-
1
-
-
84871699564
-
Promoter-proximal pausing of RNA polymerase II: Emerging roles in metazoans
-
K. Adelman, and J.T. Lis Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans Nat. Rev. Genet. 13 2012 720 731
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 720-731
-
-
Adelman, K.1
Lis, J.T.2
-
2
-
-
19344363274
-
Cotranscriptional mRNP assembly: From the DNA to the nuclear pore
-
A. Aguilera Cotranscriptional mRNP assembly: from the DNA to the nuclear pore Curr. Opin. Cell Biol. 17 2005 242 250
-
(2005)
Curr. Opin. Cell Biol.
, vol.17
, pp. 242-250
-
-
Aguilera, A.1
-
3
-
-
0035895294
-
Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae
-
D. Barillà, B.A. Lee, and N.J. Proudfoot Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae Proc. Natl. Acad. Sci. USA 98 2001 445 450
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 445-450
-
-
Barillà, D.1
Lee, B.A.2
Proudfoot, N.J.3
-
4
-
-
84877895204
-
Histone deacetylase inhibitors (HDACis) that release the positive transcription elongation factor b (P-TEFb) from its inhibitory complex also activate HIV transcription
-
K. Bartholomeeusen, K. Fujinaga, Y. Xiang, and B.M. Peterlin Histone deacetylase inhibitors (HDACis) that release the positive transcription elongation factor b (P-TEFb) from its inhibitory complex also activate HIV transcription J. Biol. Chem. 288 2013 14400 14407
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 14400-14407
-
-
Bartholomeeusen, K.1
Fujinaga, K.2
Xiang, Y.3
Peterlin, B.M.4
-
5
-
-
47049108907
-
CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing
-
R. Berro, C. Pedati, K. Kehn-Hall, W. Wu, Z. Klase, Y. Even, A.M. Genevière, T. Ammosova, S. Nekhai, and F. Kashanchi CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing J. Virol. 82 2008 7155 7166
-
(2008)
J. Virol.
, vol.82
, pp. 7155-7166
-
-
Berro, R.1
Pedati, C.2
Kehn-Hall, K.3
Wu, W.4
Klase, Z.5
Even, Y.6
Genevière, A.M.7
Ammosova, T.8
Nekhai, S.9
Kashanchi, F.10
-
6
-
-
80054756087
-
The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes
-
D. Blazek, J. Kohoutek, K. Bartholomeeusen, E. Johansen, P. Hulinkova, Z. Luo, P. Cimermancic, J. Ule, and B.M. Peterlin The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes Genes Dev. 25 2011 2158 2172
-
(2011)
Genes Dev.
, vol.25
, pp. 2158-2172
-
-
Blazek, D.1
Kohoutek, J.2
Bartholomeeusen, K.3
Johansen, E.4
Hulinkova, P.5
Luo, Z.6
Cimermancic, P.7
Ule, J.8
Peterlin, B.M.9
-
8
-
-
84883856031
-
The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells
-
G. Castelo-Branco, P.P. Amaral, P.G. Engström, S.C. Robson, S.C. Marques, P. Bertone, and T. Kouzarides The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells Genome Biol. 14 2013 R98
-
(2013)
Genome Biol.
, vol.14
, pp. R98
-
-
Castelo-Branco, G.1
Amaral, P.P.2
Engström, P.G.3
Robson, S.C.4
Marques, S.C.5
Bertone, P.6
Kouzarides, T.7
-
9
-
-
0031950853
-
Epidermal growth factor induction of the c-jun promoter by a Rac pathway
-
N. Clarke, N. Arenzana, T. Hai, A. Minden, and R. Prywes Epidermal growth factor induction of the c-jun promoter by a Rac pathway Mol. Cell. Biol. 18 1998 1065 1073
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 1065-1073
-
-
Clarke, N.1
Arenzana, N.2
Hai, T.3
Minden, A.4
Prywes, R.5
-
10
-
-
84864293829
-
Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition
-
N. Czudnochowski, C.A. Bösken, and M. Geyer Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition Nat. Commun. 3 2012 842
-
(2012)
Nat. Commun.
, vol.3
, pp. 842
-
-
Czudnochowski, N.1
Bösken, C.A.2
Geyer, M.3
-
11
-
-
84893936668
-
3′ end formation of pre-mRNA and phosphorylation of Ser2 on the RNA polymerase II CTD are reciprocally coupled in human cells
-
L. Davidson, L. Muniz, and S. West 3′ end formation of pre-mRNA and phosphorylation of Ser2 on the RNA polymerase II CTD are reciprocally coupled in human cells Genes Dev. 28 2014 342 356
-
(2014)
Genes Dev.
, vol.28
, pp. 342-356
-
-
Davidson, L.1
Muniz, L.2
West, S.3
-
12
-
-
1042266636
-
Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: Phosphorylation by DYRK1A and colocalization with splicing factors
-
K. de Graaf, P. Hekerman, O. Spelten, A. Herrmann, L.C. Packman, K. Büssow, G. Müller-Newen, and W. Becker Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors J. Biol. Chem. 279 2004 4612 4624
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4612-4624
-
-
De Graaf, K.1
Hekerman, P.2
Spelten, O.3
Herrmann, A.4
Packman, L.C.5
Büssow, K.6
Müller-Newen, G.7
Becker, W.8
-
14
-
-
84870475491
-
Cdk11-cyclinL controls the assembly of the RNA polymerase II mediator complex
-
J. Drogat, V. Migeot, E. Mommaerts, C. Mullier, M. Dieu, H. van Bakel, and D. Hermand Cdk11-cyclinL controls the assembly of the RNA polymerase II mediator complex Cell Rep. 2 2012 1068 1076
-
(2012)
Cell Rep.
, vol.2
, pp. 1068-1076
-
-
Drogat, J.1
Migeot, V.2
Mommaerts, E.3
Mullier, C.4
Dieu, M.5
Van Bakel, H.6
Hermand, D.7
-
15
-
-
84865794821
-
Systematic kinome shRNA screening identifies CDK11 (PITSLRE) kinase expression is critical for osteosarcoma cell growth and proliferation
-
Z. Duan, J. Zhang, E. Choy, D. Harmon, X. Liu, P. Nielsen, H. Mankin, N.S. Gray, and F.J. Hornicek Systematic kinome shRNA screening identifies CDK11 (PITSLRE) kinase expression is critical for osteosarcoma cell growth and proliferation Clin. Cancer Res. 18 2012 4580 4588
-
(2012)
Clin. Cancer Res.
, vol.18
, pp. 4580-4588
-
-
Duan, Z.1
Zhang, J.2
Choy, E.3
Harmon, D.4
Liu, X.5
Nielsen, P.6
Mankin, H.7
Gray, N.S.8
Hornicek, F.J.9
-
16
-
-
84919665147
-
Cyclin-dependent kinase 12 increases 3′ end processing of growth factor-induced c-FOS transcripts
-
T.T. Eifler, W. Shao, K. Bartholomeeusen, K. Fujinaga, S. Jäger, J.R. Johnson, Z. Luo, N.J. Krogan, and B.M. Peterlin Cyclin-dependent kinase 12 increases 3′ end processing of growth factor-induced c-FOS transcripts Mol. Cell. Biol. 35 2015 468 478
-
(2015)
Mol. Cell. Biol.
, vol.35
, pp. 468-478
-
-
Eifler, T.T.1
Shao, W.2
Bartholomeeusen, K.3
Fujinaga, K.4
Jäger, S.5
Johnson, J.R.6
Luo, Z.7
Krogan, N.J.8
Peterlin, B.M.9
-
17
-
-
84873676209
-
CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo
-
B. Gu, D. Eick, and O. Bensaude CTD serine-2 plays a critical role in splicing and termination factor recruitment to RNA polymerase II in vivo Nucleic Acids Res. 41 2013 1591 1603
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1591-1603
-
-
Gu, B.1
Eick, D.2
Bensaude, O.3
-
18
-
-
0029883718
-
Role of polyadenylation in nucleocytoplasmic transport of mRNA
-
Y. Huang, and G.G. Carmichael Role of polyadenylation in nucleocytoplasmic transport of mRNA Mol. Cell. Biol. 16 1996 1534 1542
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 1534-1542
-
-
Huang, Y.1
Carmichael, G.G.2
-
19
-
-
58149502545
-
Role of cellular RNA processing factors in human immunodeficiency virus type 1 mRNA metabolism, replication, and infectivity
-
J.A. Jablonski, and M. Caputi Role of cellular RNA processing factors in human immunodeficiency virus type 1 mRNA metabolism, replication, and infectivity J. Virol. 83 2009 981 992
-
(2009)
J. Virol.
, vol.83
, pp. 981-992
-
-
Jablonski, J.A.1
Caputi, M.2
-
20
-
-
84855998457
-
Global landscape of HIV-human protein complexes
-
S. Jäger, P. Cimermancic, N. Gulbahce, J.R. Johnson, K.E. McGovern, S.C. Clarke, M. Shales, G. Mercenne, L. Pache, K. Li, and et al. Global landscape of HIV-human protein complexes Nature 481 2012 365 370
-
(2012)
Nature
, vol.481
, pp. 365-370
-
-
Jäger, S.1
Cimermancic, P.2
Gulbahce, N.3
Johnson, J.R.4
McGovern, K.E.5
Clarke, S.C.6
Shales, M.7
Mercenne, G.8
Pache, L.9
Li, K.10
-
21
-
-
80053413109
-
Transcriptional activity regulates alternative cleavage and polyadenylation
-
Z. Ji, W. Luo, W. Li, M. Hoque, Z. Pan, Y. Zhao, and B. Tian Transcriptional activity regulates alternative cleavage and polyadenylation Mol. Syst. Biol. 7 2011 534
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 534
-
-
Ji, Z.1
Luo, W.2
Li, W.3
Hoque, M.4
Pan, Z.5
Zhao, Y.6
Tian, B.7
-
22
-
-
84887609342
-
Cyclin-dependent kinase 11 (CDK11) is crucial in the growth of liposarcoma cells
-
B. Jia, E. Choy, G. Cote, D. Harmon, S. Ye, Q. Kan, H. Mankin, F. Hornicek, and Z. Duan Cyclin-dependent kinase 11 (CDK11) is crucial in the growth of liposarcoma cells Cancer Lett. 342 2014 104 112
-
(2014)
Cancer Lett.
, vol.342
, pp. 104-112
-
-
Jia, B.1
Choy, E.2
Cote, G.3
Harmon, D.4
Ye, S.5
Kan, Q.6
Mankin, H.7
Hornicek, F.8
Duan, Z.9
-
23
-
-
0023513563
-
Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product
-
S.Y. Kao, A.F. Calman, P.A. Luciw, and B.M. Peterlin Anti-termination of transcription within the long terminal repeat of HIV-1 by tat gene product Nature 330 1987 489 493
-
(1987)
Nature
, vol.330
, pp. 489-493
-
-
Kao, S.Y.1
Calman, A.F.2
Luciw, P.A.3
Peterlin, B.M.4
-
24
-
-
84863999140
-
Transcriptional and posttranscriptional regulation of HIV-1 gene expression
-
J. Karn, and C.M. Stoltzfus Transcriptional and posttranscriptional regulation of HIV-1 gene expression Cold Spring Harb. Perspect. Med. 2 2012 a006916
-
(2012)
Cold Spring Harb. Perspect. Med.
, vol.2
, pp. a006916
-
-
Karn, J.1
Stoltzfus, C.M.2
-
25
-
-
84880824954
-
Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor i
-
J. Katahira, D. Okuzaki, H. Inoue, Y. Yoneda, K. Maehara, and Y. Ohkawa Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I Nucleic Acids Res. 41 2013 7060 7072
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7060-7072
-
-
Katahira, J.1
Okuzaki, D.2
Inoue, H.3
Yoneda, Y.4
Maehara, K.5
Ohkawa, Y.6
-
26
-
-
1542290655
-
Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes
-
M. Kim, S.H. Ahn, N.J. Krogan, J.F. Greenblatt, and S. Buratowski Transitions in RNA polymerase II elongation complexes at the 3′ ends of genes EMBO J. 23 2004 354 364
-
(2004)
EMBO J.
, vol.23
, pp. 354-364
-
-
Kim, M.1
Ahn, S.H.2
Krogan, N.J.3
Greenblatt, J.F.4
Buratowski, S.5
-
27
-
-
79954422774
-
Melatonin promotes puromycin-induced apoptosis with activation of caspase-3 and 5′-adenosine monophosphate-activated kinase-alpha in human leukemia HL-60 cells
-
W. Koh, S.J. Jeong, H.J. Lee, H.G. Ryu, E.O. Lee, K.S. Ahn, H. Bae, and S.H. Kim Melatonin promotes puromycin-induced apoptosis with activation of caspase-3 and 5′-adenosine monophosphate-activated kinase-alpha in human leukemia HL-60 cells J. Pineal Res. 50 2011 367 373
-
(2011)
J. Pineal Res.
, vol.50
, pp. 367-373
-
-
Koh, W.1
Jeong, S.J.2
Lee, H.J.3
Ryu, H.G.4
Lee, E.O.5
Ahn, K.S.6
Bae, H.7
Kim, S.H.8
-
28
-
-
84868699286
-
Distinct roles of DBHS family members in the circadian transcriptional feedback loop
-
E. Kowalska, J.A. Ripperger, C. Muheim, B. Maier, Y. Kurihara, A.H. Fox, A. Kramer, and S.A. Brown Distinct roles of DBHS family members in the circadian transcriptional feedback loop Mol. Cell. Biol. 32 2012 4585 4594
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 4585-4594
-
-
Kowalska, E.1
Ripperger, J.A.2
Muheim, C.3
Maier, B.4
Kurihara, Y.5
Fox, A.H.6
Kramer, A.7
Brown, S.A.8
-
29
-
-
84924243634
-
Preclinical evaluation of cyclin dependent kinase 11 and casein kinase 2 survival kinases as RNA interference targets for triple negative breast cancer therapy
-
B.T. Kren, G.M. Unger, M.J. Abedin, R.I. Vogel, C.M. Henzler, K. Ahmed, and J.H. Trembley Preclinical evaluation of cyclin dependent kinase 11 and casein kinase 2 survival kinases as RNA interference targets for triple negative breast cancer therapy Breast Cancer Res. 17 2015 19
-
(2015)
Breast Cancer Res.
, vol.17
, pp. 19
-
-
Kren, B.T.1
Unger, G.M.2
Abedin, M.J.3
Vogel, R.I.4
Henzler, C.M.5
Ahmed, K.6
Trembley, J.H.7
-
30
-
-
48649089113
-
Transcriptional interference antagonizes proviral gene expression to promote HIV latency
-
T. Lenasi, X. Contreras, and B.M. Peterlin Transcriptional interference antagonizes proviral gene expression to promote HIV latency Cell Host Microbe 4 2008 123 133
-
(2008)
Cell Host Microbe
, vol.4
, pp. 123-133
-
-
Lenasi, T.1
Contreras, X.2
Peterlin, B.M.3
-
31
-
-
18144376727
-
Human hHpr1/p84/Thoc1 regulates transcriptional elongation and physically links RNA polymerase II and RNA processing factors
-
Y. Li, X. Wang, X. Zhang, and D.W. Goodrich Human hHpr1/p84/Thoc1 regulates transcriptional elongation and physically links RNA polymerase II and RNA processing factors Mol. Cell. Biol. 25 2005 4023 4033
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 4023-4033
-
-
Li, Y.1
Wang, X.2
Zhang, X.3
Goodrich, D.W.4
-
32
-
-
21644474090
-
Role of CDK/cyclin complexes in transcription and RNA splicing
-
P. Loyer, J.H. Trembley, R. Katona, V.J. Kidd, and J.M. Lahti Role of CDK/cyclin complexes in transcription and RNA splicing Cell. Signal. 17 2005 1033 1051
-
(2005)
Cell. Signal.
, vol.17
, pp. 1033-1051
-
-
Loyer, P.1
Trembley, J.H.2
Katona, R.3
Kidd, V.J.4
Lahti, J.M.5
-
33
-
-
43149117268
-
Characterization of cyclin L1 and L2 interactions with CDK11 and splicing factors: Influence of cyclin L isoforms on splice site selection
-
P. Loyer, J.H. Trembley, J.A. Grenet, A. Busson, A. Corlu, W. Zhao, M. Kocak, V.J. Kidd, and J.M. Lahti Characterization of cyclin L1 and L2 interactions with CDK11 and splicing factors: influence of cyclin L isoforms on splice site selection J. Biol. Chem. 283 2008 7721 7732
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 7721-7732
-
-
Loyer, P.1
Trembley, J.H.2
Grenet, J.A.3
Busson, A.4
Corlu, A.5
Zhao, W.6
Kocak, M.7
Kidd, V.J.8
Lahti, J.M.9
-
34
-
-
84860443663
-
New clues to understand the role of THO and other functionally related factors in mRNP biogenesis
-
R. Luna, A.G. Rondón, and A. Aguilera New clues to understand the role of THO and other functionally related factors in mRNP biogenesis Biochim. Biophys. Acta 1819 2012 514 520
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 514-520
-
-
Luna, R.1
Rondón, A.G.2
Aguilera, A.3
-
35
-
-
79957575162
-
Analysis of the human endogenous coregulator complexome
-
A. Malovannaya, R.B. Lanz, S.Y. Jung, Y. Bulynko, N.T. Le, D.W. Chan, C. Ding, Y. Shi, N. Yucer, G. Krenciute, and et al. Analysis of the human endogenous coregulator complexome Cell 145 2011 787 799
-
(2011)
Cell
, vol.145
, pp. 787-799
-
-
Malovannaya, A.1
Lanz, R.B.2
Jung, S.Y.3
Bulynko, Y.4
Le, N.T.5
Chan, D.W.6
Ding, C.7
Shi, Y.8
Yucer, N.9
Krenciute, G.10
-
36
-
-
22344438756
-
Recruitment of the human TREX complex to mRNA during splicing
-
S. Masuda, R. Das, H. Cheng, E. Hurt, N. Dorman, and R. Reed Recruitment of the human TREX complex to mRNA during splicing Genes Dev. 19 2005 1512 1517
-
(2005)
Genes Dev.
, vol.19
, pp. 1512-1517
-
-
Masuda, S.1
Das, R.2
Cheng, H.3
Hurt, E.4
Dorman, N.5
Reed, R.6
-
37
-
-
15644372864
-
5′-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II
-
S. McCracken, N. Fong, E. Rosonina, K. Yankulov, G. Brothers, D. Siderovski, A. Hessel, S. Foster, S. Shuman, and D.L. Bentley 5′-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II Genes Dev. 11 1997 3306 3318
-
(1997)
Genes Dev.
, vol.11
, pp. 3306-3318
-
-
McCracken, S.1
Fong, N.2
Rosonina, E.3
Yankulov, K.4
Brothers, G.5
Siderovski, D.6
Hessel, A.7
Foster, S.8
Shuman, S.9
Bentley, D.L.10
-
38
-
-
10944221728
-
Regulation of stability of cyclin-dependent kinase CDK11p110 and a caspase-processed form, CDK11p46, by Hsp90
-
M. Mikolajczyk, and M.A. Nelson Regulation of stability of cyclin-dependent kinase CDK11p110 and a caspase-processed form, CDK11p46, by Hsp90 Biochem. J. 384 2004 461 467
-
(2004)
Biochem. J.
, vol.384
, pp. 461-467
-
-
Mikolajczyk, M.1
Nelson, M.A.2
-
39
-
-
84875229872
-
How cells get the message: Dynamic assembly and function of mRNA-protein complexes
-
M. Müller-McNicoll, and K.M. Neugebauer How cells get the message: dynamic assembly and function of mRNA-protein complexes Nat. Rev. Genet. 14 2013 275 287
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 275-287
-
-
Müller-Mcnicoll, M.1
Neugebauer, K.M.2
-
41
-
-
50049085170
-
The positive transcription elongation factor b is an essential cofactor for the activation of transcription by myocyte enhancer factor 2
-
M. Nojima, Y. Huang, M. Tyagi, H.Y. Kao, and K. Fujinaga The positive transcription elongation factor b is an essential cofactor for the activation of transcription by myocyte enhancer factor 2 J. Mol. Biol. 382 2008 275 287
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 275-287
-
-
Nojima, M.1
Huang, Y.2
Tyagi, M.3
Kao, H.Y.4
Fujinaga, K.5
-
42
-
-
84869036598
-
Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing
-
K.E. Ocwieja, S. Sherrill-Mix, R. Mukherjee, R. Custers-Allen, P. David, M. Brown, S. Wang, D.R. Link, J. Olson, K. Travers, and et al. Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing Nucleic Acids Res. 40 2012 10345 10355
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 10345-10355
-
-
Ocwieja, K.E.1
Sherrill-Mix, S.2
Mukherjee, R.3
Custers-Allen, R.4
David, P.5
Brown, M.6
Wang, S.7
Link, D.R.8
Olson, J.9
Travers, K.10
-
43
-
-
80052282840
-
The role of amino-terminal sequences in cellular localization and antiviral activity of APOBEC3B
-
V. Pak, G. Heidecker, V.K. Pathak, and D. Derse The role of amino-terminal sequences in cellular localization and antiviral activity of APOBEC3B J. Virol. 85 2011 8538 8547
-
(2011)
J. Virol.
, vol.85
, pp. 8538-8547
-
-
Pak, V.1
Heidecker, G.2
Pathak, V.K.3
Derse, D.4
-
44
-
-
33746403681
-
Controlling the elongation phase of transcription with P-TEFb
-
B.M. Peterlin, and D.H. Price Controlling the elongation phase of transcription with P-TEFb Mol. Cell 23 2006 297 305
-
(2006)
Mol. Cell
, vol.23
, pp. 297-305
-
-
Peterlin, B.M.1
Price, D.H.2
-
45
-
-
0026552386
-
DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats
-
S.R. Peterson, A. Dvir, C.W. Anderson, and W.S. Dynan DNA binding provides a signal for phosphorylation of the RNA polymerase II heptapeptide repeats Genes Dev. 6 1992 426 438
-
(1992)
Genes Dev.
, vol.6
, pp. 426-438
-
-
Peterson, S.R.1
Dvir, A.2
Anderson, C.W.3
Dynan, W.S.4
-
46
-
-
80052447253
-
Ending the message: Poly(A) signals then and now
-
N.J. Proudfoot Ending the message: poly(A) signals then and now Genes Dev. 25 2011 1770 1782
-
(2011)
Genes Dev.
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
47
-
-
0027494083
-
Alternative splicing of human immunodeficiency virus type 1 mRNA modulates viral protein expression, replication, and infectivity
-
D.F. Purcell, and M.A. Martin Alternative splicing of human immunodeficiency virus type 1 mRNA modulates viral protein expression, replication, and infectivity J. Virol. 67 1993 6365 6378
-
(1993)
J. Virol.
, vol.67
, pp. 6365-6378
-
-
Purcell, D.F.1
Martin, M.A.2
-
48
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
P.B. Rahl, C.Y. Lin, A.C. Seila, R.A. Flynn, S. McCuine, C.B. Burge, P.A. Sharp, and R.A. Young c-Myc regulates transcriptional pause release Cell 141 2010 432 445
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
49
-
-
2542437733
-
Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster
-
J. Rehwinkel, A. Herold, K. Gari, T. Köcher, M. Rode, F.L. Ciccarelli, M. Wilm, and E. Izaurralde Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster Nat. Struct. Mol. Biol. 11 2004 558 566
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 558-566
-
-
Rehwinkel, J.1
Herold, A.2
Gari, K.3
Köcher, T.4
Rode, M.5
Ciccarelli, F.L.6
Wilm, M.7
Izaurralde, E.8
-
50
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
A.R. Schröder, P. Shinn, H. Chen, C. Berry, J.R. Ecker, and F. Bushman HIV-1 integration in the human genome favors active genes and local hotspots Cell 110 2002 521 529
-
(2002)
Cell
, vol.110
, pp. 521-529
-
-
Schröder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
Bushman, F.6
-
51
-
-
84929453434
-
The end of the message: Multiple protein-RNA interactions define the mRNA polyadenylation site
-
Y. Shi, and J.L. Manley The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site Genes Dev. 29 2015 889 897
-
(2015)
Genes Dev.
, vol.29
, pp. 889-897
-
-
Shi, Y.1
Manley, J.L.2
-
52
-
-
67649634849
-
Defining the human deubiquitinating enzyme interaction landscape
-
M.E. Sowa, E.J. Bennett, S.P. Gygi, and J.W. Harper Defining the human deubiquitinating enzyme interaction landscape Cell 138 2009 389 403
-
(2009)
Cell
, vol.138
, pp. 389-403
-
-
Sowa, M.E.1
Bennett, E.J.2
Gygi, S.P.3
Harper, J.W.4
-
53
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
K. Strässer, S. Masuda, P. Mason, J. Pfannstiel, M. Oppizzi, S. Rodriguez-Navarro, A.G. Rondón, A. Aguilera, K. Struhl, R. Reed, and E. Hurt TREX is a conserved complex coupling transcription with messenger RNA export Nature 417 2002 304 308
-
(2002)
Nature
, vol.417
, pp. 304-308
-
-
Strässer, K.1
Masuda, S.2
Mason, P.3
Pfannstiel, J.4
Oppizzi, M.5
Rodriguez-Navarro, S.6
Rondón, A.G.7
Aguilera, A.8
Struhl, K.9
Reed, R.10
Hurt, E.11
-
54
-
-
0033986157
-
Interactions between equine cyclin T1, Tat, and TAR are disrupted by a leucine-to-valine substitution found in human cyclin T1
-
R. Taube, K. Fujinaga, D. Irwin, J. Wimmer, M. Geyer, and B.M. Peterlin Interactions between equine cyclin T1, Tat, and TAR are disrupted by a leucine-to-valine substitution found in human cyclin T1 J. Virol. 74 2000 892 898
-
(2000)
J. Virol.
, vol.74
, pp. 892-898
-
-
Taube, R.1
Fujinaga, K.2
Irwin, D.3
Wimmer, J.4
Geyer, M.5
Peterlin, B.M.6
-
55
-
-
84925283272
-
THOC5 controls 3'end-processing of immediate early genes via interaction with polyadenylation specific factor 100 (CPSF100)
-
D.D. Tran, S. Saran, A.J. Williamson, A. Pierce, O. Dittrich-Breiholz, L. Wiehlmann, A. Koch, A.D. Whetton, and T. Tamura THOC5 controls 3'end-processing of immediate early genes via interaction with polyadenylation specific factor 100 (CPSF100) Nucleic Acids Res. 42 2014 12249 12260
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12249-12260
-
-
Tran, D.D.1
Saran, S.2
Williamson, A.J.3
Pierce, A.4
Dittrich-Breiholz, O.5
Wiehlmann, L.6
Koch, A.7
Whetton, A.D.8
Tamura, T.9
-
56
-
-
0037462817
-
Casein kinase 2 interacts with cyclin-dependent kinase 11 (CDK11) in vivo and phosphorylates both the RNA polymerase II carboxyl-terminal domain and CDK11 in vitro
-
J.H. Trembley, D. Hu, C.A. Slaughter, J.M. Lahti, and V.J. Kidd Casein kinase 2 interacts with cyclin-dependent kinase 11 (CDK11) in vivo and phosphorylates both the RNA polymerase II carboxyl-terminal domain and CDK11 in vitro J. Biol. Chem. 278 2003 2265 2270
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 2265-2270
-
-
Trembley, J.H.1
Hu, D.2
Slaughter, C.A.3
Lahti, J.M.4
Kidd, V.J.5
-
57
-
-
70350004235
-
HIV-1 mRNA 3′ end processing is distinctively regulated by eIF3f, CDK11, and splice factor 9G8
-
S.T. Valente, G.M. Gilmartin, K. Venkatarama, G. Arriagada, and S.P. Goff HIV-1 mRNA 3′ end processing is distinctively regulated by eIF3f, CDK11, and splice factor 9G8 Mol. Cell 36 2009 279 289
-
(2009)
Mol. Cell
, vol.36
, pp. 279-289
-
-
Valente, S.T.1
Gilmartin, G.M.2
Venkatarama, K.3
Arriagada, G.4
Goff, S.P.5
-
58
-
-
0037103133
-
Repression of AP-1 function: A mechanism for the regulation of Blimp-1 expression and B lymphocyte differentiation by the B cell lymphoma-6 protooncogene
-
F.H. Vasanwala, S. Kusam, L.M. Toney, and A.L. Dent Repression of AP-1 function: a mechanism for the regulation of Blimp-1 expression and B lymphocyte differentiation by the B cell lymphoma-6 protooncogene J. Immunol. 169 2002 1922 1929
-
(2002)
J. Immunol.
, vol.169
, pp. 1922-1929
-
-
Vasanwala, F.H.1
Kusam, S.2
Toney, L.M.3
Dent, A.L.4
-
59
-
-
84949187751
-
Scoring large-scale affinity purification mass spectrometry datasets with MiST
-
19 11-18 19 16
-
E. Verschueren, J. Von Dollen, P. Cimermancic, N. Gulbahce, A. Sali, and N.J. Krogan Scoring large-scale affinity purification mass spectrometry datasets with MiST Curr. Protoc. Bioinformatics 49 2015 8 19 11 18 19 16
-
(2015)
Curr. Protoc. Bioinformatics
, vol.49
, pp. 8
-
-
Verschueren, E.1
Von Dollen, J.2
Cimermancic, P.3
Gulbahce, N.4
Sali, A.5
Krogan, N.J.6
-
60
-
-
0008146244
-
3′-End processing of pre-mRNA in eukaryotes
-
E. Wahle, and U. Rüegsegger 3′-End processing of pre-mRNA in eukaryotes FEMS Microbiol. Rev. 23 1999 277 295
-
(1999)
FEMS Microbiol. Rev.
, vol.23
, pp. 277-295
-
-
Wahle, E.1
Rüegsegger, U.2
-
61
-
-
52149093714
-
Cyclin T1-dependent genes in activated CD4 T and macrophage cell lines appear enriched in HIV-1 co-factors
-
W. Yu, R. Ramakrishnan, Y. Wang, K. Chiang, T.L. Sung, and A.P. Rice Cyclin T1-dependent genes in activated CD4 T and macrophage cell lines appear enriched in HIV-1 co-factors PLoS ONE 3 2008 e3146
-
(2008)
PLoS ONE
, vol.3
, pp. e3146
-
-
Yu, W.1
Ramakrishnan, R.2
Wang, Y.3
Chiang, K.4
Sung, T.L.5
Rice, A.P.6
-
62
-
-
79960015376
-
A program of microRNAs controls osteogenic lineage progression by targeting transcription factor Runx2
-
Y. Zhang, R.L. Xie, C.M. Croce, J.L. Stein, J.B. Lian, A.J. van Wijnen, and G.S. Stein A program of microRNAs controls osteogenic lineage progression by targeting transcription factor Runx2 Proc. Natl. Acad. Sci. USA 108 2011 9863 9868
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 9863-9868
-
-
Zhang, Y.1
Xie, R.L.2
Croce, C.M.3
Stein, J.L.4
Lian, J.B.5
Van Wijnen, A.J.6
Stein, G.S.7
-
63
-
-
0242300120
-
The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA
-
M. Zhou, L. Deng, F. Kashanchi, J.N. Brady, A.J. Shatkin, and A. Kumar The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA Proc. Natl. Acad. Sci. USA 100 2003 12666 12671
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12666-12671
-
-
Zhou, M.1
Deng, L.2
Kashanchi, F.3
Brady, J.N.4
Shatkin, A.J.5
Kumar, A.6
|