuroimaging. Proceedings of the 19th Annual Meeting of ISMRM; May; Melbourne, Australia 2012.
14. Bhat H., Cauley S., Tisdall M.D., Witzel T., Setsompop K., van der Kouwe A.J.W., Heberlein K. Prospective motion correction based on ultra-fast whole head navigators acquired with multi-band EPI. ISMRM Workshop on Motion Correction in MRI; July; Tromsø, Norway 2014.
15. Buonocore M.H., Gao L. Ghost artifact reduction for echo planar imaging using image phase correction. Magn. Reson. Med. 1997, 38:89-100.
16. Cox R.W. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 1996, 29:162-173.
17. El-Sharkawy A.M., Schär M., Bottomley P.A., Atalar E. Monitoring and correcting spatio-temporal variations of the MR scanner's static magnetic field. MAGMA 2006, 19:223-236.
18. Engelbrecht V., Scherer A., Rassek M., Witsack H.J., Modder U. Diffusion-weighted MR imaging in the brain in children: findings in the normal brain and in the brain with white matter diseases 1. Radiology 2002, 222:410-418.
19. Foerster B.U., Tomasi D., Caparelli E.C. Magnetic field shift due to mechanical vibration in functional magnetic resonance imaging. Magn. Reson. Med. 2005, 54:1261-1267.
20. Hasan K.M., Walimuni I.S., Abid H., Frye R.E., Ewing-Cobbs L., Wolinsky J.S., Narayana P.A. Multimodal quantitative magnetic resonance imaging of thalamic development and aging across the human lifespan: implications to neurodegeneration in multiple sclerosis. J. Neurosci. 2011, 31:16826-16832.
21. Hess A.T., Dylan Tisdall M., Andronesi O.C., Meintjes E.M., van der Kouwe A.J. Real-time motion and B0 corrected single voxel spectroscopy using volumetric navigators. Magn. Reson. Med. 2011, 66:314-323.
22. Holland D., Kuperman J.M., Dale A.M. Efficient correction of inhomogeneous static magnetic field-induced distortion in echo planar imaging. Neuroimage 2010, 50:175-183.
23. Huang H., Ceritoglu C., Li X., Qiu A., Miller M.I., van Zijl P.C., Mori S. Correction of B0 susceptibility induced distortion in diffusion-weighted images using large-deformation diffeomorphic metric mapping. Magn. Reson. Imaging 2008, 26:1294-1302.
24. Irfanoglu M.O., Walker L., Sarlls J., Marenco S., Pierpaoli C. Effects of image distortions originating from susceptibility variations and concomitant fields on diffusion MRI tractography results. Neuroimage 2012, 61:275-288.
25. Itahashi T., Yamada T., Nakamura M., Watanabe H., Yamagata B., Jimbo D., Shioda S., Kuroda M., Toriizuka K., Kato N. Linked alterations in gray and white matter morphology in adults with high-functioning autism spectrum disorder: a multimodal brain imaging study. NeuroImage: Clinical 2015, 7:155-169.
26. Jenkinson M. Fast, automated, N-dimensional phase-unwrapping algorithm. Magn. Reson. Med. 2003, 49:193-197.
27. Jezzard P., Balaban R.S. Correction for geometric distortion in echo planar images from B0 field variations. Magn. Reson. Med. 1995, 34:65-73.
28. Keating B., Ernst T. Real-time dynamic frequency and shim correction for single-voxel magnetic resonance spectroscopy. Magn. Reson. Med. 2012, 68:1339-1345.
29. Kober T., Gruetter R., Krueger G. Prospective and retrospective motion correction in diffusion magnetic resonance imaging of the human brain. Neuroimage 2012, 59:389-398.
30. Kybic J., Thévenaz P., Nirkko A., Unser M. Unwarping of unidirectionally distorted EPI images. IEEE Trans. Med. Imaging 2000, 19:80-93.
31. Le Bihan D., Poupon C., Amadon A., Lethimonnier F. Artifacts and pitfalls in diffusion MRI. J. Magn. Reson. Imaging 2006, 24:478-488.
32. Lee S.K., Tan E.T., Govenkar A., Hancu I. Dynamic slice-dependent shim and center frequency update in 3T breast diffusion weighted imaging. Magn. Reson. Med. 2014, 71:1813-1818.
33. Miller J.H., McKinstry R.C., Philip J.V., Mukherjee P., Neil J.J. Diffusion-tensor MR imaging of normal brain maturation: a guide to structural development and myelination. Am. J. Roentgenol. 2003, 180:851-859.
34. Morrell G., Spielman D. Dynamic shimming for multi-slice magnetic resonance imaging. Magn. Reson. Med. 1997, 38:477-483.
35. Mukherjee P., Miller J.H., Shimony J.S., Conturo T.E., Lee B.C., Almli C.R., McKinstry R.C. Normal brain maturation during childhood: developmental trends characterized with diffusion-tensor MR imaging. Radiology 2001, 221:349-358.
36. Noriuchi M., Kikuchi Y., Yoshiura T., Kira R., Shigeto H., Hara T., Tobimatsu S., Kamio Y. Altered white matter fractional anisotropy and social impairment in children with autism spectrum disorder. Brain Res. 2010, 1362:141-149.
37. Pavuluri M.N., Yang S., Kamineni K., Passarotti A.M., Srinivasan G., Harral E.M., Sweeney J.A., Zhou X.J. Diffusion tensor imaging study of white matter fiber tracts in pediatric bipolar disorder and attention-deficit/hyperactivity disorder. Biol. Psychiatry 2009, 65:586-593.
38. Pfeuffer J., de Moortele V., Ugurbil K., Hu X., Glover G.H. Correction of physiologically induced global off-resonance effects in dynamic echo-planar and spiral functional imaging. Magn. Reson. Med. 2002, 47:344-353.
39. Pierpaoli C., Walker L., Irfanoglu M., Barnett A., Basser P., Chang L., Koay C., Pajevic S., Rohde G., Sarlls J. TORTOISE: an integrated software package for processing of diffusion MRI data. Book TORTOISE: An Integrated Software Package for Processing of Diffusion MRI Data 2010, 18:1597.
40. Pruessmann K.P., Weiger M., Scheidegger M.B., Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn. Reson. Med. 1999, 42:952-962.
41. Qiu D., Tan L.-H., Zhou K., Khong P.-L. Diffusion tensor imaging of normal white matter maturation from late childhood to young adulthood: voxel-wise evaluation of mean diffusivity, fractional anisotropy, radial and axial diffusivities, and correlation with reading development. Neuroimage 2008, 41:223-232.
42. Reese T., Heid O., Weisskoff R., Wedeen V. Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn. Reson. Med. 2003, 49:177-182.
43. Rohde G., Barnett A., Basser P., Marenco S., Pierpaoli C. Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn. Reson. Med. 2004, 51:103-114.
44. Ruthotto L., Kugel H., Olesch J., Fischer B., Modersitzki J., Burger M., Wolters C. Diffeomorphic susceptibility artifact correction of diffusion-weighted magnetic resonance images. Phys. Med. Biol. 2012, 57:5715.
45. Schmithorst V.J., Wilke M., Dardzinski B.J., Holland S.K. Correlation of white matter diffusivity and anisotropy with age during childhood and adolescence: a cross-sectional diffusion-tensor MR imaging study. Radiology 2002, 222:212-218.
46. Smith S.M., Jenkinson M., Woolrich M.W., Beckmann C.F., Behrens T.E., Johansen-Berg H., Bannister P.R., De Luca M., Drobnjak I., Flitney D.E. Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage 2004, 23:S208-S219.
47. Snook L., Paulson L.-A., Roy D., Phillips L., Beaulieu C. Diffusion tensor imaging of neurodevelopment in children and young adults. Neuroimage 2005, 26:1164-1173.
48. Staempfli P., Reischauer C., Jaermann T., Valavanis A., Kollias S., Boesiger P. Combining fMRI and DTI: a framework for exploring the limits of fMRI-guided DTI fiber tracking and for verifying DTI-based fiber tractography results. Neuroimage 2008, 39:119-126.
49. Studholme C., Constable R.T., Duncan J.S. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model. IEEE Trans. Med. Imaging 2000, 19:1115-1127.
50. Tao R., Fletcher P.T., Gerber S., Whitaker R.T. A variational image-based approach to the correction of susceptibility artifacts in the alignment of diffusion weighted and structural MRI. Information Processing in Medical Imaging 2009, 664-675. Springer.
51. Taylor P.A., Alhamud A., van der Kouwe A.J., Saleh M.G., Laughton B., Meintjes E.M. A comparison of combined acquisition and processing methods for DTI: a pediatric study. OHBM June; Hawaii, USA 2015.
52. Thesen S., Heid O., Mueller E., Schad L.R. Prospective acquisition correction for head motion with image-based tracking for real-time fMRI. Magn. Reson. Med. 2000, 44:457-465.
53. Tisdall M.D., Hess A.T., Reuter M., Meintjes E.M., Fischl B., van der Kouwe A.J. Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI. Magn. Reson. Med. 2012, 68:389-399.
54. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 2002, 48:577-582.
55. van der Kouwe A.J., Benner T., Salat D.H., Fischl B. Brain morphometry with multiecho MPRAGE. Neuroimage 2008, 40:559-569.
56. Ward H.A., Riederer S.J., Jack C.R. Real-time autoshimming for echo planar timecourse imaging. Magn. Reson. Med. 2002, 48:771-780.
57. Wedeen V.J., Hagmann P., Tseng W.Y.I., Reese T.G., Weisskoff R.M. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 2005, 54:1377-1386.
58. Wu M., Chang L.-C., Walker L., Lemaitre H., Barnett A.S., Marenco S., Pierpaoli C. Comparison of EPI distortion correction methods in diffusion tensor MRI using a novel framework. Medical Image Computing and Computer-assisted Intervention 2008, 11:321-329.