-
1
-
-
84928987900
-
HTSeq: A Python framework to work with high-throughput sequencing data
-
Anders S, Pyl PT, Huber W (2015) HTSeq: a Python framework to work with high-throughput sequencing data. Bioinformatics 31: 166–169
-
(2015)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
2
-
-
58149337567
-
Methylthioalkylmalate synthases: Genetics, ecology and evolution
-
Benderoth M, Pfalz M, Kroymann J (2009) Methylthioalkylmalate synthases: genetics, ecology and evolution. Phytochem Rev 8: 255–268
-
(2009)
Phytochem Rev
, vol.8
, pp. 255-268
-
-
Benderoth, M.1
Pfalz, M.2
Kroymann, J.3
-
3
-
-
0032791985
-
Identification of QTLs controlling acylsugar fatty acid composition in an intraspecific population of Lycopersicon pennellii (Corr.) D’Arcy
-
Blauth SL, Steffens JC, Churchill GA, Mutschler MA (1999) Identification of QTLs controlling acylsugar fatty acid composition in an intraspecific population of Lycopersicon pennellii (Corr.) D’Arcy. Theor Appl Genet 99: 373–381
-
(1999)
Theor Appl Genet
, vol.99
, pp. 373-381
-
-
Blauth, S.L.1
Steffens, J.C.2
Churchill, G.A.3
Mutschler, M.A.4
-
4
-
-
0029257236
-
Purification and cDNA cloning of anthranilate synthase from Ruta graveolens:Modes of expression and properties of native and recombinant enzymes
-
Bohlmann J, DeLuca V, Eilert U, Martin W (1995) Purification and cDNA cloning of anthranilate synthase from Ruta graveolens:modes of expression and properties of native and recombinant enzymes. Plant J 7: 491–501
-
(1995)
Plant J
, vol.7
, pp. 491-501
-
-
Bohlmann, J.1
Deluca, V.2
Eilert, U.3
Martin, W.4
-
5
-
-
0030160410
-
Anthranilate synthase from Ruta graveolens: Duplicated AS alpha genes encode tryptophan-sensitive and tryptophan-insensitive isoenzymes specific to amino acid and alkaloid biosynthesis
-
Bohlmann J, Lins T, Martin W, Eilert U (1996) Anthranilate synthase from Ruta graveolens: duplicated AS alpha genes encode tryptophan-sensitive and tryptophan-insensitive isoenzymes specific to amino acid and alkaloid biosynthesis. Plant Physiol 111: 507–514
-
(1996)
Plant Physiol
, vol.111
, pp. 507-514
-
-
Bohlmann, J.1
Lins, T.2
Martin, W.3
Eilert, U.4
-
6
-
-
84922395331
-
The genome of the stresstolerant wild tomato species Solanum pennellii
-
Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, et al (2014a) The genome of the stresstolerant wild tomato species Solanum pennellii. Nat Genet 46: 1034–1038
-
(2014)
Nat Genet
, vol.46
, pp. 1034-1038
-
-
Bolger, A.1
Scossa, F.2
Bolger, M.E.3
Lanz, C.4
Maumus, F.5
Tohge, T.6
Quesneville, H.7
Alseekh, S.8
Sørensen, I.9
Lichtenstein, G.10
-
7
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B (2014b) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114–2120
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
8
-
-
84866976764
-
A draft genome sequence of Nicotiana benthamiana to enhance molecular plantmicrobe biology research
-
Bombarely A, Rosli HG, Vrebalov J, Moffett P, Mueller LA, Martin GB (2012) A draft genome sequence of Nicotiana benthamiana to enhance molecular plantmicrobe biology research. Mol Plant Microbe Interact 25: 1523–1530
-
(2012)
Mol Plant Microbe Interact
, vol.25
, pp. 1523-1530
-
-
Bombarely, A.1
Rosli, H.G.2
Vrebalov, J.3
Moffett, P.4
Mueller, L.A.5
Martin, G.B.6
-
9
-
-
0000757915
-
Polar epicuticular lipids of Lycopersicon pennellii
-
Burke BA, Goldsby G, Mudd JB (1987) Polar epicuticular lipids of Lycopersicon pennellii. Phytochemistry 26: 2567–2571
-
(1987)
Phytochemistry
, vol.26
, pp. 2567-2571
-
-
Burke, B.A.1
Goldsby, G.2
Mudd, J.B.3
-
10
-
-
84883165895
-
A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines
-
Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, et al (2013) A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. Plant Cell 25: 2465–2481
-
(2013)
Plant Cell
, vol.25
, pp. 2465-2481
-
-
Chitwood, D.H.1
Kumar, R.2
Headland, L.R.3
Ranjan, A.4
Covington, M.F.5
Ichihashi, Y.6
Fulop, D.7
Jiménez-Gómez, J.M.8
Peng, J.9
Maloof, J.N.10
-
11
-
-
0001466929
-
Characterization of insecticidal sugar esters of Petunia
-
Chortyk OT, Kays SJ, Teng Q (1997) Characterization of insecticidal sugar esters of Petunia. J Agric Food Chem 45: 270–275
-
(1997)
J Agric Food Chem
, vol.45
, pp. 270-275
-
-
Chortyk, O.T.1
Kays, S.J.2
Teng, Q.3
-
12
-
-
84872685434
-
Transcriptome analysis of bitter acid biosynthesis and precursor pathways in hop (Humulus lupulus)
-
Clark SM, Vaitheeswaran V, Ambrose SJ, Purves RW, Page JE (2013) Transcriptome analysis of bitter acid biosynthesis and precursor pathways in hop (Humulus lupulus). BMC Plant Biol 13: 12
-
(2013)
BMC Plant Biol
, vol.13
, pp. 12
-
-
Clark, S.M.1
Vaitheeswaran, V.2
Ambrose, S.J.3
Purves, R.W.4
Page, J.E.5
-
13
-
-
22244449030
-
Slow-onset feedback inhibition: Inhibition of Mycobacterium tuberculosis alpha-isopropylmalate synthase by L-leucine
-
de Carvalho LPS, Argyrou A, Blanchard JS (2005) Slow-onset feedback inhibition: inhibition of Mycobacterium tuberculosis alpha-isopropylmalate synthase by L-leucine. J Am Chem Soc 127: 10004–10005
-
(2005)
J am Chem Soc
, vol.127
, pp. 10004-10005
-
-
De Carvalho, L.1
Argyrou, A.2
Blanchard, J.S.3
-
14
-
-
79952304238
-
From amino acid to glucosinolate biosynthesis: Protein sequence changes in the evolution of methylthioalkylmalate synthase in Arabidopsis
-
de Kraker JW, Gershenzon J (2011) From amino acid to glucosinolate biosynthesis: protein sequence changes in the evolution of methylthioalkylmalate synthase in Arabidopsis. Plant Cell 23: 38–53
-
(2011)
Plant Cell
, vol.23
, pp. 38-53
-
-
De Kraker, J.W.1
Gershenzon, J.2
-
15
-
-
34247189657
-
Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine
-
de Kraker JW, Luck K, Textor S, Tokuhisa JG, Gershenzon J (2007) Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine. Plant Physiol 143: 970–986
-
(2007)
Plant Physiol
, vol.143
, pp. 970-986
-
-
De Kraker, J.W.1
Luck, K.2
Textor, S.3
Tokuhisa, J.G.4
Gershenzon, J.5
-
16
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
17
-
-
0028846653
-
An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL
-
Eshed Y, Zamir D (1995) An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141: 1147–1162
-
(1995)
Genetics
, vol.141
, pp. 1147-1162
-
-
Eshed, Y.1
Zamir, D.2
-
18
-
-
0002678873
-
Epicuticular lipid accumulation on the leaves of Lycopersicon pennellii (Corr.) D’Arcy and Lycopersicon esculentum Mill
-
Fobes JF, Mudd JB, Marsden MP (1985) Epicuticular lipid accumulation on the leaves of Lycopersicon pennellii (Corr.) D’Arcy and Lycopersicon esculentum Mill. Plant Physiol 77: 567–570
-
(1985)
Plant Physiol
, vol.77
, pp. 567-570
-
-
Fobes, J.F.1
Mudd, J.B.2
Marsden, M.P.3
-
19
-
-
15444344334
-
Analysis of a chemical plant defense mechanism in grasses
-
Frey M, Chomet P, Glawischnig E, Stettner C, Grün S, Winklmair A, Eisenreich W, Bacher A, Meeley RB, Briggs SP, et al (1997) Analysis of a chemical plant defense mechanism in grasses. Science 277: 696–699
-
(1997)
Science
, vol.277
, pp. 696-699
-
-
Frey, M.1
Chomet, P.2
Glawischnig, E.3
Stettner, C.4
Grün, S.5
Winklmair, A.6
Eisenreich, W.7
Bacher, A.8
Meeley, R.B.9
Briggs, S.P.10
-
20
-
-
84898548053
-
Comparative structural profiling of trichome specialized metabolites in tomato (Solanum lycopersicum) and S. Habrochaites: Acylsugar profiles revealed by UHPLC/MS and NMR
-
Ghosh B, Westbrook TC, Jones AD (2014) Comparative structural profiling of trichome specialized metabolites in tomato (Solanum lycopersicum) and S. habrochaites: acylsugar profiles revealed by UHPLC/MS and NMR. Metabolomics 10: 496–507
-
(2014)
Metabolomics
, vol.10
, pp. 496-507
-
-
Ghosh, B.1
Westbrook, T.C.2
Jones, A.D.3
-
21
-
-
0034844992
-
Evolution of benzoxazinone biosynthesis and indole production in maize
-
Gierl A, Frey M (2001) Evolution of benzoxazinone biosynthesis and indole production in maize. Planta 213: 493–498
-
(2001)
Planta
, vol.213
, pp. 493-498
-
-
Gierl, A.1
Frey, M.2
-
22
-
-
84866080675
-
Evolution of TPS20-related terpene synthases influences chemical diversity in the glandular trichomes of the wild tomato relative Solanum habrochaites
-
Gonzales-Vigil E, Hufnagel DE, Kim J, Last RL, Barry CS (2012) Evolution of TPS20-related terpene synthases influences chemical diversity in the glandular trichomes of the wild tomato relative Solanum habrochaites. Plant J 71: 921–935
-
(2012)
Plant J
, vol.71
, pp. 921-935
-
-
Gonzales-Vigil, E.1
Hufnagel, D.E.2
Kim, J.3
Last, R.L.4
Barry, C.S.5
-
23
-
-
0038725902
-
Constructs and methods for highthroughput gene silencing in plants
-
Helliwell C, Waterhouse P (2003) Constructs and methods for highthroughput gene silencing in plants. Methods 30: 289–295
-
(2003)
Methods
, vol.30
, pp. 289-295
-
-
Helliwell, C.1
Waterhouse, P.2
-
24
-
-
2142682950
-
SEM observation and HPLC analysis of the accumulation of alpha-acids and beta-acids in the fresh developing hop (Humulus lupulus L) peltate glandular trichomes
-
Hirosawa T, Saito T, Tanaka T, Matsushima H (1995) SEM observation and HPLC analysis of the accumulation of alpha-acids and beta-acids in the fresh developing hop (Humulus lupulus L) peltate glandular trichomes. J Electron Microsc (Tokyo) 44: 145–147
-
(1995)
J Electron Microsc (Tokyo)
, vol.44
, pp. 145-147
-
-
Hirosawa, T.1
Saito, T.2
Tanaka, T.3
Matsushima, H.4
-
25
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
26
-
-
0028086842
-
Acylglucoses from wild tomatoes alter behavior and reduce growth and survival of Helicoverpa zea and Spodoptera exigua (Lepidoptera, Noctuidae)
-
Juvik JA, Shapiro JA, Young TE, Mutschler MA (1994) Acylglucoses from wild tomatoes alter behavior and reduce growth and survival of Helicoverpa zea and Spodoptera exigua (Lepidoptera, Noctuidae). J Econ Entomol 87: 482–492
-
(1994)
J Econ Entomol
, vol.87
, pp. 482-492
-
-
Juvik, J.A.1
Shapiro, J.A.2
Young, T.E.3
Mutschler, M.A.4
-
27
-
-
0025247969
-
Modified branched-chain amino acid pathways give rise to acyl acids of sucrose esters exuded from tobacco leaf trichomes
-
Kandra G, Severson R, Wagner GJ (1990) Modified branched-chain amino acid pathways give rise to acyl acids of sucrose esters exuded from tobacco leaf trichomes. Eur J Biochem 188: 385–391
-
(1990)
Eur J Biochem
, vol.188
, pp. 385-391
-
-
Kandra, G.1
Severson, R.2
Wagner, G.J.3
-
28
-
-
11944253110
-
Chlorsulfuron modifies biosynthesis of acyl acid substituents of sucrose esters secreted by tobacco trichomes
-
Kandra L, Wagner GJ (1990) Chlorsulfuron modifies biosynthesis of acyl acid substituents of sucrose esters secreted by tobacco trichomes. Plant Physiol 94: 906–912
-
(1990)
Plant Physiol
, vol.94
, pp. 906-912
-
-
Kandra, L.1
Wagner, G.J.2
-
29
-
-
37249087896
-
Recombinational cloning with plant Gateway vectors
-
Karimi M, Depicker A, Hilson P (2007) Recombinational cloning with plant Gateway vectors. Plant Physiol 145: 1144–1154
-
(2007)
Plant Physiol
, vol.145
, pp. 1144-1154
-
-
Karimi, M.1
Depicker, A.2
Hilson, P.3
-
30
-
-
33947263025
-
Biosynthesis of hyperforin and adhyperforin from amino acid precursors in shoot cultures of Hypericum perforatum
-
Karppinen K, Hokkanen J, Tolonen A, Mattila S, Hohtola A (2007) Biosynthesis of hyperforin and adhyperforin from amino acid precursors in shoot cultures of Hypericum perforatum. Phytochemistry 68: 1038–1045
-
(2007)
Phytochemistry
, vol.68
, pp. 1038-1045
-
-
Karppinen, K.1
Hokkanen, J.2
Tolonen, A.3
Mattila, S.4
Hohtola, A.5
-
31
-
-
84870823760
-
Striking natural diversity in glandular trichome acylsugar composition is shaped by variation at the Acyltransferase2 locus in the wild tomato Solanum habrochaites
-
Kim J, Kang K, Gonzales-Vigil E, Shi F, Jones AD, Barry CS, Last RL (2012) Striking natural diversity in glandular trichome acylsugar composition is shaped by variation at the Acyltransferase2 locus in the wild tomato Solanum habrochaites. Plant Physiol 160: 1854–1870
-
(2012)
Plant Physiol
, vol.160
, pp. 1854-1870
-
-
Kim, J.1
Kang, K.2
Gonzales-Vigil, E.3
Shi, F.4
Jones, A.D.5
Barry, C.S.6
Last, R.L.7
-
32
-
-
84907463269
-
Analysis of natural and induced variation in tomato glandular trichome flavonoids identifies a gene not present in the reference genome
-
Kim J, Matsuba Y, Ning J, Schilmiller AL, Hammar D, Jones AD, Pichersky E, Last RL (2014) Analysis of natural and induced variation in tomato glandular trichome flavonoids identifies a gene not present in the reference genome. Plant Cell 26: 3272–3285
-
(2014)
Plant Cell
, vol.26
, pp. 3272-3285
-
-
Kim, J.1
Matsuba, Y.2
Ning, J.3
Schilmiller, A.L.4
Hammar, D.5
Jones, A.D.6
Pichersky, E.7
Last, R.L.8
-
33
-
-
0001603472
-
Sucrose esters associated with glandular trichomes of wild Lycopersicon species
-
King RR, Calhoun LA, Singh RP, Boucher A (1990) Sucrose esters associated with glandular trichomes of wild Lycopersicon species. Phytochemistry 29: 2115–2118
-
(1990)
Phytochemistry
, vol.29
, pp. 2115-2118
-
-
King, R.R.1
Calhoun, L.A.2
Singh, R.P.3
Boucher, A.4
-
34
-
-
2942525314
-
Crystal structure of LeuA from Mycobacterium tuberculosis, a key enzyme in leucine biosynthesis
-
Koon N, Squire CJ, Baker EN (2004) Crystal structure of LeuA from Mycobacterium tuberculosis, a key enzyme in leucine biosynthesis. Proc Natl Acad Sci USA 101: 8295–8300
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8295-8300
-
-
Koon, N.1
Squire, C.J.2
Baker, E.N.3
-
35
-
-
0038271823
-
Different elongation pathways in the biosynthesis of acyl groups of trichome exudate sugar esters from various solanaceous plants
-
Kroumova AB, Wagner GJ (2003) Different elongation pathways in the biosynthesis of acyl groups of trichome exudate sugar esters from various solanaceous plants. Planta 216: 1013–1021
-
(2003)
Planta
, vol.216
, pp. 1013-1021
-
-
Kroumova, A.B.1
Wagner, G.J.2
-
36
-
-
84946224560
-
Pathways for synthesis, and possibilities for genetic modification of sugar ester acyl groups produced by trichomes of solanaceous species
-
Kroumova AB, Wagner GJ (2009) Pathways for synthesis, and possibilities for genetic modification of sugar ester acyl groups produced by trichomes of solanaceous species. Gen Appl Plant Physiol 35: 95–110
-
(2009)
Gen Appl Plant Physiol
, vol.35
, pp. 95-110
-
-
Kroumova, A.B.1
Wagner, G.J.2
-
38
-
-
0035204571
-
A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway
-
Kroymann J, Textor S, Tokuhisa JG, Falk KL, Bartram S, Gershenzon J, Mitchell-Olds T (2001) A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway. Plant Physiol 127: 1077–1088
-
(2001)
Plant Physiol
, vol.127
, pp. 1077-1088
-
-
Kroymann, J.1
Textor, S.2
Tokuhisa, J.G.3
Falk, K.L.4
Bartram, S.5
Gershenzon, J.6
Mitchell-Olds, T.7
-
39
-
-
84869502463
-
Quantitative trait loci increasing acylsugars in tomato breeding lines and their impacts on silverleaf whiteflies
-
Leckie BM, De Jong DM, Mutschler MA (2012) Quantitative trait loci increasing acylsugars in tomato breeding lines and their impacts on silverleaf whiteflies. Mol Breed 30: 1621–1634
-
(2012)
Mol Breed
, vol.30
, pp. 1621-1634
-
-
Leckie, B.M.1
De Jong, D.M.2
Mutschler, M.A.3
-
40
-
-
84939880945
-
Quantitative trait loci regulating the fatty acid profile of acylsugars in tomato
-
Leckie BM, Halitschke R, De Jong DM, Smeda JR, Kessler A, Mutschler MA (2014) Quantitative trait loci regulating the fatty acid profile of acylsugars in tomato. Mol Breed 34: 1201–1213
-
(2014)
Mol Breed
, vol.34
, pp. 1201-1213
-
-
Leckie, B.M.1
Halitschke, R.2
De Jong, D.M.3
Smeda, J.R.4
Kessler, A.5
Mutschler, M.A.6
-
41
-
-
77749283753
-
KnappM(2010) Broad-spectrum arthropod resistance in hybrids between high- and low-acylsugar tomato lines
-
Maluf WR, Maciel GM, Gomes LAA, Cardoso MD, Goncalves LD, da Silva EC, KnappM(2010) Broad-spectrum arthropod resistance in hybrids between high- and low-acylsugar tomato lines. Crop Sci 50: 439–450
-
Crop Sci
, vol.50
, pp. 439-450
-
-
Maluf, W.R.1
Maciel, G.M.2
Gomes, L.3
Cardoso, M.D.4
Goncalves, L.D.5
Da Silva, E.C.6
-
42
-
-
0001869253
-
Transformation of tomato with Agrobacterium tumefaciens
-
McCormick S (1991) Transformation of tomato with Agrobacterium tumefaciens. Plant Tissue Culture Manual B6: 1–9
-
(1991)
Plant Tissue Culture Manual
, vol.B6
, pp. 1-9
-
-
McCormick, S.1
-
43
-
-
78651060921
-
Comparative functional genomic analysis of Solanum glandular trichome types
-
McDowell ET, Kapteyn J, Schmidt A, Li C, Kang JH, Descour A, Shi F, Larson M, Schilmiller A, An L, et al (2011) Comparative functional genomic analysis of Solanum glandular trichome types. Plant Physiol 155: 524–539
-
(2011)
Plant Physiol
, vol.155
, pp. 524-539
-
-
McDowell, E.T.1
Kapteyn, J.2
Schmidt, A.3
Li, C.4
Kang, J.H.5
Descour, A.6
Shi, F.7
Larson, M.8
Schilmiller, A.9
An, L.10
-
44
-
-
0030667041
-
A deletion in an indole synthase gene is responsible for the DIMBOA-deficient phenotype of bxbx maize
-
Melanson D, Chilton MD, Masters-Moore D, Chilton WS (1997) A deletion in an indole synthase gene is responsible for the DIMBOA-deficient phenotype of bxbx maize. Proc Natl Acad Sci USA 94: 13345–13350
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 13345-13350
-
-
Melanson, D.1
Chilton, M.D.2
Masters-Moore, D.3
Chilton, W.S.4
-
45
-
-
84862976462
-
Achieving diversity in the face of constraints: Lessons from metabolism
-
Milo R, Last RL (2012) Achieving diversity in the face of constraints: lessons from metabolism. Science 336: 1663–1667
-
(2012)
Science
, vol.336
, pp. 1663-1667
-
-
Milo, R.1
Last, R.L.2
-
46
-
-
84880551572
-
Introduction to the different classes of biosynthetic enzymes
-
AE Osbourn, V Lanzotti, Springer, New York
-
Modolo LV, Reichert AI, Dixon RA (2009) Introduction to the different classes of biosynthetic enzymes. In AE Osbourn, V Lanzotti, eds, Plant- Derived Natural Products: Synthesis, Function, and Application. Springer, New York, pp 143–163
-
(2009)
Plant- Derived Natural Products: Synthesis, Function, and Application
, pp. 143-163
-
-
Modolo, L.V.1
Reichert, A.I.2
Dixon, R.A.3
-
47
-
-
84946231603
-
Something old, something new: Conserved enzymes and the evolution of novelty in plant specialized metabolism
-
Moghe GD, Last RL (2015) Something old, something new: conserved enzymes and the evolution of novelty in plant specialized metabolism. Plant Physiol 169: 1512–1523
-
(2015)
Plant Physiol
, vol.169
, pp. 1512-1523
-
-
Moghe, G.D.1
Last, R.L.2
-
48
-
-
27244454556
-
The SOL Genomics Network: A comparative resource for Solanaceae biology and beyond
-
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, et al (2005) The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond. Plant Physiol 138: 1310–1317
-
(2005)
Plant Physiol
, vol.138
, pp. 1310-1317
-
-
Mueller, L.A.1
Solow, T.H.2
Taylor, N.3
Skwarecki, B.4
Buels, R.5
Binns, J.6
Lin, C.7
Wright, M.H.8
Ahrens, R.9
Wang, Y.10
-
49
-
-
0037014302
-
Biosynthesis of strawberry aroma compounds through amino acidmetabolism
-
Pérez AG, Olías R, Luaces P, Sanz C (2002) Biosynthesis of strawberry aroma compounds through amino acidmetabolism. J Agric Food Chem 50: 4037–4042
-
(2002)
J Agric Food Chem
, vol.50
, pp. 4037-4042
-
-
Pérez, A.G.1
Olías, R.2
Luaces, P.3
Sanz, C.4
-
50
-
-
0242574902
-
Structure-function relationships affecting the insecticidal and miticidal activity of sugar esters
-
Puterka GJ, Farone W, Palmer T, Barrington A (2003) Structure-function relationships affecting the insecticidal and miticidal activity of sugar esters. J Econ Entomol 96: 636–644
-
(2003)
J Econ Entomol
, vol.96
, pp. 636-644
-
-
Puterka, G.J.1
Farone, W.2
Palmer, T.3
Barrington, A.4
-
51
-
-
0001037215
-
Evolution of mating systems in Lycopersicon hirsutum as deduced from genetic variation in electrophoretic and morphological characters
-
Rick CM, Fobes JF, Tanksley SD (1979) Evolution of mating systems in Lycopersicon hirsutum as deduced from genetic variation in electrophoretic and morphological characters. Plant Syst Evol 132: 279–298
-
(1979)
Plant Syst Evol
, vol.132
, pp. 279-298
-
-
Rick, C.M.1
Fobes, J.F.2
Tanksley, S.D.3
-
52
-
-
0003136233
-
Genetic variation in Solanum pennellii: Comparisons with two other sympatric tomato species
-
Rick CM, Tanksley SD (1981) Genetic variation in Solanum pennellii: comparisons with two other sympatric tomato species. Plant Syst Evol 139: 11–45
-
(1981)
Plant Syst Evol
, vol.139
, pp. 11-45
-
-
Rick, C.M.1
Tanksley, S.D.2
-
53
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139–140
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
54
-
-
0001878735
-
Acylsugars of Lycopersicon pennellii deter settling and feeding of the green peach aphid (Homoptera, Aphididae)
-
Rodriguez AE, Tingey WM, Mutschler MA (1993) Acylsugars of Lycopersicon pennellii deter settling and feeding of the green peach aphid (Homoptera, Aphididae). J Econ Entomol 86: 34–39
-
(1993)
J Econ Entomol
, vol.86
, pp. 34-39
-
-
Rodriguez, A.E.1
Tingey, W.M.2
Mutschler, M.A.3
-
55
-
-
0019323618
-
A-Isopropylmalate synthase from yeast: A zinc metalloenzyme
-
Roeder PR, Kohlhaw GB (1980) a-Isopropylmalate synthase from yeast: a zinc metalloenzyme. Biochim Biophys Acta 613: 482–487
-
(1980)
Biochim Biophys Acta
, vol.613
, pp. 482-487
-
-
Roeder, P.R.1
Kohlhaw, G.B.2
-
56
-
-
62549120342
-
A novel pathway for sesquiterpene biosynthesis from Z,Z-farnesyl pyrophosphate in the wild tomato Solanum habrochaites
-
Sallaud C, Rontein D, Onillon S, Jabès F, Duffé P, Giacalone C, Thoraval S, Escoffier C, Herbette G, Leonhardt N, et al (2009) A novel pathway for sesquiterpene biosynthesis from Z,Z-farnesyl pyrophosphate in the wild tomato Solanum habrochaites. Plant Cell 21: 301–317
-
(2009)
Plant Cell
, vol.21
, pp. 301-317
-
-
Sallaud, C.1
Rontein, D.2
Onillon, S.3
Jabès, F.4
Duffé, P.5
Giacalone, C.6
Thoraval, S.7
Escoffier, C.8
Herbette, G.9
Leonhardt, N.10
-
57
-
-
77950928397
-
Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines
-
Schilmiller A, Shi F, Kim J, Charbonneau AL, Holmes D, Jones AD, Last RL (2010) Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines. Plant J 62: 391–403
-
(2010)
Plant J
, vol.62
, pp. 391-403
-
-
Schilmiller, A.1
Shi, F.2
Kim, J.3
Charbonneau, A.L.4
Holmes, D.5
Jones, A.D.6
Last, R.L.7
-
58
-
-
84867047345
-
Identification of a BAHD acetyltransferase that produces protective acyl sugars in tomato trichomes
-
Schilmiller AL, Charbonneau AL, Last RL (2012) Identification of a BAHD acetyltransferase that produces protective acyl sugars in tomato trichomes. Proc Natl Acad Sci USA 109: 16377–16382
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 16377-16382
-
-
Schilmiller, A.L.1
Charbonneau, A.L.2
Last, R.L.3
-
59
-
-
84928954851
-
Functionally divergent alleles and duplicated loci encoding an acyltransferase contribute to acylsugar metabolite diversity in Solanum trichomes
-
Schilmiller AL, Moghe GD, Fan P, Ghosh B, Ning J, Jones AD, Last RL (2015) Functionally divergent alleles and duplicated loci encoding an acyltransferase contribute to acylsugar metabolite diversity in Solanum trichomes. Plant Cell 27: 1002–1017
-
(2015)
Plant Cell
, vol.27
, pp. 1002-1017
-
-
Schilmiller, A.L.1
Moghe, G.D.2
Fan, P.3
Ghosh, B.4
Ning, J.5
Jones, A.D.6
Last, R.L.7
-
60
-
-
67649795059
-
Monoterpenes in the glandular trichomes of tomato are synthesized from a neryl diphosphate precursor rather than geranyl diphosphate
-
Schilmiller AL, Schauvinhold I, Larson M, Xu R, Charbonneau AL, Schmidt A, Wilkerson C, Last RL, Pichersky E (2009) Monoterpenes in the glandular trichomes of tomato are synthesized from a neryl diphosphate precursor rather than geranyl diphosphate. Proc Natl Acad Sci USA 106: 10865–10870
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 10865-10870
-
-
Schilmiller, A.L.1
Schauvinhold, I.2
Larson, M.3
Xu, R.4
Charbonneau, A.L.5
Schmidt, A.6
Wilkerson, C.7
Last, R.L.8
Pichersky, E.9
-
61
-
-
0000570152
-
Isolation and characterization of the sucrose esters of the cuticular waxes of green tobacco leaf
-
Severson RF, Arrendale RF, Chortyk OT, Green CR, Thome FA, Stewart JL, Johnson AW (1985) Isolation and characterization of the sucrose esters of the cuticular waxes of green tobacco leaf. J Agric Food Chem 33: 870–875
-
(1985)
J Agric Food Chem
, vol.33
, pp. 870-875
-
-
Severson, R.F.1
Arrendale, R.F.2
Chortyk, O.T.3
Green, C.R.4
Thome, F.A.5
Stewart, J.L.6
Johnson, A.W.7
-
62
-
-
0028011514
-
Acylsugars of the wild tomato Lycopersicon pennellii in relation to geographic-distribution of the species
-
Shapiro JA, Steffens JC, Mutschler MA (1994) Acylsugars of the wild tomato Lycopersicon pennellii in relation to geographic-distribution of the species. Biochem Syst Ecol 22: 545–561
-
(1994)
Biochem Syst Ecol
, vol.22
, pp. 545-561
-
-
Shapiro, J.A.1
Steffens, J.C.2
Mutschler, M.A.3
-
63
-
-
84863672047
-
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
-
Sim SC, Durstewitz G, Plieske J, Wieseke R, Ganal MW, Van Deynze A, Hamilton JP, Buell CR, Causse M, Wijeratne S, et al (2012) Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS ONE 7: e40563
-
(2012)
Plos ONE
, vol.7
, pp. e40563
-
-
Sim, S.C.1
Durstewitz, G.2
Plieske, J.3
Wieseke, R.4
Ganal, M.W.5
Van Deynze, A.6
Hamilton, J.P.7
Buell, C.R.8
Causse, M.9
Wijeratne, S.10
-
64
-
-
57749118726
-
Transcriptomic and reverse genetic analyses of branched-chain fatty acid and acyl sugar production in Solanum pennellii and Nicotiana benthamiana
-
Slocombe SP, Schauvinhold I, McQuinn RP, Besser K, Welsby NA, Harper A, Aziz N, Li Y, Larson TR, Giovannoni J, et al (2008) Transcriptomic and reverse genetic analyses of branched-chain fatty acid and acyl sugar production in Solanum pennellii and Nicotiana benthamiana. Plant Physiol 148: 1830–1846
-
(2008)
Plant Physiol
, vol.148
, pp. 1830-1846
-
-
Slocombe, S.P.1
Schauvinhold, I.2
McQuinn, R.P.3
Besser, K.4
Welsby, N.A.5
Harper, A.6
Aziz, N.7
Li, Y.8
Larson, T.R.9
Giovannoni, J.10
-
65
-
-
0017252851
-
Mechanism of feedback inhibition by leucine: Purification and properties of a feedback-resistant alpha-isopropylmalate synthase
-
Soper TS, Doellgast J, Kohlhaw GB (1976) Mechanism of feedback inhibition by leucine: purification and properties of a feedback-resistant alpha-isopropylmalate synthase. Arch Biochem Biophys 173: 362–374
-
(1976)
Arch Biochem Biophys
, vol.173
, pp. 362-374
-
-
Soper, T.S.1
Doellgast, J.2
Kohlhaw, G.B.3
-
66
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
67
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey JD (2002) A direct approach to false discovery rates. J R Stat Soc B 64: 479–498
-
(2002)
J R Stat Soc B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
68
-
-
1942487253
-
Biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana: Recombinant expression and characterization of methylthioalkylmalate synthase, the condensing enzyme of the chainelongation cycle
-
Textor S, Bartram S, Kroymann J, Falk KL, Hick A, Pickett JA, Gershenzon J (2004) Biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana: recombinant expression and characterization of methylthioalkylmalate synthase, the condensing enzyme of the chainelongation cycle. Planta 218: 1026–1035
-
(2004)
Planta
, vol.218
, pp. 1026-1035
-
-
Textor, S.1
Bartram, S.2
Kroymann, J.3
Falk, K.L.4
Hick, A.5
Pickett, J.A.6
Gershenzon, J.7
-
69
-
-
34250663450
-
MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis
-
Textor S, de Kraker JW, Hause B, Gershenzon J, Tokuhisa JG (2007) MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis. Plant Physiol 144: 60–71
-
(2007)
Plant Physiol
, vol.144
, pp. 60-71
-
-
Textor, S.1
De Kraker, J.W.2
Hause, B.3
Gershenzon, J.4
Tokuhisa, J.G.5
-
70
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome Consortium
-
Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635–641
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
71
-
-
0033763368
-
Biosynthesis and elongation of short- and medium-chain-length fatty acids
-
van der Hoeven RS, Steffens JC (2000) Biosynthesis and elongation of short- and medium-chain-length fatty acids. Plant Physiol 122: 275–282
-
(2000)
Plant Physiol
, vol.122
, pp. 275-282
-
-
Van Der Hoeven, R.S.1
Steffens, J.C.2
-
72
-
-
0000908083
-
Branched chain amino acid metabolism in the biosynthesis of Lycopersicon pennellii glucose esters
-
Walters DS, Steffens JC (1990) Branched chain amino acid metabolism in the biosynthesis of Lycopersicon pennellii glucose esters. Plant Physiol 93: 1544–1551
-
(1990)
Plant Physiol
, vol.93
, pp. 1544-1551
-
-
Walters, D.S.1
Steffens, J.C.2
-
73
-
-
57749091436
-
Terpene biosynthesis in glandular trichomes of hop
-
Wang G, Tian L, Aziz N, Broun P, Dai X, He J, King A, Zhao PX, Dixon RA (2008) Terpene biosynthesis in glandular trichomes of hop. Plant Physiol 148: 1254–1266
-
(2008)
Plant Physiol
, vol.148
, pp. 1254-1266
-
-
Wang, G.1
Tian, L.2
Aziz, N.3
Broun, P.4
Dai, X.5
He, J.6
King, A.7
Zhao, P.X.8
Dixon, R.A.9
-
74
-
-
84878280657
-
MCScanX-transposed: Detecting transposed gene duplications based on multiple colinearity scans
-
Wang Y, Li J, Paterson AH (2013) MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans. Bioinformatics 29: 1458–1460
-
(2013)
Bioinformatics
, vol.29
, pp. 1458-1460
-
-
Wang, Y.1
Li, J.2
Paterson, A.H.3
-
75
-
-
79956346754
-
Trichome-derived O-acyl sugars are a first meal for caterpillars that tags them for predation
-
Weinhold A, Baldwin IT (2011) Trichome-derived O-acyl sugars are a first meal for caterpillars that tags them for predation. Proc Natl Acad Sci USA 108: 7855–7859
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 7855-7859
-
-
Weinhold, A.1
Baldwin, I.T.2
-
76
-
-
0019822091
-
Alpha-isopropylmalate synthase as a marker for the leucine biosynthetic pathway in several Clostridia and in Bacteroides fragilis
-
Wiegel J (1981) Alpha-isopropylmalate synthase as a marker for the leucine biosynthetic pathway in several Clostridia and in Bacteroides fragilis. Arch Microbiol 130: 385–390
-
(1981)
Arch Microbiol
, vol.130
, pp. 385-390
-
-
Wiegel, J.1
-
77
-
-
84877630110
-
Branchedchain amino acid biosynthesis inhibitors: Herbicide efficacy is associated with an induced carbon-nitrogen imbalance
-
Zabalza A, Zulet A, Gil-Monreal M, Igal M, Royuela M (2013) Branchedchain amino acid biosynthesis inhibitors: herbicide efficacy is associated with an induced carbon-nitrogen imbalance. J Plant Physiol 170: 814–821
-
(2013)
J Plant Physiol
, vol.170
, pp. 814-821
-
-
Zabalza, A.1
Zulet, A.2
Gil-Monreal, M.3
Igal, M.4
Royuela, M.5
-
78
-
-
84907495537
-
Subdomain II of a-isopropylmalate synthase is essential for activity: Inferring a mechanism of feedback inhibition
-
Zhang Z, Wu J, Lin W, Wang J, Yan H, Zhao W, Ma J, Ding J, Zhang P, Zhao GP (2014) Subdomain II of a-isopropylmalate synthase is essential for activity: inferring a mechanism of feedback inhibition. J Biol Chem 289: 27966–27978
-
(2014)
J Biol Chem
, vol.289
, pp. 27966-27978
-
-
Zhang, Z.1
Wu, J.2
Lin, W.3
Wang, J.4
Yan, H.5
Zhao, W.6
Ma, J.7
Ding, J.8
Zhang, P.9
Zhao, G.P.10
|