Alkaline pectinases: A review

Biocatalysis and Agricultural Biotechnology

Volumn 4, Issue 3, 2015, Pages 279-285

  Kohli, Pooja ^a   Gupta, Reena ^a  

^a HIMACHAL PRADESH UNIVERSITY   (India)

Author keywords

Alkaline pectinase; Bioscouring; Catalysis; Degumming; Pectin; Retting; Topology

Indexed keywords

EID: 84946496740     PISSN: 18788181     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bcab.2015.07.001     Document Type: Review

References (108)

1. Abbott D.W., Boraston A.B. Specific recognition of saturated and 4,5-unsaturated hexuronate sugars by a periplasmic binding protein involved in pectin catabolism. J. Mol. Biol. 2007, 369:759-770.
2. Abbott D.W., Boraston A.B. Structural biology of pectin degradation by Enterobacteriaceae. Microbiol. Mol. Biol. Rev. 2008, 72:301-316. 10.1128/MMBR.00038-07.
3. Ahlawat S., Dhiman S.S., Battan B., Mandhan R.P., Sharma J. Pectinase production byBacillus subtilis and its potential application in biopreparation of cotton and micropoly fabric. Process Biochem. 2009, 44:521-526.
4. Akhter N., Morshed M.A., Uddin A., Begum F., Sultan T., Azad A.K. Production of pectinase by Aspergillus niger cultured in solid state media. Int. J. Biosci. 2011, 1:33-42.
5. Alkorta I., Garbisu G., Llama M.J., Serra J.L. Industrial applications of pectic enzymes: a review. Process Biochem. 1998, 33:21-28.
6. Angayarkanni J., Palaniswamy M., Murugesan S., Swaminathan K. Improvement of tea leaves fermentation with Aspergillus spp. pectinase. J. Biosci. Bioeng. 2002, 94:299-303.
7. Anuradha K., Padma P.N., Venkateshwar S., Reddy G. Fungal isolates from natural pectic substrates for polygalacturonase and multi-enzyme production. Indian J. Microbiol. 2010, 50:339-344.
8. Baladhandayutham S., Thangavelu V. Optimization and kinetics of pectinase enzyme using Aspergillus niger by solid-state fermentation. Indian J. Sci. Technol. 2010, 3:867-870.
9. Banik S., Ghosh S.N. Pectinolytic activity of microorganisms in piling of jute. Indian J. Fibre Text. Res. 2008, 33:151-156.
10. Banu A.R., Devi M.K., Gnanaprabhal G.R., Pradeep B.V., Palaniswamy M. Production and characterization of pectinase enzyme from Penicillium chrysogenum. Indian J. Sci. Technol. 2010, 3:377-381.
11. Batool S., Asad M.J., Asad M.J., Naqvi S.M.S., Mahmood R.J., Guffar A., Gulfraz M., Hadri S.H. Production and partial purification of pectin lyase by Aspergillus niger grown on orange peels. Afr. J. Microbiol. Res. 2013, 7:1144-1149.
12. Beg Q.K., Bhushan B., Kapoor M., Hoondal G.S. Production and characterization of thermostable xylanase and pectinase from a Streptomyces sp. QG-11-3. J. Ind. Microbiol. Biotechnol. 2000, 24:396-402.
13. Benen J.A.E., Visser J. Pectate and pectin lyases. Handbook of Food Enzymology 2003, 1029-1041. Dekker, New York. J.R. Whitaker, A. Voragen, D.W.S. Wong (Eds.).
14. Bhardwaj V., Garg N. Production, purification of pectinase from Bacillus sp. MBRL576 isolate and its application in extraction of juice. Int. J. Sci. Res. 2001, 3:648-652.
15. Blanco P., Sieiro C., Reboredo N.M., Villa T.G. Cloning, molecular characterization and expression of an endopolygalacturonase encoding gene from Saccharomyces cerevisiae IM1-8b. FEMS Microbiol. Lett. 1998, 164:249-255.
16. Blandino A., Iqbalsyah T., Pandiella S.S., Cantero D., Webb C. Polygalacturonase production by Aspergillus awamori on wheat in solid-state fermentation. Appl. Microbiol. Biotechnol. 2002, 58:164-169.
17. Blot N., Berrier C., Hugouvieuxcotte-pattat N., Ghazi A., Condemine G. The oligogalacturonate-specific porin KdgM of Erwinia chrysanthemi belongs to a new porin family. J. Biol. Chem. 2002, 277:7936-7944.
18. Bonnin E., Le Goff A., van Alebeek G.J.W.M., Voragen A.G.J., Thibault J.F. Mode of action of Fusarium maniliforma endopolygalacturonases towards acetylated pectin. Carbohydr Polym. 2003, 52:381-388.
19. Boudart G., Lafitte C., Barthe J.P. Differential elicitation of defense responses by pectic fragments in bean seedlings. Planta 1998, 206:86-94.
20. Caffall K.H., Mohnen D. The structure, function, and biosynthesis of plant cell wall pectic polysaccharides. Carbohydr. Res. 2009, 344:1879-1900.
21. Carr J.G. Tea, coffee and cocoa. Microbiology of Fermented Foods 1985, 2:133-154. Elsevier.
22. Carroll S.B., Grenier J.K., Weatherbee S.D. From DNA to diversity. Molecular Genetics and the Evolution of Animal Design 2005, Blackwell Scientific, Malden. second ed.
23. Chauhan S., Sharma A.K. Enzyme treatment in improving the quality of pseudo stem fiber of banana plant to use this bioresource for making handmade paper. Indian J. Fiber Text. Res. 2014, 4:57-61.
24. Collmer A., Reid J.L., Mount M.S. Assay methods for pectic enzymes. Methods Enzymol. 1988, 161:329-335.
25. Combo A.M.M., Aguedo M., Goffin D., Wathelet B., Paquot M. Enzymatic production of pectic oligosachharides from polygalacturonic acid with commercial pectinase preparations. Food Bioprod. Process. 2012, 90:588-596.
26. Coutinho P.M., Stam M., Blanc E., Henrissat B. Why are there so many carbohydrate-active enzyme-related genes in plants?. Trends Plant Sci. 2003, 8:563-565.
27. Dalvi P., Anthappan P., Darade N., Kanoongo N., Adivarekar R. Amylase and pectinase from single source for simultaneous desizing and scouring. Indian J. Fiber Text. Res. 2007, 32:459-465.
28. Das A., Bhattacharya S., Reddy N.V., Sundara R.S. Improved production and purification of pectinase from Streptomyces sp. GHBA10 isolated from Valapattanam mangrove habitat, Kerala, India. Int. Res. J. Biol. Sci. 2013, 2:16-222.
29. Doco T., Williams P., Vidal S., Pellerin P. Rhamnogalacturonan-II, a pectic polysaccharide in the cell walls of growing plant cells form a dimer that is covalently cross-linked by a borate ester. In vitro conditions for the formation of dimer. Carbohydr. Res. 1997, 297:181.
30. Durairajan B., Sankari P.S. Optimization of solid state fermentation conditions for the production of pectinases by Aspergillus niger. J. Pharm. Biosci. 2014, 2:50-57.
31. Foulk J.A. Pectinolytic enzymes and retting. BioResources 2008, 3:155-169.
32. Freixo M.D., Karmali A., Arteiro J.M. Production of polygalacturonase from Coriolus versicolor grown on tomato pomace and its chromatographic behaviour on immobilized metal chelates. J. Ind. Microbiol. Biotechnol. 2008, 35:475-484.
33. Gainvors A., Karam N., Lequart C., Belarbi A. Use of Saccharomyces cerevisiae for the clarification of fruit juices. Biotechnol. Lett. 1994, 18:1329-1334.
34. Giacobbe S., Pepe S., Ventorino V., Birolo L., Vinciguerria R., Faraco V. Identification and characterisation of a pectinolytic enzyme from Paenibacilus xylanolyticus. BioResources 2014, 9:4873-4887.
35. Gummadi S.N., Panda T. Purification and biochemical properties of microbial pectinases: a review. Process Biochem. 2002, 38:987-996.
36. Gupta S. Production and recovery of an alkaline exopolygalacturonase from Bacillus subtilis RCK under solid-state fermentation using statistical approach. Bioresour. Technol. 2007, 99:937-945.
37. Gurucharanam K., Deshpande K.S. Polysaccharases of Curvularia lunata use in degumming of ramie fibers. Indian Phytopathol. 1986, 3:385-389.
38. Hebeish A., Ramadan M.A., Hashem M., Sadek B., Hady M.A. New development for combined bioscouring and bleaching of cotton-based fabrics. Res. J. Text. Appar. 2013, 17:94-103.
39. Herron, S.R., Benen, J.A.E., Scavetta, R.D., Visser, J., Jurnak, F., 2000. Structure and function of pectic enzymes: virulence factors of plant pathogens. National Academy of Sciences colloquium "Virulence and Defense in Host-Pathogen Interactions: Common Features Between Plants and Animals," held December 9-11, 1999, at the Arnold and Mabel Beckman Center in Irvine, CA, 97, pp. 8762-8769.
40. Hiteshi K., Chauhan S., Gupta R. Immobilization of microbial petinases: a review. CIBTech J. Biotechnol. 2013, 2:37-52.
41. Hoondal G.S., Tiwari R.P., Tewari R., Dahiya N., Beg Q.K. Microbial alkaline pectinases and their applications: a review. Appl. Microbiol. Biotechnol. 2002, 59:409-418.
42. Horikoshi K. Enzymes from alkalophiles. Microbial Enzymes and Biotechnology 1990, 275-295. Elsevier, Ireland. second ed. W.M. Fogarty, C.T. Kelly (Eds.).
43. Hugouvieux-Cotte-Pattat N., Blot N., Reverchon S. Identification of TogMNAB, an ABC transporter which mediates the uptake of pectic oligomers in Erwinia chrysanthemi 3937. Mol. Microbiol. 2001, 41:1113-1123.
44. Hugouvieux-Cotte-Pattat N., Condemine G., Nasser W., Reverchon S. Regulation of pectinolysis in Erwinia chrysanthemi. Annu. Rev. Microbiol. 1996, 50:213-257.
45. Islam S., Feroza B., Alam A.K.M.R., Begum S. Pectinase production by Aspergillus niger isolated from decomposed apple skin. Bangladesh J. Sci. Ind. Res. 2013, 48:25-32.
46. Jayani R.S., Shukla S.K., Gupta R. Screening of bacterial strains for polygalacturonase activity: its production by Bacillus sphaericus (MTCC 7542). Enzyme Res. 2010, 10.4061/2010/306785.
47. Jayani R.S., Saxena S., Gupta R. Microbial pectinolytic enzymes: a review. Process Biochem. 2005, 40:2931-2944.
48. Jenkins J., Pickersgill R. The architecture of parallel beta-helices and related folds. Prog. Biophys. Mol. Biol. 2001, 77:111-175.
49. Jenkins J., Mayans O., Pickersgill R. Structure and evolution of parallel beta-helix proteins. J. Struct. Biol. 1998, 122:236-246.
50. Kapoor M., Beg Q.K., Bhushan B., Singh K., Dadhich K.S., Hoondal G.S. Application of an alkaline and thermostablepolygalacturonase from Bacillus sp. MG-cp-2 in degumming of ramie (Boehmerianivea) and sunn hemp (Crotalaria juncea) bastfibers. Process Biochem. 2001, 36:803-807.
51. Kashyap D.R., Soni S.K., Tewari R. Enhanced production of pectinase by Bacillus sp. DT7 using solid state fermentation. Bioresour. Technol. 2003, 88:51-254.
52. Kashyap D.R., Vohra P., Soni S.K., Tewari R. Degumming of buel (Grewiaoptiva) bastfibers by pectinolytic enzyme from Bacillus sp. DT7. Biotechnol. Lett. 2001, 23:1297-1301.
53. Kasuo M., Ai O., Akio T., Kouzou H., Makiko O., Toshikatsu O. Low molecular weight pectateslyase from Streptomyces thermocarboxylus. J. Appl. Glycosci. 2004, 51:1-7.
54. Kertesz, Z., 1930. A new method for enzymic clarification of unfermented apple juice, US Patent No. 1.932.833, New York State Agricultural Experimentation Station (Geneva) Bill. No. 689.
55. Klug-Santner B.G., Schnitzhofer W., Vrsanska M., Weber J., Agarwal P.B., Nierstrasz V.A., Guebitz G.M. Purification and characterization of a new bioscouringpectatelyase from Bacillus pumilus BK2. J. Biotechnol. 2006, 121:390-401.
56. Kumar A., Sharma R. Production of alkaline pectinase by bacteria (cocci sps.) isolated from decomposing fruit materials. J. Phytol. 2012, 4:1-5.
57. Ladjama A., Taibi Z., Meddour A. Production of pectinolytic enzymes using Streptomyces strains isolated from palm grove soil in Biskra area (Algeria). Afr. Crop Sci. Proc. 2007, 8:1155-1158.
58. Lee M., Macmillan J.D. Mode of action of pectic enzymes I. Purification and certain properties of tomato pectinesterase. Biochemistry 1968, 7:4005-4010.
59. Li Z., Bai Z., Zhang B., Li B., Jin B., Zhang M., Lin F., Zhang H. Purification and characterization of alkaline pectin lyase from a newly isolated Bacillus clausii and its application in elicitation of plant disease resistance. Appl. Biochem. Biotechnol. 2012, 167:2241-2256.
60. Lingxia S., Steven N. Analysis of promoter activity of members of the pectatelyase like (PLL) gene family in cell separation in Arabidopsis. Plant Biol. 2010, 10:152.
61. Maheshwari, M., 2003. Microbial production of pectinases from coffee pulp waste. Paper Presented at 44th Annual Conference of Association of Microbiologists of India, Dharwad, India, 12-14 November.
62. Maldonado M.C., Saad A.M. Production of pectinesterase and polygalacturonase by Aspergillus niger in submerged and solid state systems. J. Ind. Microbiol. Biotechnol. 1998, 20:34-38.
63. Mareck A., Lamour R., Schaumann A., Chan P., Driouich A., Pelloux J., Lerouge P. Analysis of LuPME3, a pectin methylesterase from Linum usitatissimum, revealed a variability in PME proteolytic maturation. Plant Signal. Behav. 2012, 7:1-3.
64. Marimuthu S., Senthilkumar R.S., Balasubramanian S., Rajkumar R., Christie S.A. Effect of addition of biopectinaseon biochemical composition of CTC black tea. Recent Advances in Plantation Crops Research 2000, 265-269.
65. Martins E.S., SilvaD., Silva D.R., Gomes E. Solid state production of thermostable pectinases from thermophilic thermoascus aurantiacus. Process Biochem. 2002, 37:949-954.
66. Miller G.H. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 1959, 31:426-429.
67. Mojsov, K., 2012. Biotechnological applications of pectinases in textile processing and bioscouring of cotton fibers. In: Proceedings of the II International Conference Industrial Engineering and Environmental Protection, Zrenjanin, Serbia.
68. Nelson N. Photometric adaptation of the Somogyi method for determination of glucose. J. Biol. Chem. 1944, 153:375-380.
69. Norman C., Vidal S., Palva E.T. Oligogalacturonide-mediated induction of a gene involved in jasmonic acid synthesis in response to the cell-wall-degrading enzymes of the plant pathogen Erwinia carotovora. Mol. Plant Microbe Interact. 1999, 2:640-644.
70. Palanivelu P. Polygalacturonases: active site analysis and mechanism of action. Indian J. Biotechnol. 2006, 5:144-162.
71. Pasha K.M., Anuradha P., Subbarao D. Applications of pectinases in industrial sector. Int. J. Pure Appl. Sci. Technol. 2013, 16:89-95.
72. Patil S.R., Dayanand A. Production of pectinase from deseeded sunflower head by Aspergillus niger in submerged and solid-state conditions. Bioresour. Technol. 2006, 97:2054-2058.
73. Pedrolli D.B., Monteiro A.C., Gomes E., Carmona E.C. Pectin and pectinases: production, characterization and industrial application of microbial pectinolytic enzymes. Open Biotechnol. J. 2009, 3:9-18.
74. Pellinen T., Ahlfors H., Blot N., Condemine G. Topology of the Erwinia chrysanthemi oligogalacturonate porin KdgM. Biochem. J. 2003, 372:329-334.
75. Peraza L., Ortiz M.A., Peberdy J.F., Aguillar G. Growth and pectinase production by Aspergillus Mexican strain protoplast regenerated under acidic stress. Appl. Biochem. Biotechnol. 2003, 111:15-27.
76. Phugare S.S., Kalyani D.C., Patil A.V., Jadhav J.P. Textile dye degradation by bacterial consortium and subsequent toxicological analysis of dye and dye metabolites using cytotoxicity, genotoxicity and oxidative stress studies. J. Hazard. Mater. 2011, 186:713-723.
77. Pilnik W., Voragen A.G.J. Pectic enzymes in fruit and vegetable juice manufacture. Enzymes in Food Processing 2012, 363-392. Academic Press Limited, London.
78. Pires T.D.C.R., Filho F.F. Extraction and assay of pectic enzymes from Peruvian carrot (Arracacia xanthorriza Bancroft). Food Chem. 2005, 89:85-92.
79. Pitt O. Pectic lyase from Rhomamedicabinis var. pinodella. Methods Enzymol. 1988, 161:350-365.
80. Prathyusha K., Suneetha V. Bacterial pectinases and their potent biotechnological application in fruit processing juice production industry: a review. J. Phytol. 2011, 3:16-19.
81. Pretel M.T., Lozano P., Riquelme F., Romojaro F. Pectic enzymes in fresh fruit processing: optimization of enzymic peeling of oranges. Process Biochem. 1997, 32:43-49.
82. Qureshi A.S., Bhutto M.A., Chisti Y., Khushk I., Dahot M.U., Bano S. Production of pectinase by Bacillus subtilis EFRL 01 in a date syrup medium. Afr. J. Biotechnol. 2012, 11:12563-12570.
83. Rashmi R., Murthy K.R.S., Sneha G., Shabana S., Syama A., Radhika V.S. Partial purification and biochemical characterization of extracellular pectinase from Aspergillus niger isolated from groundnut seeds. J. Appl. Sci. 2008, 9:378-384.
84. Reid I., Ricard M. Pectinase in paper making: solving retention problems in mechanical pulps bleached with hydrogen peroxide. Enzyme Microb. Technol. 2000, 26:115-123.
85. Rodionov D.A., Gelfand M.S., Hugouvieux-Cotte-Pattat N. Comparative genomics of the KdgR regulon Erwinia chrysanthemi 3937 and other gamma-proteobacteria. Microbiology 2004, 150:3571-3590.
86. Roosdiana A., Prasetyawan S., Mahdi C., Sutrisno Production and characterization of Bacillus firmus pectinase. J. Pure Appl. Chem. Res. 2013, 2:35-41.
87. Rouse A.H., Atkins C.D. Bull. Univ. Florida 1955, 570:1-19.
88. Sabajanes M.M., Yanez R., Alonso J.L., Parajo J.C. Pectic oligosaccharides production from orange peel waste by enzymatic hydrolysis. Int. J. Food Sci. Technol. 2012, 47:747-754.
89. Said S., Fonseca M.J.V., Siessere V. Pectinase production by Penicillium frequentans. World J. Microbiol. Biotechnol. 1991, 7:607-608.
90. Sandri I.G., Fontana R.C., Barfknecht, Silveira M.M.D. Clarification of fruit juices by fungal pectinases. Food Sci. Technol. 2012, 44:2217-2222.
91. Saranraj P., Naidu M.A. Microbial pectinases: a review. Global J. Tradit. Med. Syst. 2014, 3:1-9.
92. Sato M., Kaji A. Exopolygalacturonaselyase produced by Streptomyces massasporeus. Agric. Biol. Chem. 1980, 44:717-721.
93. Scott D. Enzymes, industrial. Kirk-Othmer Encyclopedia of Chemical Technology 1978, 173-224. Wiley, New York. M. Grayson, D. Ekorth (Eds.).
94. Siddiqui M.A., Pande V., Arif M. Polygalacturonase production from Rhizomucor pusillus isolated from fruit markets of Uttar Pradesh. Afr. J. Microbiol. Res. 2013, 7:252-259.
95. Starr M.P., Nasumo S. Proteolytic activity of phytopathogenic xanthomonads. J. Gen. Microbiol. 1967, 46:425-433.
96. Tanabe H., Yoshihara Y., Tamura K., Kobayashi Y., Akamatsu T. Pretreatment of pectic wastewater from orange canning process by an alkalophilic Bacillus sp. J. Ferment. Technol. 1987, 65:243-246.
97. Tapre A.R., Jain R.K. Pectinases: enzymes for fruit processing industry. Int. Food Res. J. 2014, 21:447-453.
98. Tariq A., Latif Z. Isolation and biochemical characterization of bacterial isolates producing different levels of polygalacturonases from various sources. Afr. J. Microbiol. Res. 2012, 6:7259-7264.
99. Vigneswaran C., Anbumani N., Ananthasubramanian M., Rajendra R. Prediction and process optimization of pectinolytic reaction on organic cotton fabrics for bioscouring with alkaline pectinase. Indian J. Fibre Text. Res. 2012, 37:183-190.
100. Viikari L., Tenkanen M., Suurnakki A. Biotechnology in the pulp and paper industry. Biotechnology 2012, vol. 10:523-546. VCH-Wiley. second ed.
101. Villena M.A., Fernnndez M., Lopez J., Briones A. Pectinases yeast production using grape skin as carbon source. Adv. Biosci. Biotechnol. 2011, 2:89-96.
102. Vincken J.P., Schols H.A., Oomen R.J.F.J. If homogalacturonan were a side chain of rhamnogalacturonan I: implications for cell wall architecture. Plant Physiol. 2003, 132:1781-1789.
103. Visser J., Bussink H.J., Witteveen C. Gene expression in filamentous fungi. Gene Expression in Recombinant Microorganisms 2004, 241-308. Marcel Dekker Inc., New York. A. Smith (Ed.).
104. Willats W.G.T., Knox P., Mikkelsen J.D. Pectin: new insights into an old polymer are starting to gel. Trends Food Sci. Technol. 2006, 17:97-104.
105. Yadav S., Yadav P.K., Yadav D., Yadav K.D.S. Purification and characterization of pectin lyase producted by Aspergillus terricola suitable for retting of natural fibers. Appl. Biochem. Biotechnol. 2009, 159:270-283.
106. Yamamoto, R., Buschle-Diller, G., Takagishi, T., 2001. Eco-friendly processing of cotton: application to industrial manufacturing. In: Proceedings of the American Chemical Society National Meeting.
107. Yoder M.D., Jurnak F. The refined three-dimensional structure of pectatelyase C from Erwinia chrysanthemi at 2.2Å resolution (implications for an enzymatic mechanism). Plant Physiol. 1995, 107:349-364.
108. Zhang, C., Yao, J., Zhou, C., Mao, L., Zhang, G., Ma, Y., 2013. The alkaline pectate lyase PEL168 of Bacillus subtilis heterologously expressed in Pichia pastorisis more stable and efficient for degumming ramie fiber. BMC. Biotechnol. 13, 26.