메뉴 건너뛰기




Volumn 90, Issue 9, 2016, Pages 2215-2229

Inter-laboratory study of human in vitro toxicogenomics-based tests as alternative methods for evaluating chemical carcinogenicity: a bioinformatics perspective

(24)  Herwig, R a   Gmuender, H b   Corvi, R c   Bloch, K M d   Brandenburg, A b   Castell, J e   Ceelen, L f   Chesne, C g   Doktorova, T Y f   Jennen, D h   Jennings, P i   Limonciel, A i   Lock, E A d   McMorrow, T j   Phrakonkham, P c   Radford, R j   Slattery, C j   Stierum, R k   Vilardell, M a   Wittenberger, T b   more..


Author keywords

Bioinformatics; Carcinogenicity; In vitro assays; Inter laboratory assessment; Pre validation; Toxicogenomics

Indexed keywords

DIMETHYL SULFOXIDE; TRANSCRIPTOME; CARCINOGEN;

EID: 84946114411     PISSN: 03405761     EISSN: 14320738     Source Type: Journal    
DOI: 10.1007/s00204-015-1617-3     Document Type: Article
Times cited : (15)

References (38)
  • 4
    • 84891352904 scopus 로고    scopus 로고
    • Assessing compound carcinogenicity in vitro connectivity mapping
    • COI: 1:CAS:528:DC%2BC2cXksFek, PID: 23940306
    • Caiment F, Tsamou M, Jennen D, Kleinjans J (2014) Assessing compound carcinogenicity in vitro connectivity mapping. Carcinogenesis 35:201–207
    • (2014) Carcinogenesis , vol.35 , pp. 201-207
    • Caiment, F.1    Tsamou, M.2    Jennen, D.3    Kleinjans, J.4
  • 9
    • 33646344978 scopus 로고    scopus 로고
    • STEM: a tool for the analysis of short time series gene expression data
    • Ernst J, Bar-Joseph Z (2006) STEM: a tool for the analysis of short time series gene expression data. BMC Bioinform 7:191
    • (2006) BMC Bioinform , vol.7 , pp. 191
    • Ernst, J.1    Bar-Joseph, Z.2
  • 10
    • 79251586838 scopus 로고    scopus 로고
    • Cross-platform comparison of microarray-based multiple-class prediction
    • COI: 1:CAS:528:DC%2BC3MXhtFWgu7g%3D, PID: 21264309
    • Fan X, Shao L, Fang H, Tong W, Cheng Y (2011) Cross-platform comparison of microarray-based multiple-class prediction. PLoS ONE 6:e16067
    • (2011) PLoS ONE , vol.6
    • Fan, X.1    Shao, L.2    Fang, H.3    Tong, W.4    Cheng, Y.5
  • 11
    • 84945923591 scopus 로고
    • A method for comparing two hierarchical clusterings
    • Fowlkes EB, Mallows CL (1983) A method for comparing two hierarchical clusterings. J Am Stat Assoc 78:553–569
    • (1983) J Am Stat Assoc , vol.78 , pp. 553-569
    • Fowlkes, E.B.1    Mallows, C.L.2
  • 12
    • 20944433525 scopus 로고    scopus 로고
    • Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action
    • COI: 1:CAS:528:DC%2BD2MXpvFamsLw%3D, PID: 16005536
    • Ganter B et al (2005) Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action. J Biotechnol 119:219–244
    • (2005) J Biotechnol , vol.119 , pp. 219-244
    • Ganter, B.1
  • 14
    • 84904812772 scopus 로고    scopus 로고
    • Genomic models of short-term exposure accurately predict long-term chemical carcinogenicity and identify putative mechanisms of action
    • PID: 25058030
    • Gusenleitner D, Auerbach SS, Melia T, Gómez HF, Sherr DH, Monti S (2014) Genomic models of short-term exposure accurately predict long-term chemical carcinogenicity and identify putative mechanisms of action. PLoS ONE 9:e102579
    • (2014) PLoS ONE , vol.9
    • Gusenleitner, D.1    Auerbach, S.S.2    Melia, T.3    Gómez, H.F.4    Sherr, D.H.5    Monti, S.6
  • 15
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I, Weston J, Barnhill S, Vapnik V (2002) Gene selection for cancer classification using support vector machines. Mach Learn 46:389–422
    • (2002) Mach Learn , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 17
    • 82755192534 scopus 로고    scopus 로고
    • Improving validation practices in “omics” research
    • COI: 1:CAS:528:DC%2BC3MXhsFCms7rK, PID: 22144616
    • Ioannidis JP, Khoury MJ (2011) Improving validation practices in “omics” research. Science 334:1230–1232
    • (2011) Science , vol.334 , pp. 1230-1232
    • Ioannidis, J.P.1    Khoury, M.J.2
  • 19
    • 79551687759 scopus 로고    scopus 로고
    • Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification
    • COI: 1:CAS:528:DC%2BC3cXkvVOgtb4%3D, PID: 20106945
    • Jennen DG, Magkoufopoulou C, Ketelslegers HB, van Herwijnen MH, Kleinjans JC, van Delft JH (2010) Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci 115:66–79
    • (2010) Toxicol Sci , vol.115 , pp. 66-79
    • Jennen, D.G.1    Magkoufopoulou, C.2    Ketelslegers, H.B.3    van Herwijnen, M.H.4    Kleinjans, J.C.5    van Delft, J.H.6
  • 22
    • 67349286877 scopus 로고    scopus 로고
    • Scoring multiple toxicological endpoints using a toxicogenomics database
    • COI: 1:CAS:528:DC%2BD1MXmtVKhs7g%3D, PID: 19446240
    • Kiyosawa N, Ando Y, Watanabe K, Niino N, Manabe S, Yamoto T (2009) Scoring multiple toxicological endpoints using a toxicogenomics database. Toxicol Lett 188:91–97
    • (2009) Toxicol Lett , vol.188 , pp. 91-97
    • Kiyosawa, N.1    Ando, Y.2    Watanabe, K.3    Niino, N.4    Manabe, S.5    Yamoto, T.6
  • 24
    • 82655174039 scopus 로고    scopus 로고
    • Lactate is an ideal non-invasive marker for evaluating temporal alterations in cell stress and toxicity in repeat dose testing regimes
    • COI: 1:CAS:528:DC%2BC3MXhsVKmt7%2FP, PID: 21635945
    • Limonciel A, Aschauer L, Wilmes A, Prajczer S, Leonard MO, Pfaller W, Jennings P (2011) Lactate is an ideal non-invasive marker for evaluating temporal alterations in cell stress and toxicity in repeat dose testing regimes. Toxicol In Vitro 25:1855–1862
    • (2011) Toxicol In Vitro , vol.25 , pp. 1855-1862
    • Limonciel, A.1    Aschauer, L.2    Wilmes, A.3    Prajczer, S.4    Leonard, M.O.5    Pfaller, W.6    Jennings, P.7
  • 26
    • 33748491517 scopus 로고    scopus 로고
    • The microarray quality control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • MAQC Consortium (2006) The microarray quality control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24:1151–1161
    • (2006) Nat Biotechnol , vol.24 , pp. 1151-1161
  • 27
    • 78650735473 scopus 로고    scopus 로고
    • The microarray quality control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
    • MAQC Consortium (2010) The microarray quality control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 28:827–838
    • (2010) Nat Biotechnol , vol.28 , pp. 827-838
  • 29
    • 84859768493 scopus 로고    scopus 로고
    • Carcinogens induce loss of the primary cilium in human renal proximal tubular epithelial cells independently of effects on the cell cycle
    • COI: 1:CAS:528:DC%2BC38XmvFSjtb8%3D, PID: 22262483
    • Radford R, Slattery C, Jennings P, Blacque O, Pfaller W, Gmuender H, Van Delft J, Ryan MP, McMorrow T (2012) Carcinogens induce loss of the primary cilium in human renal proximal tubular epithelial cells independently of effects on the cell cycle. Am J Physiol Renal Physiol 302:F905–F916
    • (2012) Am J Physiol Renal Physiol , vol.302 , pp. F905-F916
    • Radford, R.1    Slattery, C.2    Jennings, P.3    Blacque, O.4    Pfaller, W.5    Gmuender, H.6    Van Delft, J.7    Ryan, M.P.8    McMorrow, T.9
  • 30
    • 84884865791 scopus 로고    scopus 로고
    • Mechanisms of chemical carcinogenesis in the kidneys
    • COI: 1:CAS:528:DC%2BC2cXislyjur8%3D, PID: 24071941
    • Radford R, Frain H, Ryan MP, Slattery C, McMorrow T (2013) Mechanisms of chemical carcinogenesis in the kidneys. Int J Mol Sci 14:19416–19433
    • (2013) Int J Mol Sci , vol.14 , pp. 19416-19433
    • Radford, R.1    Frain, H.2    Ryan, M.P.3    Slattery, C.4    McMorrow, T.5
  • 31
  • 32
    • 0033742687 scopus 로고    scopus 로고
    • Mechanisms of nongenotoxic carcinogenesis and assessment of the human hazard
    • COI: 1:CAS:528:DC%2BD3cXnslygu7w%3D, PID: 11067770
    • Silva Lima B, van der Laan JW (2000) Mechanisms of nongenotoxic carcinogenesis and assessment of the human hazard. Regul Toxicol Pharmacol 32:135–143
    • (2000) Regul Toxicol Pharmacol , vol.32 , pp. 135-143
    • Silva Lima, B.1    van der Laan, J.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.