-
1
-
-
0035061538
-
IRF family of transcription factors as regulators of host defense
-
Taniguchi, T., Ogasawara, K., Takaoka, A., and Tanaka, N. (2001) IRF family of transcription factors as regulators of host defense. Annu. Rev. Immunol. 19, 623-655
-
(2001)
Annu. Rev. Immunol.
, vol.19
, pp. 623-655
-
-
Taniguchi, T.1
Ogasawara, K.2
Takaoka, A.3
Tanaka, N.4
-
2
-
-
33646377870
-
Interferon signalling network in innate defence
-
Takaoka, A., and Yanai, H. (2006) Interferon signalling network in innate defence. Cell Microbiol. 8, 907-922
-
(2006)
Cell Microbiol.
, vol.8
, pp. 907-922
-
-
Takaoka, A.1
Yanai, H.2
-
3
-
-
34250793069
-
The interferon regulatory factor family in host defense: Mechanism of action
-
Ozato, K., Tailor, P., and Kubota, T. (2007) The interferon regulatory factor family in host defense: mechanism of action. J. Biol. Chem. 282, 20065-20069
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 20065-20069
-
-
Ozato, K.1
Tailor, P.2
Kubota, T.3
-
4
-
-
34347244891
-
The IRF family, revisited
-
Paun, A., and Pitha, P. M. (2007) The IRF family, revisited. Biochimie 89, 744-753
-
(2007)
Biochimie
, vol.89
, pp. 744-753
-
-
Paun, A.1
Pitha, P.M.2
-
5
-
-
42649114059
-
The IRF family transcription factors in immunity and oncogenesis
-
Tamura, T., Yanai, H., Savitsky, D., and Taniguchi, T. (2008) The IRF family transcription factors in immunity and oncogenesis. Annu. Rev. Immunol. 26, 535-584
-
(2008)
Annu. Rev. Immunol.
, vol.26
, pp. 535-584
-
-
Tamura, T.1
Yanai, H.2
Savitsky, D.3
Taniguchi, T.4
-
6
-
-
0023647926
-
Interferon-β gene regulation: Tandemly repeated sequences of a synthetic 6 bp oligomer function as a virus-inducible enhancer
-
Fujita, T., Shibuya, H., Hotta, H., Yamanishi, K., and Taniguchi, T. (1987) Interferon-β gene regulation: tandemly repeated sequences of a synthetic 6 bp oligomer function as a virus-inducible enhancer. Cell 49, 357-367
-
(1987)
Cell
, vol.49
, pp. 357-367
-
-
Fujita, T.1
Shibuya, H.2
Hotta, H.3
Yamanishi, K.4
Taniguchi, T.5
-
7
-
-
0023931312
-
Overlapping positive and negative regulatory domains of the human β-interferon gene
-
Goodbourn, S., and Maniatis, T. (1988) Overlapping positive and negative regulatory domains of the human β-interferon gene. Proc. Natl. Acad. Sci. U.S.A. 85, 1447-1451
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 1447-1451
-
-
Goodbourn, S.1
Maniatis, T.2
-
8
-
-
0031933646
-
Structure of IRF-1 with bound DNA reveals determinants of interferon regulation
-
Escalante, C. R., Yie, J., Thanos, D., and Aggarwal, A. K. (1998) Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. Nature 391, 103-106
-
(1998)
Nature
, vol.391
, pp. 103-106
-
-
Escalante, C.R.1
Yie, J.2
Thanos, D.3
Aggarwal, A.K.4
-
9
-
-
0033568642
-
Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences
-
Fujii, Y., Shimizu, T., Kusumoto, M., Kyogoku, Y., Taniguchi, T., and Hakoshima, T. (1999) Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences. EMBO J. 18, 5028-5041
-
(1999)
EMBO J.
, vol.18
, pp. 5028-5041
-
-
Fujii, Y.1
Shimizu, T.2
Kusumoto, M.3
Kyogoku, Y.4
Taniguchi, T.5
Hakoshima, T.6
-
10
-
-
0032841028
-
Interferon regulatory factors: The next generation
-
Mamane, Y., Heylbroeck, C., Génin, P., Algarté, M., Servant, M. J., LePage, C., DeLuca, C., Kwon, H., Lin, R., and Hiscott, J. (1999) Interferon regulatory factors: the next generation. Gene 237, 1-14
-
(1999)
Gene
, vol.237
, pp. 1-14
-
-
Mamane, Y.1
Heylbroeck, C.2
Génin, P.3
Algarté, M.4
Servant, M.J.5
LePage, C.6
DeLuca, C.7
Kwon, H.8
Lin, R.9
Hiscott, J.10
-
11
-
-
0242574745
-
Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation
-
Qin, B. Y., Liu, C., Lam, S.S., Srinath, H., Delston, R., Correia, J.J., Derynck, R., and Lin, K. (2003) Crystal structure of IRF-3 reveals mechanism of autoinhibition and virus-induced phosphoactivation. Nat. Struct. Biol. 10, 913-921
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 913-921
-
-
Qin, B.Y.1
Liu, C.2
Lam, S.S.3
Srinath, H.4
Delston, R.5
Correia, J.J.6
Derynck, R.7
Lin, K.8
-
12
-
-
0242658895
-
X-ray crystal structure of IRF-3 and its functional implications
-
Takahasi, K., Suzuki, N. N., Horiuchi, M., Mori, M., Suhara, W., Okabe, Y., Fukuhara, Y., Terasawa, H., Akira, S., Fujita, T., and Inagaki, F. (2003) X-ray crystal structure of IRF-3 and its functional implications. Nat. Struct. Biol. 10, 922-927
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 922-927
-
-
Takahasi, K.1
Suzuki, N.N.2
Horiuchi, M.3
Mori, M.4
Suhara, W.5
Okabe, Y.6
Fukuhara, Y.7
Terasawa, H.8
Akira, S.9
Fujita, T.10
Inagaki, F.11
-
13
-
-
0032481352
-
Direct triggering of the type I interferon system by virus infection: Activation of a transcription factor complex containing IRF-3 and CBP/p300
-
Yoneyama, M., Suhara, W., Fukuhara, Y., Fukuda, M., Nishida, E., and Fujita, T. (1998) Direct triggering of the type I interferon system by virus infection: activation of a transcription factor complex containing IRF-3 and CBP/p300. EMBO J. 17, 1087-1095
-
(1998)
EMBO J.
, vol.17
, pp. 1087-1095
-
-
Yoneyama, M.1
Suhara, W.2
Fukuhara, Y.3
Fukuda, M.4
Nishida, E.5
Fujita, T.6
-
14
-
-
0032915860
-
Structural and functional analysis of interferon regulatory factor 3: Localization of the transactivation and autoinhibitory domains
-
Lin, R., Mamane, Y., and Hiscott, J. (1999) Structural and functional analysis of interferon regulatory factor 3: localization of the transactivation and autoinhibitory domains. Mol. Cell Biol. 19, 2465-2474
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 2465-2474
-
-
Lin, R.1
Mamane, Y.2
Hiscott, J.3
-
15
-
-
0035808446
-
Identification of distinct signaling pathways leading to the phosphorylation of interferon regulatory factor 3
-
Servant, M. J., ten Oever, B., LePage, C., Conti, L., Gessani, S., Julkunen, I., Lin, R., and Hiscott, J. (2001) Identification of distinct signaling pathways leading to the phosphorylation of interferon regulatory factor 3. J. Biol. Chem. 276, 355-363
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 355-363
-
-
Servant, M.J.1
Ten Oever, B.2
LePage, C.3
Conti, L.4
Gessani, S.5
Julkunen, I.6
Lin, R.7
Hiscott, J.8
-
16
-
-
0034461577
-
Phosphorylation-induced dimerization of interferon regulatory factor 7 unmasks DNA binding and a bipartite transactivation domain
-
Marié, I., Smith, E., Prakash, A., and Levy, D. E. (2000) Phosphorylation-induced dimerization of interferon regulatory factor 7 unmasks DNA binding and a bipartite transactivation domain. Mol. Cell Biol. 20, 8803-8814
-
(2000)
Mol. Cell Biol.
, vol.20
, pp. 8803-8814
-
-
Marié, I.1
Smith, E.2
Prakash, A.3
Levy, D.E.4
-
17
-
-
0036311933
-
Multiple regulatory domains of IRF-5 control activation, cellular localization, and induction of chemokines that mediate recruitment of T lymphocytes
-
Barnes, B. J., and Kellum, M. J., Field, A. E., and Pitha, P. M. (2002) Multiple regulatory domains of IRF-5 control activation, cellular localization, and induction of chemokines that mediate recruitment of T lymphocytes. Mol. Cell Biol. 22, 5721-5740
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 5721-5740
-
-
Barnes, B.J.1
Kellum, M.J.2
Field, A.E.3
Pitha, P.M.4
-
18
-
-
0029073345
-
Pip, a novel IRF family member, is a lymphoid-specific PU.1-dependent transcriptional activator
-
Eisenbeis, C. F., Singh, H., and Storb, U. (1995) Pip, a novel IRF family member, is a lymphoid-specific PU.1-dependent transcriptional activator. Genes Dev. 9, 1377-1387
-
(1995)
Genes Dev.
, vol.9
, pp. 1377-1387
-
-
Eisenbeis, C.F.1
Singh, H.2
Storb, U.3
-
19
-
-
0029069958
-
Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon-stimulated response element (ISRE)
-
Matsuyama, T., Grossman, A., Mittrücker, H. W., Siderovski, D. P., Kiefer, F., Kawakami, T., Richardson, C. D., Taniguchi, T., and Yoshinaga, S. K., and Mak, T.W. (1995) Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon-stimulated response element (ISRE). Nucleic Acids Res. 23, 2127-2136
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2127-2136
-
-
Matsuyama, T.1
Grossman, A.2
Mittrücker, H.W.3
Siderovski, D.P.4
Kiefer, F.5
Kawakami, T.6
Richardson, C.D.7
Taniguchi, T.8
Yoshinaga, S.K.9
Mak, T.W.10
-
20
-
-
0029928685
-
A novel interferon regulatory family transcription factor, ICSAT/Pip/LSIRF, that negatively regulates the activity of interferon-regulated genes
-
Yamagata, T., Nishida, J., Tanaka, S., Sakai, R., Mitani, K., Yoshida, M., Taniguchi, T., Yazaki, Y., and Hirai, H. (1996) A novel interferon regulatory family transcription factor, ICSAT/Pip/LSIRF, that negatively regulates the activity of interferon-regulated genes. Mol. Cell Biol. 16, 1283-1294
-
(1996)
Mol. Cell Biol.
, vol.16
, pp. 1283-1294
-
-
Yamagata, T.1
Nishida, J.2
Tanaka, S.3
Sakai, R.4
Mitani, K.5
Yoshida, M.6
Taniguchi, T.7
Yazaki, Y.8
Hirai, H.9
-
21
-
-
79952155359
-
Transcriptional control of adipose lipid handling by IRF4
-
Eguchi, J., Wang, X., Yu, S., Kershaw, E. E., Chiu, P. C., Dushay, J., Estall, J. L., Klein, U., Maratos-Flier, E., and Rosen, E. D. (2011) Transcriptional control of adipose lipid handling by IRF4. CellMetab. 13, 249-259
-
(2011)
CellMetab.
, vol.13
, pp. 249-259
-
-
Eguchi, J.1
Wang, X.2
Yu, S.3
Kershaw, E.E.4
Chiu, P.C.5
Dushay, J.6
Estall, J.L.7
Klein, U.8
Maratos-Flier, E.9
Rosen, E.D.10
-
22
-
-
84878913857
-
Role of interferon regulatory factor 4 in the regulation of pathological cardiac hypertrophy
-
Jiang, D. S., and Bian, Z. Y., Zhang, Y., Zhang, S. M., Liu, Y., Zhang, R., Chen, Y., Yang, Q., and Zhang, X. D., Fan, G. C., and Li, H. (2013) Role of interferon regulatory factor 4 in the regulation of pathological cardiac hypertrophy. Hypertension 61, 1193-1202
-
(2013)
Hypertension
, vol.61
, pp. 1193-1202
-
-
Jiang, D.S.1
Bian, Z.Y.2
Zhang, Y.3
Zhang, S.M.4
Liu, Y.5
Zhang, R.6
Chen, Y.7
Yang, Q.8
Zhang, X.D.9
Fan, G.C.10
Li, H.11
-
23
-
-
84899928972
-
IRF4 is a novel mediator for neuronal survival in ischaemic stroke
-
Guo, S., Li, Z.Z., Jiang, D.S., Lu, Y. Y., Liu, Y., Gao, L., Zhang, S.M., Lei, H., Zhu, L. H., and Zhang, X. D., Liu, D. P., and Li, H. (2014) IRF4 is a novel mediator for neuronal survival in ischaemic stroke. Cell Death Differ. 21, 888-903
-
(2014)
Cell Death Differ.
, vol.21
, pp. 888-903
-
-
Guo, S.1
Li, Z.Z.2
Jiang, D.S.3
Lu, Y.Y.4
Liu, Y.5
Gao, L.6
Zhang, S.M.7
Lei, H.8
Zhu, L.H.9
Zhang, X.D.10
Liu, D.P.11
Li, H.12
-
24
-
-
84867861268
-
BATF-JUN is critical for IRF4-mediated transcription in T cells
-
Li, P., Spolski, R., Liao, W., Wang, L., and Murphy, T. L., Murphy, K. M., and Leonard, W. J. (2012) BATF-JUN is critical for IRF4-mediated transcription in T cells. Nature 490, 543-546
-
(2012)
Nature
, vol.490
, pp. 543-546
-
-
Li, P.1
Spolski, R.2
Liao, W.3
Wang, L.4
Murphy, T.L.5
Murphy, K.M.6
Leonard, W.J.7
-
25
-
-
84869116884
-
A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes
-
Glasmacher, E., Agrawal, S., Chang, A. B., and Murphy, T. L., Zeng, W., Vander Lugt, B., Khan, A. A., Ciofani, M., and Spooner, C. J., Rutz, S., Hackney, J., Nurieva, R., and Escalante, C. R., Ouyang, W., Littman, D. R., and Murphy, K. M., and Singh, H. (2012) A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes. Science 338, 975-980
-
(2012)
Science
, vol.338
, pp. 975-980
-
-
Glasmacher, E.1
Agrawal, S.2
Chang, A.B.3
Murphy, T.L.4
Zeng, W.5
Vander Lugt, B.6
Khan, A.A.7
Ciofani, M.8
Spooner, C.J.9
Rutz, S.10
Hackney, J.11
Nurieva, R.12
Escalante, C.R.13
Ouyang, W.14
Littman, D.R.15
Murphy, K.M.16
Singh, H.17
-
26
-
-
84867884822
-
Compensatory dendritic cell development mediated by BATF-IRF interactions
-
KC W.
-
Tussiwand, R., and Lee, W. L., Murphy, T. L., Mashayekhi, M., KC, W., Al-bring, J. C., Satpathy, A. T., Rotondo, J. A., Edelson, B. T., Kretzer, N. M., Wu, X., Weiss, L. A., Glasmacher, E., Li, P., Liao, W., Behnke, M., Lam, S. S., Aurthur, C. T., Leonard, W. J., Singh, H., Stallings, C. L., Sibley, L. D., Schreiber, R. D., and Murphy, K. M. (2012) Compensatory dendritic cell development mediated by BATF-IRF interactions. Nature 490, 502-507
-
(2012)
Nature
, vol.490
, pp. 502-507
-
-
Tussiwand, R.1
Lee, W.L.2
Murphy, T.L.3
Mashayekhi, M.4
Al-Bring, J.C.5
Satpathy, A.T.6
Rotondo, J.A.7
Edelson, B.T.8
Kretzer, N.M.9
Wu, X.10
Weiss, L.A.11
Glasmacher, E.12
Li, P.13
Liao, W.14
Behnke, M.15
Lam, S.S.16
Aurthur, C.T.17
Leonard, W.J.18
Singh, H.19
Stallings, C.L.20
Sibley, L.D.21
Schreiber, R.D.22
Murphy, K.M.23
more..
-
27
-
-
0033400453
-
Lineage-spacific modulation of interleukin 4 signaling by interferon regulatory factor 4
-
Gupta, S., Jiang, M., Anthony, A., and Pernis, A. B. (1999) Lineage-spacific modulation of interleukin 4 signaling by interferon regulatory factor 4. J. Exp. Med. 190, 1837-1848
-
(1999)
J. Exp. Med.
, vol.190
, pp. 1837-1848
-
-
Gupta, S.1
Jiang, M.2
Anthony, A.3
Pernis, A.B.4
-
28
-
-
0026584945
-
PU.1 recruits a second nuclear factor to a site important for immunoglobulin κ3' enhancer activity
-
Pongubala, J. M., Nagulapalli, S., Klemsz, M. J., and McKercher, S. R., Maki, R. A., and Atchison, M. L. (1992) PU.1 recruits a second nuclear factor to a site important for immunoglobulin κ3' enhancer activity. Mol. Cell Biol. 12, 368-378
-
(1992)
Mol. Cell Biol.
, vol.12
, pp. 368-378
-
-
Pongubala, J.M.1
Nagulapalli, S.2
Klemsz, M.J.3
McKercher, S.R.4
Maki, R.A.5
Atchison, M.L.6
-
29
-
-
84903989695
-
IRF4 is a key thermogenic transcriptional partner of PGC-1α
-
Kong, X., Banks, A., Liu, T., Kazak, L., and Rao, R. R., Cohen, P., Wang, X., Yu, S., Lo, J. C., Tseng, Y. H., Cypess, A. M., Xue, R., Kleiner, S., Kang, S., Spiegelman, B. M., and Rosen, E. D. (2014) IRF4 is a key thermogenic transcriptional partner of PGC-1α. Cell 158, 69-83
-
(2014)
Cell
, vol.158
, pp. 69-83
-
-
Kong, X.1
Banks, A.2
Liu, T.3
Kazak, L.4
Rao, R.R.5
Cohen, P.6
Wang, X.7
Yu, S.8
Lo, J.C.9
Tseng, Y.H.10
Cypess, A.M.11
Xue, R.12
Kleiner, S.13
Kang, S.14
Spiegelman, B.M.15
Rosen, E.D.16
-
30
-
-
0031907705
-
A two-step mechanism for recruitment of pip by PU.1
-
Perkel, J. M., and Atchison, M. L. (1998) A two-step mechanism for recruitment of Pip by PU.1. J. Immunol. 160, 241-252
-
(1998)
J. Immunol.
, vol.160
, pp. 241-252
-
-
Perkel, J.M.1
Atchison, M.L.2
-
31
-
-
0032568854
-
Cooperative interaction between the DNA-binding domains of PU.1 and IRF4
-
Yee, A. A., Yin, P., Siderovski, D. P., and Mak, T. W., Litchfield, D. W., and Arrowsmith, C. H. (1998) Cooperative interaction between the DNA-binding domains of PU.1 and IRF4. J. Mol. Biol. 279, 1075-1083
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1075-1083
-
-
Yee, A.A.1
Yin, P.2
Siderovski, D.P.3
Mak, T.W.4
Litchfield, D.W.5
Arrowsmith, C.H.6
-
32
-
-
0033557741
-
Assembly requirements of PU.1-pip (IRF-4) activator complexes: Inhibiting function in vivo using fused dimers
-
Brass, A. L., and Zhu, A. Q., and Singh, H. (1999) Assembly requirements of PU.1-Pip (IRF-4) activator complexes: inhibiting function In vivo using fused dimers. EMBO J. 18, 977-991
-
(1999)
EMBO J.
, vol.18
, pp. 977-991
-
-
Brass, A.L.1
Zhu, A.Q.2
Singh, H.3
-
33
-
-
84878195944
-
Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4
-
Ochiai, K., Maienschein-Cline, M., Simonetti, G., Chen, J., Rosenthal, R., Brink, R., and Chong, A. S., Klein, U, and Dinner, A. R., Singh, H., and Sciammas, R. (2013) Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4. Immunity 38, 918-929
-
(2013)
Immunity
, vol.38
, pp. 918-929
-
-
Ochiai, K.1
Maienschein-Cline, M.2
Simonetti, G.3
Chen, J.4
Rosenthal, R.5
Brink, R.6
Chong, A.S.7
Klein, U.8
Dinner, A.R.9
Singh, H.10
Sciammas, R.11
-
34
-
-
0000686943
-
Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: Structural and functional implications
-
Bazan, J. F., and Fletterick, R. J. (1988) Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications. Proc. Natl. Acad. Sci. U.S.A. 85, 7872-7876
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 7872-7876
-
-
Bazan, J.F.1
Fletterick, R.J.2
-
35
-
-
70350507764
-
-
University of New Hampshire, Durham, NH
-
Hayes, D., Laue, T., and Philo, J. (1995) Program Sednterp: Sedimentation Interpretation Program, University of New Hampshire, Durham, NH
-
(1995)
Program Sednterp: Sedimentation Interpretation Program
-
-
Hayes, D.1
Laue, T.2
Philo, J.3
-
36
-
-
0002498995
-
-
(Harding, S.E., Rowe, A. J., and Horton, J. C., eds) Royal Society of Chemistry, Cambridge, UK
-
Laue, T. M., and Shah, B. D., Ridgeway, T. M., and Pelletier, S. L. (1992) in Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S.E., Rowe, A. J., and Horton, J. C., eds) pp. 90-125, Royal Society of Chemistry, Cambridge, UK
-
(1992)
Analytical Ultracentrifugation in Biochemistry and Polymer Science
, pp. 90-125
-
-
Laue, T.M.1
Shah, B.D.2
Ridgeway, T.M.3
Pelletier, S.L.4
-
37
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. BiophysJ. 78, 1606-1619
-
(2000)
BiophysJ.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
38
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev, P. V., and Petoukhov, M. V., Volkov, V. V., and Svergun, D. I. (2006) ATSAS 2.1, a program package for small-angle scattering data analysis. J. Appl. Crystallogr. 39, 277-286
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
39
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun, D. (1992) Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25, 495-503
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.1
-
40
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun, D. I. (1999) Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 76, 2879-2886
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
41
-
-
0035010533
-
Determination of domain structure of proteins from x-ray solution scattering
-
Svergun, D.I., Petoukhov, M.V., and Koch, M.H. (2001) Determination of domain structure of proteins from x-ray solution scattering. Biophys. J. 80, 2946-2953
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
42
-
-
84935843728
-
Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy
-
Micsonai, A., Wien, F., Kernya, L., Lee, Y. H., Goto, Y., Réfrégiers, M., and Kardos, J. (2015) Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy. Proc. Natl. Acad. Sci. U.S.A. 112, E3095-3103
-
(2015)
Proc. Natl. Acad. Sci. U.S.A.
, vol.112
, pp. E3095-E3103
-
-
Micsonai, A.1
Wien, F.2
Kernya, L.3
Lee, Y.H.4
Goto, Y.5
Réfrégiers, M.6
Kardos, J.7
-
43
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
44
-
-
77949535720
-
Features and development of coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
45
-
-
55549138004
-
Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5
-
Chen, W., and Lam, S. S., Srinath, H., Jiang, Z., Correia, J. J., and Schiffer, C. A., Fitzgerald, K. A., Lin, K., Royer, W. E., Jr. (2008) Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5. Nat. Struct. Mol. Biol. 15, 1213-1220
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1213-1220
-
-
Chen, W.1
Lam, S.S.2
Srinath, H.3
Jiang, Z.4
Correia, J.J.5
Schiffer, C.A.6
Fitzgerald, K.A.7
Lin, K.8
Royer, W.E.9
-
46
-
-
0036179505
-
The role of IRF-4 in transcriptional regulation
-
Marecki, S., and Fenton, M. J. (2002) The role of IRF-4 in transcriptional regulation. J. Interferon Cytokine Res. 22, 121-133
-
(2002)
J. Interferon Cytokine Res.
, vol.22
, pp. 121-133
-
-
Marecki, S.1
Fenton, M.J.2
-
47
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
Dundas, J., Ouyang, Z., Tseng, J., Binkowski, A., Turpaz, Y., and Liang, J. (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res. 34, W116-W118
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W116-W118
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
48
-
-
0032740313
-
Proteinprotein and DNA-protein interactions affect the activity of lymphoid-specific IFN regulatory factors
-
Meraro, D., Hashmueli, S., Koren, B., Azriel, A., Oumard, A., Kirchhoff, S., Hauser, H., Nagulapalli, S., Atchison, M. L., and Levi, B. Z. (1999) Proteinprotein and DNA-protein interactions affect the activity of lymphoid-specific IFN regulatory factors. J. Immunol. 163, 6468-6478
-
(1999)
J. Immunol.
, vol.163
, pp. 6468-6478
-
-
Meraro, D.1
Hashmueli, S.2
Koren, B.3
Azriel, A.4
Oumard, A.5
Kirchhoff, S.6
Hauser, H.7
Nagulapalli, S.8
Atchison, M.L.9
Levi, B.Z.10
-
49
-
-
0036178323
-
ICSBP/IRF-8 transactivation: A tale of protein-protein interaction
-
Levi, B. Z., Hashmueli, S., Gleit-Kielmanowicz, M., Azriel, A., and Meraro, D. (2002) ICSBP/IRF-8 transactivation: a tale of protein-protein interaction. J. Interferon Cytokine Res. 22, 153-160
-
(2002)
J. Interferon Cytokine Res.
, vol.22
, pp. 153-160
-
-
Levi, B.Z.1
Hashmueli, S.2
Gleit-Kielmanowicz, M.3
Azriel, A.4
Meraro, D.5
-
50
-
-
67650992092
-
Structure and flexibility within proteins as identified through small angle x-ray scattering
-
Pelikan, M., and Hura, G. L., and Hammel, M. (2009) Structure and flexibility within proteins as identified through small angle x-ray scattering. Gen. Physiol. Biophys. 28, 174-189
-
(2009)
Gen. Physiol. Biophys.
, vol.28
, pp. 174-189
-
-
Pelikan, M.1
Hura, G.L.2
Hammel, M.3
-
51
-
-
0029763203
-
Pip, a lymphoid-restricted IRF, contains a regulatory domain that is important for autoinhibition and ternary complex formation with ets factor PU.1
-
Brass, A. L., Kehrli, E., Eisenbeis, C. F., Storb, U., and Singh, H. (1996) Pip, a lymphoid-restricted IRF, contains a regulatory domain that is important for autoinhibition and ternary complex formation with Ets factor PU.1. Genes Dev. 10, 2335-2347
-
(1996)
Genes Dev.
, vol.10
, pp. 2335-2347
-
-
Brass, A.L.1
Kehrli, E.2
Eisenbeis, C.F.3
Storb, U.4
Singh, H.5
-
52
-
-
84867508210
-
Validation of macromolecular flexibility insolution by small-angle x-ray scattering (SAXS)
-
Hammel, M. (2012) Validation of macromolecular flexibility insolution by small-angle x-ray scattering (SAXS). Eur. Biophys. J. 41, 789-799
-
(2012)
Eur. Biophys. J.
, vol.41
, pp. 789-799
-
-
Hammel, M.1
-
53
-
-
79958045453
-
Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the porod-debye law
-
Rambo, R. P., and Tainer, J. A. (2011) Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers 95, 559-571
-
(2011)
Biopolymers
, vol.95
, pp. 559-571
-
-
Rambo, R.P.1
Tainer, J.A.2
-
54
-
-
4444221565
-
UCSF chimera: A visualization system for exploratory research and analysis
-
Pettersen, E. F., and Goddard, T. D., Huang, C. C., Couch, G. S., and Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera: a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
55
-
-
0034663597
-
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff, J. A., and Barton, G. J. (2000) Application of multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins 40, 502-511
-
(2000)
Proteins
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
56
-
-
23244455562
-
Global rigid body modeling of macromolecular complexes against small-angle scattering data
-
Petoukhov, M. V., and Svergun, D. I. (2005) Global rigid body modeling of macromolecular complexes against small-angle scattering data. Biophys. J. 89, 1237-1250
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
57
-
-
84859782518
-
New developments in the ATSAS program package for small-angle scattering data analysis
-
Petoukhov, M. V., Franke, D., Shkumatov, A. V., Tria, G., and Kikhney, A. G., Gajda, M., Gorba, C., Mertens, H. D. T., Konarev, P. V., and Svergun, D. I. (2012) New developments in the ATSAS program package for small-angle scattering data analysis. J. Appl. Crystallogr. 45, 342-350
-
(2012)
J. Appl. Crystallogr.
, vol.45
, pp. 342-350
-
-
Petoukhov, M.V.1
Franke, D.2
Shkumatov, A.V.3
Tria, G.4
Kikhney, A.G.5
Gajda, M.6
Gorba, C.7
Mertens, H.D.T.8
Konarev, P.V.9
Svergun, D.I.10
-
58
-
-
84865130246
-
The linker of the interferon response factor 3 transcription factor is not unfolded
-
Shukla, H., Vaitiekunas, P., Majumdar, A. K., and Dragan, A. I., Dimitriadis, E. K., Kotova, S., Crane-Robinson, C., and Privalov, P. L. (2012) The linker of the interferon response factor 3 transcription factor is not unfolded. Biochemistry 51, 6320-6327
-
(2012)
Biochemistry
, vol.51
, pp. 6320-6327
-
-
Shukla, H.1
Vaitiekunas, P.2
Majumdar, A.K.3
Dragan, A.I.4
Dimitriadis, E.K.5
Kotova, S.6
Crane-Robinson, C.7
Privalov, P.L.8
-
59
-
-
0034144377
-
Posttranslational regulation of IRF-4 activity by the immunophilin FKBP52
-
Mamane, Y., Sharma, S., Petropoulos, L., Lin, R., and Hiscott, J. (2000) Posttranslational regulation of IRF-4 activity by the immunophilin FKBP52. Immunity 12, 129-140
-
(2000)
Immunity
, vol.12
, pp. 129-140
-
-
Mamane, Y.1
Sharma, S.2
Petropoulos, L.3
Lin, R.4
Hiscott, J.5
-
60
-
-
84891342118
-
Glycogen synthase kinase 3 negatively regulates IFN regulatory factor 3 transactivation through phosphorylation at its linker region
-
Wang, J. T., Chang, L.S., Chen, C. J., Doong, S. L., and Chang, C. W., and Chen, M. R. (2014) Glycogen synthase kinase 3 negatively regulates IFN regulatory factor 3 transactivation through phosphorylation at its linker region. Innate Immun. 20, 78-87
-
(2014)
Innate Immun.
, vol.20
, pp. 78-87
-
-
Wang, J.T.1
Chang, L.S.2
Chen, C.J.3
Doong, S.L.4
Chang, C.W.5
Chen, M.R.6
-
61
-
-
34250896716
-
Cutting edge: Autoantigen ro52 is an interferon inducible E3 ligase that ubiquitinates IRF-8 and enhances cytokine expression in macrophages
-
Kong, H. J., and Anderson, D. E., Lee, C. H., Jang, M. K., Tamura, T., Tailor, P., Cho, H. K., Cheong, J., Xiong, H., Morse, H. C., 3rd, and Ozato, K. (2007) Cutting edge: autoantigen Ro52 is an interferon inducible E3 ligase that ubiquitinates IRF-8 and enhances cytokine expression in macrophages. J. Immunol. 179, 26-30
-
(2007)
J. Immunol.
, vol.179
, pp. 26-30
-
-
Kong, H.J.1
Anderson, D.E.2
Lee, C.H.3
Jang, M.K.4
Tamura, T.5
Tailor, P.6
Cho, H.K.7
Cheong, J.8
Xiong, H.9
Morse, H.C.10
Ozato, K.11
-
62
-
-
79957566441
-
An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling
-
Sciammas, R., Li, Y., Warmflash, A., Song, Y., and Dinner, A. R., and Singh, H. (2011) An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling. Mol. Syst. Biol. 7, 495
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 495
-
-
Sciammas, R.1
Li, Y.2
Warmflash, A.3
Song, Y.4
Dinner, A.R.5
Singh, H.6
-
63
-
-
33747133955
-
Graded expression of interferon regulatory factor-4 coordinates isotype switching with plasma cell differentiation
-
Sciammas, R., and Shaffer, A. L., Schatz, J. H., Zhao, H., Staudt, L. M., and Singh, H. (2006) Graded expression of interferon regulatory factor-4 coordinates isotype switching with plasma cell differentiation. Immunity 25, 225-236
-
(2006)
Immunity
, vol.25
, pp. 225-236
-
-
Sciammas, R.1
Shaffer, A.L.2
Schatz, J.H.3
Zhao, H.4
Staudt, L.M.5
Singh, H.6
-
64
-
-
33745182931
-
Transcription factor IRF4 controls plasma cell differentiation and class-switch recombination
-
Klein, U., Casola, S., Cattoretti, G., Shen, Q., Lia, M., Mo, T., Ludwig, T., Rajewsky, K., and Dalla-Favera, R. (2006) Transcription factor IRF4 controls plasma cell differentiation and class-switch recombination. Nat. Immunol. 7, 773-782
-
(2006)
Nat. Immunol.
, vol.7
, pp. 773-782
-
-
Klein, U.1
Casola, S.2
Cattoretti, G.3
Shen, Q.4
Lia, M.5
Mo, T.6
Ludwig, T.7
Rajewsky, K.8
Dalla-Favera, R.9
-
65
-
-
84882940564
-
Accurate SAXS profile computation and its assessment by contrast variation experiments
-
Schneidman-Duhovny, D., Hammel, M., and Tainer, J. A., and Sali, A. (2013) Accurate SAXS profile computation and its assessment by contrast variation experiments. Biophys. J. 105, 962-974
-
(2013)
Biophys. J.
, vol.105
, pp. 962-974
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Tainer, J.A.3
Sali, A.4
-
66
-
-
77954280480
-
FoXS: A web server for rapid computation and fitting of SAXS profiles
-
Schneidman-Duhovny, D., Hammel, M., and Sali, A. (2010) FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38, W540-W544
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W540-W544
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
|