-
1
-
-
84942087410
-
Biofilm formation by aspergillus fumigatus
-
Kaur, S., and Singh, S. (2014) Biofilm formation by Aspergillus fumigatus. Med. Mycol. 52, 2-9
-
(2014)
Med. Mycol.
, vol.52
, pp. 2-9
-
-
Kaur, S.1
Singh, S.2
-
2
-
-
84871502341
-
Hidden killers: Human fungal infections
-
Brown, G. D., and Denning, D. W., Gow, N. A., Levitz, S. M., and Netea, M. G., and White, T. C. (2012) Hidden killers: human fungal infections. Sci. Transl. Med. 4, 165rv13
-
(2012)
Sci. Transl. Med.
, vol.4
-
-
Brown, G.D.1
Denning, D.W.2
Gow, N.A.3
Levitz, S.M.4
Netea, M.G.5
White, T.C.6
-
3
-
-
84886306657
-
Epidemiology and sites of involvement of invasive fungal infections in patients with haematological malignancies: A 20-year autopsy study
-
Lewis, R. E., Cahyame-Zuniga, L., Leventakos, K., Chamilos, G., Ben-Ami, R., Tamboli, P., Tarrand, J., Bodey, G. P., Luna, M., and Kontoyiannis, D. P. (2013) Epidemiology and sites of involvement of invasive fungal infections in patients with haematological malignancies: a 20-year autopsy study. Mycoses 56, 638-645
-
(2013)
Mycoses
, vol.56
, pp. 638-645
-
-
Lewis, R.E.1
Cahyame-Zuniga, L.2
Leventakos, K.3
Chamilos, G.4
Ben-Ami, R.5
Tamboli, P.6
Tarrand, J.7
Bodey, G.P.8
Luna, M.9
Kontoyiannis, D.P.10
-
4
-
-
38549114657
-
The current status of species recognition and identification in aspergillus
-
Geiser, D. M., and Klich, M. A., Frisvad, J. C., Peterson, S. W., Varga, J., and Samson, R. A. (2007) The current status of species recognition and identification in Aspergillus. Stud. Mycol. 59, 1-10
-
(2007)
Stud. Mycol.
, vol.59
, pp. 1-10
-
-
Geiser, D.M.1
Klich, M.A.2
Frisvad, J.C.3
Peterson, S.W.4
Varga, J.5
Samson, R.A.6
-
5
-
-
81755182989
-
Galactosaminogalactan, a new immunosuppressive polysaccharide of aspergillus fumigatus
-
Fontaine, T., Delangle, A., Simenel, C., Coddeville, B., van Vliet, S. J., van Kooyk, Y., Bozza, S., Moretti, S., Schwarz, F., Trichot, C., Aebi, M., Delepierre, M., Elbim, C., Romani, L., and Latgé, J. P. (2011) Galactosaminogalactan, a new immunosuppressive polysaccharide of Aspergillus fumigatus. PLoS Pathog 7, e1002372
-
(2011)
PLoS Pathog
, vol.7
-
-
Fontaine, T.1
Delangle, A.2
Simenel, C.3
Coddeville, B.4
Van Vliet, S.J.5
Van Kooyk, Y.6
Bozza, S.7
Moretti, S.8
Schwarz, F.9
Trichot, C.10
Aebi, M.11
Delepierre, M.12
Elbim, C.13
Romani, L.14
Latgé, J.P.15
-
6
-
-
84883402608
-
Aspergillus galactosaminogalactan mediates adherence to host constituents and conceals hyphal β-glucan from the immune system
-
Gravelat, F. N., Beauvais, A., Liu, H., Lee, M. J., Snarr, B. D., Chen, D., Xu, W., Kravtsov, I., Hoareau, C. M., Vanier, G., Urb, M., Campoli, P., Al Abdallah, Q., Lehoux, M., Chabot, J. C., et al. (2013) Aspergillus galactosaminogalactan mediates adherence to host constituents and conceals hyphal β-glucan from the immune system. PLoS Pathog. 9, e1003575
-
(2013)
PLoS Pathog.
, vol.9
-
-
Gravelat, F.N.1
Beauvais, A.2
Liu, H.3
Lee, M.J.4
Snarr, B.D.5
Chen, D.6
Xu, W.7
Kravtsov, I.8
Hoareau, C.M.9
Vanier, G.10
Urb, M.11
Campoli, P.12
Al Abdallah, Q.13
Lehoux, M.14
Chabot, J.C.15
-
7
-
-
84897373901
-
A polysaccharide virulence factor from aspergillus fumigatus elicits anti-inflammatory effects through induction of interleukin-1 receptor antagonist
-
Gresnigt, M. S., Bozza, S., Becker, K. L., and Joosten, L. A., Abdollahi-Roodsaz, S., van der Berg, W. B., Dinarello, C. A., Netea, M. G., Fontaine, T., De Luca, A., Moretti, S., Romani, L., Latge, J. P., and van de Veerdonk, F. L. (2014) A polysaccharide virulence factor from Aspergillus fumigatus elicits anti-inflammatory effects through induction of interleukin-1 receptor antagonist. PLoS Pathog. 10, e1003936
-
(2014)
PLoS Pathog.
, vol.10
-
-
Gresnigt, M.S.1
Bozza, S.2
Becker, K.L.3
Joosten, L.A.4
Abdollahi-Roodsaz, S.5
Van Der Berg, W.B.6
Dinarello, C.A.7
Netea, M.G.8
Fontaine, T.9
De Luca, A.10
Moretti, S.11
Romani, L.12
Latge, J.P.13
Van De Veerdonk, F.L.14
-
8
-
-
85018186510
-
Deacetylation of galactosaminogalactan in aspergillus fumigatus is a required post-synthesis modification for adherence and virulence
-
Lee, M. J., and Geller, A. M., Liu, H., Gravelat, F. N., Snarr, B. D., Cerone, R. P., Baptista, S. D., Bamford, N. C., Binogradov, E., Fontaine, T., Latge, J., Stajich, J., Howell, P. L., Filler, S. G., and Sheppard, D. C. (2015) Deacetylation of galactosaminogalactan in Aspergillus fumigatus is a required post-synthesis modification for adherence and virulence. mBio
-
(2015)
MBio
-
-
Lee, M.J.1
Geller, A.M.2
Liu, H.3
Gravelat, F.N.4
Snarr, B.D.5
Cerone, R.P.6
Baptista, S.D.7
Bamford, N.C.8
Binogradov, E.9
Fontaine, T.10
Latge, J.11
Stajich, J.12
Howell, P.L.13
Filler, S.G.14
Sheppard, D.C.15
-
9
-
-
77950621398
-
In vivo biofilm composition of aspergillus fumigatus
-
Loussert, C., Schmitt, C., Prevost, M. C., Balloy, V., Fadel, E., Philippe, B., Kauffmann-Lacroix, C., Latgé, J. P., and Beauvais, A. (2010) In vivo biofilm composition of Aspergillus fumigatus. Cell. Microbiol. 12, 405-410
-
(2010)
Cell. Microbiol.
, vol.12
, pp. 405-410
-
-
Loussert, C.1
Schmitt, C.2
Prevost, M.C.3
Balloy, V.4
Fadel, E.5
Philippe, B.6
Kauffmann-Lacroix, C.7
Latgé, J.P.8
Beauvais, A.9
-
10
-
-
84946100702
-
Fungal exopolysaccharide galactosaminogalactan mediates virulence by enhancing resistance to neutrophil extracellular traps
-
Lee, M. J., Liu, H., Barker, B. M., and Snarr, B. D., Gravelat, F. N., Al Abdallah, Q., Gavino, C., Xiao, T., Ralph, B., Solis, N. V., Lehoux, M., Baptista, S. D., Thammahong, A., Cerone, R. P., Baistrocchi, S. R., et al. (2015) Fungal exopolysaccharide galactosaminogalactan mediates virulence by enhancing resistance to neutrophil extracellular traps. PLoS Pathog. 10.1371/journal.ppat.1005187
-
(2015)
PLoS Pathog.
-
-
Lee, M.J.1
Liu, H.2
Barker, B.M.3
Snarr, B.D.4
Gravelat, F.N.5
Al Abdallah, Q.6
Gavino, C.7
Xiao, T.8
Ralph, B.9
Solis, N.V.10
Lehoux, M.11
Baptista, S.D.12
Thammahong, A.13
Cerone, R.P.14
Baistrocchi, S.R.15
-
11
-
-
84901256530
-
A polysaccharide virulence factor of a human fungal pathogen induces neutrophil apoptosis via NK cells
-
Robinet, P., Baychelier, F., Fontaine, T., Picard, C., Debré, P., Vieillard, V., Latgé, J. P., and Elbim, C. (2014) A polysaccharide virulence factor of a human fungal pathogen induces neutrophil apoptosis via NK cells. J. Immunol. 192, 5332-5342
-
(2014)
J. Immunol.
, vol.192
, pp. 5332-5342
-
-
Robinet, P.1
Baychelier, F.2
Fontaine, T.3
Picard, C.4
Debré, P.5
Vieillard, V.6
Latgé, J.P.7
Elbim, C.8
-
12
-
-
48849094142
-
In vivo analysis of aspergillus fumigatus developmental gene expression determined by real time reverse transcription-PCR
-
Gravelat, F. N., Doedt, T., Chiang, L. Y., Liu, H., Filler, S. G., Patterson, T. F., and Sheppard, D. C. (2008) In vivo analysis of Aspergillus fumigatus developmental gene expression determined by real time reverse transcription-PCR. Infect. Immun. 76, 3632-3639
-
(2008)
Infect. Immun.
, vol.76
, pp. 3632-3639
-
-
Gravelat, F.N.1
Doedt, T.2
Chiang, L.Y.3
Liu, H.4
Filler, S.G.5
Patterson, T.F.6
Sheppard, D.C.7
-
13
-
-
84873107819
-
Synthase-dependent exopolysaccharide secretion in gram-negative bacteria
-
Whitney, J. C., and Howell, P. L. (2013) Synthase-dependent exopolysaccharide secretion in Gram-negative bacteria. Trends Microbiol. 21, 63-72
-
(2013)
Trends Microbiol.
, vol.21
, pp. 63-72
-
-
Whitney, J.C.1
Howell, P.L.2
-
14
-
-
11144237620
-
A crucial role for exopolysaccharide modification in bacterial biofilm formation, immune evasion, and virulence
-
Vuong, C., Kocianova, S., Voyich, J. M., Yao, Y., and Fischer, E. R., DeLeo, F. R., and Otto, M. (2004) A crucial role for exopolysaccharide modification in bacterial biofilm formation, immune evasion, and virulence. J. Biol. Chem. 279, 54881-54886
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 54881-54886
-
-
Vuong, C.1
Kocianova, S.2
Voyich, J.M.3
Yao, Y.4
Fischer, E.R.5
DeLeo, F.R.6
Otto, M.7
-
15
-
-
0029888438
-
Molecular basis of intercellular adhesion in the biofilmforming staphylococcus epidermidis
-
Heilmann, C., Schweitzer, O., Gerke, C., Vanittanakom, N., Mack, D., and Götz, F. (1996) Molecular basis of intercellular adhesion in the biofilmforming Staphylococcus epidermidis. Mol. Microbiol. 20, 1083-1091
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 1083-1091
-
-
Heilmann, C.1
Schweitzer, O.2
Gerke, C.3
Vanittanakom, N.4
Mack, D.5
Götz, F.6
-
16
-
-
73649119152
-
Structure, function and contribution of polysaccharide intercellular adhesin (PIA) to staphylococcus epidermidis biofilm formation and pathogenesis of biomaterial-associated infections
-
Rohde, H., Frankenberger, S., Zähringer, U., and Mack, D. (2010) Structure, function and contribution of polysaccharide intercellular adhesin (PIA) to Staphylococcus epidermidis biofilm formation and pathogenesis of biomaterial-associated infections. Eur. J. Cell Biol. 89, 103-111
-
(2010)
Eur. J. Cell Biol.
, vol.89
, pp. 103-111
-
-
Rohde, H.1
Frankenberger, S.2
Zähringer, U.3
Mack, D.4
-
17
-
-
33846603188
-
Role of a putative polysaccharide locus in bordetella biofilm development
-
Parise, G., Mishra, M., Itoh, Y., Romeo, T., and Deora, R. (2007) Role of a putative polysaccharide locus in Bordetella biofilm development. J. Bacteriol. 189, 750-760
-
(2007)
J. Bacteriol.
, vol.189
, pp. 750-760
-
-
Parise, G.1
Mishra, M.2
Itoh, Y.3
Romeo, T.4
Deora, R.5
-
18
-
-
36549050407
-
The bordetella bps polysaccharide is critical for biofilm development in the mouse respiratory tract
-
Sloan, G. P., and Love, C. F., Sukumar, N., Mishra, M., and Deora, R. (2007) The Bordetella Bps polysaccharide is critical for biofilm development in the mouse respiratory tract. J. Bacteriol. 189, 8270-8276
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8270-8276
-
-
Sloan, G.P.1
Love, C.F.2
Sukumar, N.3
Mishra, M.4
Deora, R.5
-
19
-
-
0035152224
-
Biofilm exopolysaccharides: A strong and sticky framework
-
Sutherland, I. (2001) Biofilm exopolysaccharides: a strong and sticky framework. Microbiology 147, 3-9
-
(2001)
Microbiology
, vol.147
, pp. 3-9
-
-
Sutherland, I.1
-
20
-
-
84892640376
-
Overlapping and distinct roles of aspergillus fumigatus UDP-glucose 4-epimerases in galactose metabolism and the synthesis of galactose-containing cell wall polysaccharides
-
Lee, M. J., Gravelat, F. N., Cerone, R. P., Baptista, S. D., Campoli, P. V., Choe, S. I., Kravtsov, I., Vinogradov, E., Creuzenet, C., Liu, H., Berghuis, A. M., Latgé, J. P., Filler, S. G., Fontaine, T., and Sheppard, D. C. (2014) Overlapping and distinct roles of Aspergillus fumigatus UDP-glucose 4-epimerases in galactose metabolism and the synthesis of galactose-containing cell wall polysaccharides. J. Biol. Chem. 289, 1243-1256
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 1243-1256
-
-
Lee, M.J.1
Gravelat, F.N.2
Cerone, R.P.3
Baptista, S.D.4
Campoli, P.V.5
Choe, S.I.6
Kravtsov, I.7
Vinogradov, E.8
Creuzenet, C.9
Liu, H.10
Berghuis, A.M.11
Latgé, J.P.12
Filler, S.G.13
Fontaine, T.14
Sheppard, D.C.15
-
21
-
-
84873547597
-
Formation of highly twisted ribbons in a carboxymethylcellulase genedisrupted strain of a cellulose-producing bacterium
-
Nakai, T., Sugano, Y., Shoda, M., Sakakibara, H., Oiwa, K., Tuzi, S., Imai, T., Sugiyama, J., Takeuchi, M., Yamauchi, D., and Mineyuki, Y. (2013) Formation of highly twisted ribbons in a carboxymethylcellulase genedisrupted strain of a cellulose-producing bacterium. J. Bacteriol. 195, 958-964
-
(2013)
J. Bacteriol.
, vol.195
, pp. 958-964
-
-
Nakai, T.1
Sugano, Y.2
Shoda, M.3
Sakakibara, H.4
Oiwa, K.5
Tuzi, S.6
Imai, T.7
Sugiyama, J.8
Takeuchi, M.9
Yamauchi, D.10
Mineyuki, Y.11
-
22
-
-
84905053943
-
Modification and periplasmic translocation of the biofilm exopolysaccharide poly-β-1, 6-N-acetyl-dglucosamine
-
Little, D. J., Li, G., Ing, C., and DiFrancesco, B. R., Bamford, N. C., Robinson, H., Nitz, M., Pomès, R., and Howell, P. L. (2014) Modification and periplasmic translocation of the biofilm exopolysaccharide poly-β-1, 6-N-acetyl-Dglucosamine. Proc. Natl. Acad. Sci. U.S.A. 111, 11013-11018
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 11013-11018
-
-
Little, D.J.1
Li, G.2
Ing, C.3
DiFrancesco, B.R.4
Bamford, N.C.5
Robinson, H.6
Nitz, M.7
Pomès, R.8
Howell, P.L.9
-
23
-
-
84941591667
-
BpsB is a poly-β-1, 6-N-acetyl-D-glucosamine deacetylase required for biofilm formation in bordetella bronchiseptica
-
Little, D. J., Milek, S., Bamford, N. C., Ganguly, T., DiFrancesco, B. R., Nitz, M., Deora, R., and Howell, P. L. (2015) BpsB is a poly-β-1, 6-N-acetyl-D-glucosamine deacetylase required for biofilm formation in Bordetella bronchiseptica. J. Biol. Chem. 290, 22827-22840
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 22827-22840
-
-
Little, D.J.1
Milek, S.2
Bamford, N.C.3
Ganguly, T.4
DiFrancesco, B.R.5
Nitz, M.6
Deora, R.7
Howell, P.L.8
-
24
-
-
47049129510
-
Roles of pgaABCD genes in synthesis, modification, and export of the Escherichia coli biofilm adhesin poly-β-1, 6-N-acetyl-D-glucosamine
-
Itoh, Y., and Rice, J. D., Goller, C., Pannuri, A., Taylor, J., Meisner, J., Beveridge, T. J., and Preston, J. F., 3rd, and Romeo, T. (2008) Roles of pgaABCD genes in synthesis, modification, and export of the Escherichia coli biofilm adhesin poly-β-1, 6-N-acetyl-D-glucosamine. J. Bacteriol. 190, 3670-3680
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3670-3680
-
-
Itoh, Y.1
Rice, J.D.2
Goller, C.3
Pannuri, A.4
Taylor, J.5
Meisner, J.6
Beveridge, T.J.7
Preston, J.F.8
Romeo, T.9
-
25
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., and Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
26
-
-
84865222416
-
The structure- and metal-dependent activity of Escherichia coli PgaB provides insight into the partial de-N-acetylation of poly-β-1, 6-N-acetyl-D-glucosamine
-
Little, D. J., Poloczek, J., Whitney, J. C., Robinson, H., Nitz, M., and Howell, P. L. (2012) The structure- and metal-dependent activity of Escherichia coli PgaB provides insight into the partial de-N-acetylation of poly-β-1, 6-N-acetyl-D-glucosamine. J. Biol. Chem. 287, 31126-31137
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 31126-31137
-
-
Little, D.J.1
Poloczek, J.2
Whitney, J.C.3
Robinson, H.4
Nitz, M.5
Howell, P.L.6
-
27
-
-
84877994854
-
PelA deacetylase activity is required for pel polysaccharide synthesis in pseudomonas aeruginosa
-
Colvin, K. M., Alnabelseya, N., Baker, P., Whitney, J. C., Howell, P. L., and Parsek, M. R. (2013) PelA deacetylase activity is required for Pel polysaccharide synthesis in Pseudomonas aeruginosa. J. Bacteriol. 195, 2329-2339
-
(2013)
J. Bacteriol.
, vol.195
, pp. 2329-2339
-
-
Colvin, K.M.1
Alnabelseya, N.2
Baker, P.3
Whitney, J.C.4
Howell, P.L.5
Parsek, M.R.6
-
28
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams, P. D., Grosse-Kunstleve, R. W., Hung, L. W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., and Terwilliger, T. C. (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr. 58, 1948-1954
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
29
-
-
28844451839
-
Role of the pseudomonas fluorescens alginate lyase (AlgL) in clearing the periplasm of alginates not exported to the extracellular environment
-
Bakkevig, K., Sletta, H., Gimmestad, M., Aune, R., Ertesvåg, H., Degnes, K., and Christensen, B. E., Ellingsen, T. E., and Valla, S. (2005) Role of the Pseudomonas fluorescens alginate lyase (AlgL) in clearing the periplasm of alginates not exported to the extracellular environment. J. Bacteriol. 187, 8375-8384
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8375-8384
-
-
Bakkevig, K.1
Sletta, H.2
Gimmestad, M.3
Aune, R.4
Ertesvåg, H.5
Degnes, K.6
Christensen, B.E.7
Ellingsen, T.E.8
Valla, S.9
-
30
-
-
25444481824
-
Role of an alginate lyase for alginate transport in mucoid pseudomonas aeruginosa
-
Jain, S., and Ohman, D. E. (2005) Role of an alginate lyase for alginate transport in mucoid Pseudomonas aeruginosa. Infection and immunity 73, 6429-6436
-
(2005)
Infection and Immunity
, vol.73
, pp. 6429-6436
-
-
Jain, S.1
Ohman, D.E.2
-
31
-
-
84873569415
-
Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction
-
Steiner, S., Lori, C., Boehm, A., and Jenal, U. (2013) Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction. EMBO J. 32, 354-368
-
(2013)
EMBO J.
, vol.32
, pp. 354-368
-
-
Steiner, S.1
Lori, C.2
Boehm, A.3
Jenal, U.4
-
32
-
-
0032540949
-
Characterization of the N-acetylglucosaminyltransferase activity involved in the biosynthesis of the staphylococcus epidermidis polysaccharide intercellular adhesin
-
Gerke, C., Kraft, A., Süssmuth, R., Schweitzer, O., and Götz, F. (1998) Characterization of the N-acetylglucosaminyltransferase activity involved in the biosynthesis of the Staphylococcus epidermidis polysaccharide intercellular adhesin. J. Biol. Chem. 273, 18586-18593
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 18586-18593
-
-
Gerke, C.1
Kraft, A.2
Süssmuth, R.3
Schweitzer, O.4
Götz, F.5
-
33
-
-
0024967696
-
Developmentally regulated late mRNAs in the encystment of physarum polycephalum plasmodia
-
Savard, L., Laroche, A., Lemieux, G., and Pallotta, D. (1989) Developmentally regulated late mRNAs in the encystment of Physarum polycephalum plasmodia. Biochim. Biophys. Acta 1007, 264-269
-
(1989)
Biochim. Biophys. Acta
, vol.1007
, pp. 264-269
-
-
Savard, L.1
Laroche, A.2
Lemieux, G.3
Pallotta, D.4
-
34
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen, T. N., Brunak, S., von Heijne, G., and Nielsen, H. (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785-786
-
(2011)
Nat. Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
35
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
36
-
-
63849246525
-
Protein structure prediction on the web: A case study using the phyre server
-
Kelley, L. A., and Sternberg, M. J. (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc. 4, 363-371
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
37
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
38
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Käll, L., Krogh, A., and Sonnhammer, E. L. (2004) A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338, 1027-1036
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 1027-1036
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
39
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., and McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., and Gibson, T. J., and Higgins, D. G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
40
-
-
77954333594
-
Aspergillusfumigatus MedA governs adherence, host cell interactions and virulence
-
Gravelat, F. N., Ejzykowicz, D. E., Chiang, L. Y., Chabot, J. C., Urb, M., Macdonald, K. D., al-Bader, N., Filler, S. G., and Sheppard, D. C. (2010) Aspergillusfumigatus MedA governs adherence, host cell interactions and virulence. Cell. Microbiol. 12, 473-488
-
(2010)
Cell. Microbiol.
, vol.12
, pp. 473-488
-
-
Gravelat, F.N.1
Ejzykowicz, D.E.2
Chiang, L.Y.3
Chabot, J.C.4
Urb, M.5
Macdonald, K.D.6
Al-Bader, N.7
Filler, S.G.8
Sheppard, D.C.9
-
41
-
-
84858131811
-
Targeted gene deletion in aspergillus fumigatus using the hygromycin-resistance split-marker approach
-
Gravelat, F. N., Askew, D. S., and Sheppard, D. C. (2012) Targeted gene deletion in Aspergillus fumigatus using the hygromycin-resistance split-marker approach. Methods Mol. Biol. 845, 119-130
-
(2012)
Methods Mol. Biol.
, vol.845
, pp. 119-130
-
-
Gravelat, F.N.1
Askew, D.S.2
Sheppard, D.C.3
-
42
-
-
0034793650
-
Structure of E. Coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase reveals similarity to the purine nucleoside phosphorylases
-
Lee, J. E., and Cornell, K. A., Riscoe, M. K., and Howell, P. L. (2001) Structure of E. coli 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase reveals similarity to the purine nucleoside phosphorylases. Structure 9, 941-953
-
(2001)
Structure
, vol.9
, pp. 941-953
-
-
Lee, J.E.1
Cornell, K.A.2
Riscoe, M.K.3
Howell, P.L.4
-
43
-
-
0031059866
-
Processing of x-ray diffraction data collection in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collection in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
44
-
-
76449098262
-
PHENIX: A comprehensive python-based system for macromolecular structure solution
-
Adams, P. D., and Afonine, P. V., Bunkóczi, G., and Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., and Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
-
45
-
-
84884682632
-
Collaboration gets the most out of software
-
Morin, A., Eisenbraun, B., Key, J., Sanschagrin, P. C., Timony, M. A., Ottaviano, M., and Sliz, P. (2013) Collaboration gets the most out of software. eLife 2, e01456
-
(2013)
ELife
, vol.2
-
-
Morin, A.1
Eisenbraun, B.2
Key, J.3
Sanschagrin, P.C.4
Timony, M.A.5
Ottaviano, M.6
Sliz, P.7
-
48
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenström, P.2
-
49
-
-
77954257799
-
ConSurf 2010: Calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
-
Ashkenazy, H., Erez, E., Martz, E., Pupko, T., and Ben-Tal, N. (2010) ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38, W529-W533
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W529-W533
-
-
Ashkenazy, H.1
Erez, E.2
Martz, E.3
Pupko, T.4
Ben-Tal, N.5
-
50
-
-
2542445427
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
Glaser, F., Pupko, T., Paz, I., Bell, R. E., Bechor-Shental, D., Martz, E., and Ben-Tal, N. (2003) ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. Bioinformatics 19, 163-164
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
Martz, E.6
Ben-Tal, N.7
-
51
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
Landau, M., Mayrose, I., Rosenberg, Y., Glaser, F., Martz, E., Pupko, T., and Ben-Tal, N. (2005) ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33, W299-W302
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W299-W302
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
-
52
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
53
-
-
0035137275
-
Colorimetric method for the determination of lipoxygenase activity
-
Anthon, G. E., and Barrett, D. M. (2001) Colorimetric method for the determination of lipoxygenase activity. J. Agric. Food Chem. 49, 32-37
-
(2001)
J. Agric. Food Chem.
, vol.49
, pp. 32-37
-
-
Anthon, G.E.1
Barrett, D.M.2
-
54
-
-
78149297086
-
CAZymes analysis toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
-
Park, B. H., Karpinets, T. V., and Syed., M. H., Leuze, M. R., and Uberbacher, E. C. (2010) CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20, 1574-1584
-
(2010)
Glycobiology
, vol.20
, pp. 1574-1584
-
-
Park, B.H.1
Karpinets, T.V.2
Syed, M.H.3
Leuze, M.R.4
Uberbacher, E.C.5
-
55
-
-
0026055308
-
A classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat, B. (1991) A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 280, 309-316
-
(1991)
Biochem. J.
, vol.280
, pp. 309-316
-
-
Henrissat, B.1
-
56
-
-
0030733350
-
Structural and sequence-based classification of glycoside hydrolases
-
Henrissat, B., and Davies, G. (1997) Structural and sequence-based classification of glycoside hydrolases. Curr. Opin. Struct. Biol. 7, 637-644
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 637-644
-
-
Henrissat, B.1
Davies, G.2
-
57
-
-
0035949643
-
High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis
-
Papanikolau, Y., Prag, G., Tavlas, G., Vorgias, C. E., and Oppenheim, A. B., and Petratos, K. (2001) High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis. Biochemistry 40, 11338-11343
-
(2001)
Biochemistry
, vol.40
, pp. 11338-11343
-
-
Papanikolau, Y.1
Prag, G.2
Tavlas, G.3
Vorgias, C.E.4
Oppenheim, A.B.5
Petratos, K.6
-
58
-
-
0035979240
-
Structural insights into the catalytic mechanism of a family 18 exo-chitinase
-
van Aalten, D. M., Komander, D., Synstad, B., Gåseidnes, S., and Peter, M. G., and Eijsink, V. G. (2001) Structural insights into the catalytic mechanism of a family 18 exo-chitinase. Proc. Natl. Acad. Sci. U.S.A. 98, 8979-8984
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 8979-8984
-
-
Van Aalten, D.M.1
Komander, D.2
Synstad, B.3
Gåseidnes, S.4
Peter, M.G.5
Eijsink, V.G.6
-
59
-
-
33645735070
-
Structural insights into the mechanism and inhibition of eukaryotic O-glcnac hydrolysis
-
Rao, F. V., Dorfmueller, H. C., Villa, F., Allwood, M., Eggleston, I. M., and van Aalten, D. M. (2006) Structural insights into the mechanism and inhibition of eukaryotic O-GlcNAc hydrolysis. EMBO J. 25, 1569-1578
-
(2006)
EMBO J.
, vol.25
, pp. 1569-1578
-
-
Rao, F.V.1
Dorfmueller, H.C.2
Villa, F.3
Allwood, M.4
Eggleston, I.M.5
Van Aalten, D.M.6
-
60
-
-
77950511400
-
Catalytic mechanism of human α-galactosidase
-
Guce, A. I., and Clark, N. E., Salgado, E. N., Ivanen, D. R., Kulminskaya, A. A., Brumer, H., 3rd, and Garman, S. C. (2010) Catalytic mechanism of human α-galactosidase. J. Biol. Chem. 285, 3625-3632
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3625-3632
-
-
Guce, A.I.1
Clark, N.E.2
Salgado, E.N.3
Ivanen, D.R.4
Kulminskaya, A.A.5
Brumer, H.6
Garman, S.C.7
-
61
-
-
0347683443
-
The crystal structure of the calystegia sepium agglutinin reveals a novel quaternary arrangement of lectin subunits with a β-prism fold
-
Bourne, Y., Roig-Zamboni, V., Barre, A., and Peumans, W. J., Astoul, C. H., Van Damme, E. J., and Rougé, P. (2004) The crystal structure of the Calystegia sepium agglutinin reveals a novel quaternary arrangement of lectin subunits with a β-prism fold. J. Biol. Chem. 279, 527-533
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 527-533
-
-
Bourne, Y.1
Roig-Zamboni, V.2
Barre, A.3
Peumans, W.J.4
Astoul, C.H.5
Van Damme, E.J.6
Rougé, P.7
-
62
-
-
84861165112
-
Chapter 8: The crystallization and structural analysis of cellulases (and other glycoside hydrolases): Strategies and tactics
-
Roberts, S. M., and Davies, G. J. (2012) Chapter 8: The crystallization and structural analysis of cellulases (and other glycoside hydrolases): strategies and tactics. Methods Enzymol. 510, 141-168
-
(2012)
Methods Enzymol.
, vol.510
, pp. 141-168
-
-
Roberts, S.M.1
Davies, G.J.2
-
63
-
-
84929282872
-
Listeria monocytogenes exopolysaccharide: Origin, structure, biosynthetic machinery and c-di-GMP-dependent regulation
-
Köseoglu, V. K., Heiss, C., Azadi, P., Topchiy, E., Güvener, Z. T., Lehmann, T. E., and Miller, K. W., and Gomelsky, M. (2015) Listeria monocytogenes exopolysaccharide: origin, structure, biosynthetic machinery and c-di-GMP-dependent regulation. Mol. Microbiol. 96, 728-743
-
(2015)
Mol. Microbiol.
, vol.96
, pp. 728-743
-
-
Köseoglu, V.K.1
Heiss, C.2
Azadi, P.3
Topchiy, E.4
Güvener, Z.T.5
Lehmann, T.E.6
Miller, K.W.7
Gomelsky, M.8
-
64
-
-
79955969731
-
Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ
-
Mazur, O., and Zimmer, J. (2011) Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ. J. Biol. Chem. 286, 17601-17606
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 17601-17606
-
-
Mazur, O.1
Zimmer, J.2
-
65
-
-
0031587296
-
The crystal structure of the catalytic core domain of endoglucanase I from trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes
-
Kleywegt, G. J., and Zou, J. Y., Divne, C., and Davies, G. J., Sinning, I., Stâhlberg, J., Reinikainen, T., Srisodsuk, M., Teeri, T. T., and Jones, T. A. (1997) The crystal structure of the catalytic core domain of endoglucanase I from Trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes. J. Mol. Biol. 272, 383-397
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 383-397
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Divne, C.3
Davies, G.J.4
Sinning, I.5
Stâhlberg, J.6
Reinikainen, T.7
Srisodsuk, M.8
Teeri, T.T.9
Jones, T.A.10
-
66
-
-
84867792150
-
Hallmarks of processivity in glycoside hydrolases from crystallographic and computational studies of the serratia marcescens chitinases
-
Payne, C. M., Baban, J., Horn, S. J., Backe, P. H., Arvai, A. S., Dalhus, B., Bjørås, M., Eijsink, V. G., Sørlie, M., Beckham, G. T., and Vaaje-Kolstad, G. (2012) Hallmarks of processivity in glycoside hydrolases from crystallographic and computational studies of the Serratia marcescens chitinases. J. Biol. Chem. 287, 36322-36330
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 36322-36330
-
-
Payne, C.M.1
Baban, J.2
Horn, S.J.3
Backe, P.H.4
Arvai, A.S.5
Dalhus, B.6
Bjørås, M.7
Eijsink, V.G.8
Sørlie, M.9
Beckham, G.T.10
Vaaje-Kolstad, G.11
-
67
-
-
0029645404
-
Structures and mechanisms of glycosyl hydrolases
-
Davies, G., and Henrissat, B. (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3, 853-859
-
(1995)
Structure
, vol.3
, pp. 853-859
-
-
Davies, G.1
Henrissat, B.2
-
68
-
-
84860188732
-
Biosynthesis of the pseudomonas aeruginosa extracellular polysaccharides, alginate, pel, and psl
-
Franklin, M. J., and Nivens, D. E., Weadge, J. T., and Howell, P. L. (2011) Biosynthesis of the Pseudomonas aeruginosa extracellular polysaccharides, Alginate, Pel, and Psl. Front. Microbiol. 2, 167
-
(2011)
Front. Microbiol.
, vol.2
, pp. 167
-
-
Franklin, M.J.1
Nivens, D.E.2
Weadge, J.T.3
Howell, P.L.4
-
69
-
-
0036399960
-
Effects of endogenous endo-β-1, 4-glucanase on cellulose biosynthesis in acetobacterxylinum ATCC23769
-
Kawano, S., Tajima, K., Kono, H., Erata, T., Munekata, M., and Takai, M. (2002) Effects of endogenous endo-β-1, 4-glucanase on cellulose biosynthesis in Acetobacterxylinum ATCC23769. J. Biosci. Bioeng. 94, 275-281
-
(2002)
J. Biosci. Bioeng.
, vol.94
, pp. 275-281
-
-
Kawano, S.1
Tajima, K.2
Kono, H.3
Erata, T.4
Munekata, M.5
Takai, M.6
-
70
-
-
0032200058
-
Evidence that a β-1, 4-endoglucanase secreted by acetobacter xylinum plays an essential role for the formation of cellulose fiber
-
Koo, H. M., and Song, S. H., Pyun, Y. R., and Kim, Y. S. (1998) Evidence that a β-1, 4-endoglucanase secreted by Acetobacter xylinum plays an essential role for the formation of cellulose fiber. Biosci. Biotechnol. Biochem. 62, 2257-2259
-
(1998)
Biosci. Biotechnol. Biochem.
, vol.62
, pp. 2257-2259
-
-
Koo, H.M.1
Song, S.H.2
Pyun, Y.R.3
Kim, Y.S.4
|