Diffeomorphic susceptibility artifact correction of diffusion-weighted magnetic resonance images

Physics in Medicine and Biology

Volumn 57, Issue 18, 2012, Pages 5715-5731

  Ruthotto, L ^a,b   Kugel, H ^b   Olesch, J ^a,c   Fischer, B ^a,c   Modersitzki, J ^a   Burger, M ^b   Wolters, C H ^b  

^a UNIVERSITY OF LÜBECK   (Germany)

^b UNIVERSITY OF MÜNSTER   (Germany)

^c FRAUNHOFER MEVIS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN SCAN; CARTESIAN SYSTEMS; CLINICAL SETTINGS; CORRECTION ALGORITHMS; DATA SETS; DIFFEOMORPHIC TRANSFORMATION; DIFFUSION WEIGHTED IMAGES; DIFFUSION WEIGHTED IMAGING; DIFFUSION-WEIGHTED MAGNETIC RESONANCE; DIFFUSION-WEIGHTED MAGNETIC RESONANCE IMAGING; DISTORTION MODEL; ECHO PLANAR IMAGING; GEOMETRIC TRANSFORMATIONS; GEOMETRICAL DISTORTION; GRADIENT ECHO; HIGH SENSITIVITY; IMAGE DEGRADATION; INTENSITY MODULATIONS; MAGNETIC FIELD INHOMOGENEITIES; MR IMAGES; REGULARIZATION PARAMETERS; REGULARIZATION SCHEMES; RIGID REGISTRATION; SINGLE-SHOT; SMALL PERTURBATIONS; SOFT TISSUE; SPATIAL ENCODING; SUSCEPTIBILITY ARTIFACTS; ULTRA-FAST; VARIATIONAL APPROACHES; VARIATIONAL IMAGE REGISTRATION;

ALGORITHMS; DEGRADATION; DIFFUSION; DIFFUSION TENSOR IMAGING; ENCODING (SYMBOLS); MAGNETIC FIELDS; MAGNETIC RESONANCE IMAGING; MAGNETIC SUSCEPTIBILITY; MATHEMATICAL TRANSFORMATIONS; TENSORS; TISSUE;

IMAGE FUSION;

ARTICLE; ARTIFACT; DIFFUSION WEIGHTED IMAGING; IMAGE PROCESSING; METHODOLOGY;

ARTIFACTS; DIFFUSION MAGNETIC RESONANCE IMAGING; IMAGE PROCESSING, COMPUTER-ASSISTED;

EID: 84866326392     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/57/18/5715     Document Type: Article

References (60)

1. Andersson J, Hutton C, Ashburner J, Turner R and Friston K 2001 Modeling geometric deformations in EPI time series Neuroimage 13 903-19 (Pubitemid 32848335)
2. Andersson J, Skare S and Ashburner J 2003 How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging Neuroimage 20 870-88 (Pubitemid 37268110)
3. Atkinson D, Porter D, Hill D, Calamante F and Conelly A 2000 Sampling and reconstruction effects due to motion in diffusion-weighted interleaved echo planar imaging Magn. Reson. Med. 44 101-9 (Pubitemid 30439844)
4. Basser P, Mattiello J and LeBihan D 1994 MR diffusion tensor spectroscopy and imaging Biophys. J. 66 259-67 (Pubitemid 24016507)
5. Bergui M, Zhong J, Bradac G and Sales S 2011 Diffusion-weighted images of intracranial cyst-like lesions Neuroradiology 43 824-9
6. Bodammer N, Kaufmann J, Kanowski M and Tempelmann C 2004 Eddy current correction in diffusion-weighted imaging using pairs of images acquired with opposite diffusion gradient polarity Magn. Reson. Med. 51 188-93 (Pubitemid 38095717)
7. Burger M, Modersitzki J and Ruthotto L 2012 A hyperelastic regularization energy for image registration SIAM J. Sci. Comput. at press
8. Chang H and Fitzpatrick J 1992 A technique for accurate magnetic resonance imaging in the presence of field inhomogeneities IEEE Trans. Med. Imaging 11 319-29 (Pubitemid 23573826)
9. Conturo T, Lori N, Cull T, Akbudak E, Snyder A, Shimony J, McKinstry R, Burton H and Raichle M 1999 Tracking neuronal fiber pathways in the living human brain Proc. Natl Acad. Sci. USA 96 10422 (Pubitemid 29422574)
10. De Munck J, Bhagwandien R, Muller S, Verster F and Van H 1996 The computation of MR image distortions caused by tissue susceptibility using the boundary element method IEEE Trans. Med. Imaging 15 620-7 (Pubitemid 126780351)
11. Deppe M, Duning T, Mohammadi S, Schwindt W, Kugel H, Knecht S and Ringelstein E 2007 Diffusion-tensor imaging at 3T: detection of white matter alterations in neurological patients on the basis of normal values Invest. Radiol. 42 338-45 (Pubitemid 46788731)
12. Deppe M et al 2008 Nerve fiber impairment of anterior thalamocortical circuitry in juvenile myoclonic epilepsy Neurology 71 1981-5
13. Droske M and Rumpf M 2004 A variational approach to nonrigid morphological image registration SIAM J. Appl. Math. 64 668-87
14. Duning T et al 2011 G-CSF Prevents the progression of structural disintegration of white matter tracts in amyotrophic lateral sclerosis: a pilot trial PLoS ONE 6 e17770
15. Edelstein W, Hutchison J, Johnson G and Redpath T 1980 Spin warp NMR imaging and applications to human whole-body imaging Phys. Med. Biol. 25 751-6
16. Evans L 1998 Partial Differential Equations (Providence, RI: American Mathematical Society)
17. Gigengack F, Ruthotto L, Burger M, Jiang X, Wolters C H and Schäfers K P 2012 Motion correction in dual gated cardiac PET using mass-preserving image registration IEEE Trans. Med. Imaging 31 698-712
18. Güllmar D, Haueisen J and Reichenbach J 2010 Influence of anisotropic electrical conductivity in white matter tissue on the EEG/MEG forward and inverse solution: a high-resolution whole head simulation study Neuroimage 51 145-63
19. Heidemann R, Porter D, Anwander A, Feiweier T, Heberlein K, Knösche T and Turner R 2010 Diffusion imaging in humans at 7 T using readout-segmented EPI and GRAPPA Magn. Reson. Med. 64 9-14
20. Holdefer R, Sadleir R and Russell M 2006 Predicted current densities in the brain during transcranial electrical stimulation Clin. Neurophysiol. 117 1388-97 (Pubitemid 43841856)
21. Holland D, Kuperman J and Dale A 2010 Efficient correction of inhomogeneous static magnetic field-induced distortion in echo planar imaging Neuroimage 50 175-83
22. Hu X, Hu C, Fang X, Cui L and Zhang Q 2008 Intraparenchymal epidermoid cysts in the brain: diagnostic value of MR diffusion-weighted imaging Clin. Radiol. 63 813-8
23. Hutton C, Bork A, Josephs O, Deichmann R, Ashburner J and Turner R 2002 Image distortion correction in fMRI: a quantitative evaluation Neuroimage 16 217-40 (Pubitemid 34852485)
24. Jezzard P and Balaban R 1995 Correction for geometric distortion in echo planar images from B0 field variations Magn. Reson. Med. 34 65-73
25. Jezzard P and Clare S 1999 Sources of distortion in functional MRI data Hum. Brain Mapp. 8 80-5 (Pubitemid 29480292)
26. Jones D 2004 The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: a Monte Carlo study Magn. Reson. Med. 51 807-15 (Pubitemid 38420459)
27. Kaden E, Knösche T and Anwander A 2007 Parametric spherical deconvolution: inferring anatomical connectivity using diffusion MR imaging Neuroimage 37 474-88 (Pubitemid 47444258)
28. Kumar A, Welti D and Ernst R 1975 NMR Fourier zeugmatography J. Magn. Reson. 18 69-83
29. Le Bihan D, Mangin J, Poupon C, Clark C, Pappata S, Molko N and Chabriat H 2001 Diffusion tensor imaging: concepts and applications J. Magn. Reson. Imaging 13 534-46 (Pubitemid 32231507)
30. Liang Z and Lauterbur P 2000 Principles of Magnetic Resonance Imaging: A Signal Processing Approach (New York: IEEE)
31. Makuuchi M, Bahlmann J, Anwander A and Friederici A 2009 Segregating the core computational faculty of human language from working memory Proc. Natl Acad. Sci. 106 8362-7
32. Merhof D, Soza G, Stadlbauer A, Greiner G and Nimsky C 2007 Correction of susceptibility artifacts in diffusion tensor data using non-linear registration Med. Image Anal. 11 588-603 (Pubitemid 47629804)
33. Modersitzki J 2009 FAIR: Flexible Algorithms for Image Registration (Philadelphia, PA: SIAM) (code freely available at http://www.siam.org/books/ fa06/)
34. Mohammadi S, Nagy Z, Hutton C, Josephs O and Weiskopf N 2012 Correction of vibration artifacts in DTI using phase-encoding reversal (COVIPER) Magn. Reson. Med. at press doi:10.1002/mrm.23308
35. Morgan P, Bowtell R, McIntyre D and Worthington B 2004 Correction of spatial distortion in EPI due to inhomogeneous static magnetic fields using the reversed gradient method J. Magn. Reson. Imaging 19 499-507 (Pubitemid 38437159)
36. Mori S, Kaufmann W, Pearlson G, Crain B, Stieltjes B, Solaiyappan M and Van Zijl P 2000 In vivo visualization of human neural pathways by magnetic resonance imaging Ann. Neurol. 47 412-4 (Pubitemid 30141861)
37. Neumann-Haefelin T, Wittsack H, Wenserski F, Siebler M, Seitz R, Mödder U and Freund H 1999 Diffusion- and perfusion-weighted MRI: the DWI/PWI mismatch region in acute stroke Stroke 30 1591-7 (Pubitemid 29379608)
38. Nocedal J and Wright S 2000 Numerical Optimization (Berlin: Springer)
39. Olesch J, Ruthotto L, Kugel H, Skare S, Fischer B and Wolters C 2010 A variational approach for the correction of field-inhomogeneities in EPI sequences Proc. SPIE 7623 76230K
40. Opitz A, Windhoff M, Heidemann R, Turner R and Thielscher A 2011 How the brain tissue shapes the electric field induced by transcranial magnetic stimulation Neuroimage 58 849-59
41. Prüssmann K 2006 Encoding and reconstruction in parallel MRI NMR Biomed. 19 288-99 (Pubitemid 43811103)
42. Robson M, Gore J and Constable R 1997 Measurement of the point spread function in MRI using constant time imaging Magn. Reson. Med. 38 733-40 (Pubitemid 27467712)
43. Ruthotto L 2010 Mass-preserving registration of medical images German Diploma Thesis (mathematics, written in english), University of Münster (http://wwwmath.uni-muenster.de/num/publications/2010/Rut10/)
44. Shimony J S, McKinstry R, Akbudak E, Aronovitz J A, Snyder A Z, Lori N F, Cull T S and Conturo T E 1999 Quantitative diffusion-tensor anisotropy brain MR imaging: normative human data and anatomic analysis Radiology 212 770-84 (Pubitemid 29410982)
45. Skare S and Andersson J 2005 Correction of MR image distortions induced by metallic objects using a 3D cubic B-spline basis set: application to stereotactic surgical planning Magn. Reson. Med. 54 169-81 (Pubitemid 40898410)
46. Skare S, Hedehus M, Moseley M and Li T 2000 Condition number as a measure of noise performance of diffusion tensor data acquisition schemes with MRI J. Magn. Reson. 147 340-52
47. Smith S et al 2004 Advances in functional and structural MR image analysis and implementation as FSL Neuroimage 23 S208-19 (http://www. sciencedirect.com/) (Pubitemid 39421720)
48. Stehling M, Turner R and Mansfield P 1991 Echo-planar imaging: magnetic resonance imaging in a fraction of a second Science 254 43
49. Stejskal E and Tanner J 1965 Spin diffusion measurements: spin echoes in the presence of time-dependent field gradients J. Chem. Phys. 42 288-92
50. Tao R, Fletcher P, Gerber S and Whitaker R 2009 A variational image-based approach to the correction of susceptibility artefacts in the alignment of diffusion weighted and structural MRI Information Processing in Medical Imaging (Berlin: Springer) pp 664-75
51. Warach S, Chien D, Li W, Ronthal M and Edelman R 1992 Fast magnetic resonance diffusion-weighted imaging of acute human stroke Neurology 42 1717
52. Warach S, Chien D, Li W, Ronthal M and Edelman R 1992 Fast magnetic resonance diffusion-weighted imaging of acute human stroke Neurology 42 2192 (erratum) PMID: 1513459
53. Weiskopf N, Klose U, Birbaumer N and Mathiak K 2005 Single-shot compensation of image distortions and BOLD contrast optimization using multi-echo EPI for real-time fMRI Neuroimage 24 1068-79 (Pubitemid 40164509)
54. Wersching H, Duning T, Lohmann H, Mohammadi S, Stehling C, Fobker M, Conty M, Minnerup J, Ringelstein E and Berger K et al 2010 Serum C-reactive protein is linked to cerebral microstructural integrity and cognitive function Neurology 74 1022-9
55. Wiegell M, Tuch D, Larsson H and Wedeen V 2003 Automatic segmentation of thalamic nuclei from diffusion tensor magnetic resonance imaging Neuroimage 19 391-401 (Pubitemid 39665689)
56. Wieshmann U, Clark C A, Symms M R, Franconi F, Barker G J and Shorvon S D 1999 Reduced anisotropy of water diffusion in structural cerebral abnormalities demonstrated with diffusion tensor imaging Magn. Reson. Imaging 17 1269-74 (Pubitemid 29534100)
57. Wolters C, Anwander A, Weinstein D, Koch M, Tricoche X and MacLeod R 2006 Influence of tissue conductivity anisotropy on EEG/MEG field and return current computation in a realistic head model: a simulation and visualization study using high-resolution finite element modeling Neuroimage 30 813-26
58. Xiang Q-S and Ye F Q 2007 Correction for geometric distortion and N/2 ghosting in EPI by phase labeling for additional coordinate encoding (PLACE) Magn. Reson. Med. 57 731-41 (Pubitemid 46731799)
59. Zaitsev M, Hennig J and Speck O 2004 Point spread function mapping with parallel imaging techniques and high acceleration factors: fast, robust, and flexible method for echo-planar imaging distortion correction Magn. Reson. Med. 52 1156-66 (Pubitemid 39453290)
60. Zeng H and Constable R 2002 Image distortion correction in EPI: comparison of field mapping with point spread function mapping Magn. Reson. Med. 48 137-46 (Pubitemid 34721597)