메뉴 건너뛰기




Volumn 11, Issue 10, 2015, Pages

Detecting Horizontal Gene Transfer between Closely Related Taxa

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; GENE TRANSFER; PHYLOGENETIC;

EID: 84946092485     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004408     Document Type: Article
Times cited : (42)

References (69)
  • 2
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten J., Townsend J., Horizontal gene transfer, genome innovation and evolution,” Nat Rev Microbiol., vol. 3, no. 9, pp. 679–87, 2005.
    • (2005) Nat Rev Microbiol , vol.vol. 3 , Issue.no. 9 , pp. 679-687
    • Gogarten, J.1    Townsend, J.2
  • 3
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle W. F., Phylogenetic classification and the universal tree,” Science, vol. 284, no. 5423, pp. 2124–9, 1999.
    • (1999) Science , vol.vol. 284 , Issue.no. 5423 , pp. 2124-2129
    • Doolittle, W.F.1
  • 4
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: quantification and classification
    • Koonin E. V., Makarova K. S., Aravind L., Horizontal gene transfer in prokaryotes: quantification and classification,” Annu Rev Microbiol, vol. 55, pp. 709–42, 2001.
    • (2001) Annu Rev Microbiol , vol.vol. 55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 5
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • Nakamura Y., Itoh T., Matsuda H., Gojobori T., Biased biological functions of horizontally transferred genes in prokaryotic genomes,” Nat Genet, vol. 36, no. 7, pp. 760–6, 2004.
    • (2004) Nat Genet , vol.vol. 36 , Issue.no. 7 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 6
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H., Lawrence J., Groisman E., Lateral gene transfer and the nature of bacterial innovation,” Nature, vol. 405, no. 6784, pp. 299–304, 2000.
    • (2000) Nature , vol.vol. 405 , Issue.no. 6784 , pp. 299-304
    • Ochman, H.1    Lawrence, J.2    Groisman, E.3
  • 7
    • 35349003200 scopus 로고    scopus 로고
    • Bacterial pathogenomics
    • Pallen M., Wren B. W., Bacterial pathogenomics,” Nature, vol. 449, no. 7164, pp. 835–842, 2007.
    • (2007) Nature , vol.vol. 449 , Issue.no. 7164 , pp. 835-842
    • Pallen, M.1    Wren, B.W.2
  • 8
    • 0034680103 scopus 로고    scopus 로고
    • Pathogenic strategies of enteric bacteria
    • Donnenberg M. S., Pathogenic strategies of enteric bacteria,” Nature, vol. 406, no. 6797, pp. 768–774, 2000.
    • (2000) Nature , vol.vol. 406 , Issue.no. 6797 , pp. 768-774
    • Donnenberg, M.S.1
  • 9
    • 0033401933 scopus 로고    scopus 로고
    • Lateral genomics
    • Doolittle W. F., Lateral genomics,” Trends Cell Biol, vol. 9, no. 12, pp. M5–8, 1999.
    • (1999) Trends Cell Biol , vol.vol. 9 , Issue.no. 12 , pp. 5-8
    • Doolittle, W.F.1
  • 10
  • 11
    • 3042569657 scopus 로고    scopus 로고
    • Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli
    • Daubin V., Ochman H., Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli,” Genome Research, vol. 14, no. 6, pp. 1036–1042, 2004.
    • (2004) Genome Research , vol.vol. 14 , Issue.no. 6 , pp. 1036-1042
    • Daubin, V.1    Ochman, H.2
  • 13
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche C. F., Palmer J. D., Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids,” Mol Biol Evol, vol. 13, no. 6, pp. 873–82, 1996.
    • (1996) Mol Biol Evol , vol.vol. 13 , Issue.no. 6 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 14
    • 33845886105 scopus 로고    scopus 로고
    • Inferring phylogenetic networks by the maximum parsimony criterion: a case study
    • Jin G., Nakhleh L., Snir S., Tuller T., Inferring phylogenetic networks by the maximum parsimony criterion: a case study,” Mol Biol Evol, vol. 24, no. 1, pp. 324–37, 2007.
    • (2007) Mol Biol Evol , vol.vol. 24 , Issue.no. 1 , pp. 324-337
    • Jin, G.1    Nakhleh, L.2    Snir, S.3    Tuller, T.4
  • 15
    • 0042027842 scopus 로고    scopus 로고
    • Phylogenetics and the cohesion of bacterial genomes
    • Daubin V., Moran N. A., Ochman H., Phylogenetics and the cohesion of bacterial genomes,” Science, vol. 301, no. 5634, pp. 829–32, 2003.
    • (2003) Science , vol.vol. 301 , Issue.no. 5634 , pp. 829-832
    • Daubin, V.1    Moran, N.A.2    Ochman, H.3
  • 17
    • 1342271382 scopus 로고    scopus 로고
    • From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria
    • Lerat E., Daubin V., Moran N. A., From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-proteobacteria,” PLoS Biol, vol. 1, no. 1, p. E19, 2003.
    • (2003) PLoS Biol , vol.vol. 1 , Issue.no. 1 , pp. 19
    • Lerat, E.1    Daubin, V.2    Moran, N.A.3
  • 18
    • 38549135938 scopus 로고    scopus 로고
    • Alignment Uncertainty and Genomic Analysis
    • Wong K. M., Suchard M. A., Huelsenbeck J. P., Alignment Uncertainty and Genomic Analysis,” Science, vol. 319, no. 5862, pp. 473–476, 2008.
    • (2008) Science , vol.vol. 319 , Issue.no. 5862 , pp. 473-476
    • Wong, K.M.1    Suchard, M.A.2    Huelsenbeck, J.P.3
  • 19
    • 67649217482 scopus 로고    scopus 로고
    • Uniting Alignments and Trees
    • Loytynoja A., Goldman N., Uniting Alignments and Trees,” Science, vol. 324, no. 5934, pp. 1528–1529, 2009.
    • (2009) Science , vol.vol. 324 , Issue.no. 5934 , pp. 1528-1529
    • Loytynoja, A.1    Goldman, N.2
  • 20
    • 0035399931 scopus 로고    scopus 로고
    • Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
    • Karlin S., Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes,” Trends in Microbiology, vol. 9, no. 7, pp. 335–343, 2001.
    • (2001) Trends in Microbiology , vol.vol. 9 , Issue.no. 7 , pp. 335-343
    • Karlin, S.1
  • 21
    • 0346726023 scopus 로고    scopus 로고
    • Neutral mutations and neutral substitutions in bacterial genomes
    • Ochman H., Neutral mutations and neutral substitutions in bacterial genomes,” Mol Biol Evol, vol. 20, no. 12, pp. 2091–6, 2003.
    • (2003) Mol Biol Evol , vol.vol. 20 , Issue.no. 12 , pp. 2091-2096
    • Ochman, H.1
  • 22
    • 0033670249 scopus 로고    scopus 로고
    • Horizontal gene transfer in bacterial and archaeal complete genomes
    • Garcia-Vallve S., Romeu A., Palau J., Horizontal gene transfer in bacterial and archaeal complete genomes,” Genome Res, vol. 10, no. 11, pp. 1719–25, 2000.
    • (2000) Genome Res , vol.vol. 10 , Issue.no. 11 , pp. 1719-1725
    • Garcia-Vallve, S.1    Romeu, A.2    Palau, J.3
  • 23
    • 0036145420 scopus 로고    scopus 로고
    • Reconciling the many faces of lateral gene transfer
    • Lawrence J. G., Ochman H., Reconciling the many faces of lateral gene transfer,” Trends Microbiol, vol. 10, no. 1, pp. 1–4, 2002.
    • (2002) Trends Microbiol , vol.vol. 10 , Issue.no. 1 , pp. 1-4
    • Lawrence, J.G.1    Ochman, H.2
  • 24
    • 0034872741 scopus 로고    scopus 로고
    • Limitations of compositional approach to identifying horizontally transferred genes
    • Wang B., Limitations of compositional approach to identifying horizontally transferred genes,” J Mol Evol., vol. 53, no. 3, pp. 244–250, 2001.
    • (2001) J Mol Evol. , vol.vol. 53 , Issue.no. 3 , pp. 244-250
    • Wang, B.1
  • 25
    • 33846654919 scopus 로고    scopus 로고
    • Efficient parsimony-based methods for phylogenetic network reconstruction
    • Jin G., Nakhleh L., Snir S., Tuller T., Efficient parsimony-based methods for phylogenetic network reconstruction,” Bioinformatics, vol. 23, no. 2, pp. e123–8, 2007.
    • (2007) Bioinformatics , vol.vol. 23 , Issue.no. 2 , pp. 8-123
    • Jin, G.1    Nakhleh, L.2    Snir, S.3    Tuller, T.4
  • 26
    • 34447513240 scopus 로고    scopus 로고
    • Darkhorse: a method for genome-wide prediction of horizontal gene transfer
    • Podell S., Gaasterland T., Darkhorse: a method for genome-wide prediction of horizontal gene transfer,” Genome Biology, vol. 8, no. 2, p. R16, 2007.
    • (2007) Genome Biology , vol.vol. 8 , Issue.no. 2 , pp. 16
    • Podell, S.1    Gaasterland, T.2
  • 28
    • 38849112675 scopus 로고    scopus 로고
    • Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    • Engström P. G., Ho Sui S. J., Drivenes y., Becker T. S., Lenhard B., Genomic regulatory blocks underlie extensive microsynteny conservation in insects,” Genome Research, vol. 17, no. 12, pp. 1898–1908, 2007.
    • (2007) Genome Research , vol.vol. 17 , Issue.no. 12 , pp. 1898-1908
    • Engström, P.G.1    Ho Sui, S.J.2    Drivenes, y.3    Becker, T.S.4    Lenhard, B.5
  • 30
    • 0030130366 scopus 로고    scopus 로고
    • Genome rearrangements and sorting by reversals
    • Bafna V., Pevzner P. A., Genome rearrangements and sorting by reversals,” SIAM J. Comput., vol. 25, pp. 272–289, Feb. 1996.
    • (1996) SIAM J. Comput. , vol.vol. 25 , pp. 272-289
    • Bafna, V.1    Pevzner, P.A.2
  • 33
    • 58149492429 scopus 로고    scopus 로고
    • Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
    • Novichkov P. S., Wolf Y. I., Dubchak I., Koonin E. V., Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes,” Journal of Bacteriology, vol. 191, no. 1, pp. 65–73, 2009.
    • (2009) Journal of Bacteriology , vol.vol. 191 , Issue.no. 1 , pp. 65-73
    • Novichkov, P.S.1    Wolf, Y.I.2    Dubchak, I.3    Koonin, E.V.4
  • 34
    • 33645313846 scopus 로고    scopus 로고
    • Chromosome Evolution in the Thermotogales: Large-Scale Inversions and Strain Diversification of CRISPR Sequences
    • DeBoy R. T., Mongodin E. F., Emerson J. B., Nelson K. E., Chromosome Evolution in the Thermotogales: Large-Scale Inversions and Strain Diversification of CRISPR Sequences,” J. Bacteriol., vol. 188, no. 7, pp. 2364–2374, 2006.
    • (2006) J. Bacteriol. , vol.vol. 188 , Issue.no. 7 , pp. 2364-2374
    • DeBoy, R.T.1    Mongodin, E.F.2    Emerson, J.B.3    Nelson, K.E.4
  • 35
    • 84870689997 scopus 로고    scopus 로고
    • Universal pacemaker of genome evolution
    • Snir S., Wolf Y., Koonin E., Universal pacemaker of genome evolution,” PLoS Comput Biol, vol. 8, 11 2012.
    • (2012) PLoS Comput Biol , vol.vol. 8 , Issue.11
    • Snir, S.1    Wolf, Y.2    Koonin, E.3
  • 36
    • 84872619745 scopus 로고    scopus 로고
    • Evolution: Genomic pacemakers or ticking clocks?
    • Muers M., Evolution: Genomic pacemakers or ticking clocks?,” Nat. Rev. Genet., vol. 14, no. 81, 2013.
    • (2013) Nat. Rev. Genet. , vol.vol. 14 , Issue.no. 81
    • Muers, M.1
  • 37
    • 84891687862 scopus 로고    scopus 로고
    • Stability along with extreme variability in core genome evolution
    • Wolf Y. I., Snir S., Koonin E. V., Stability along with extreme variability in core genome evolution,” Genome Biology and Evolution, vol. 5, no. 7, pp. 1393–1402, 2013.
    • (2013) Genome Biology and Evolution , vol.vol. 5 , Issue.no. 7 , pp. 1393-1402
    • Wolf, Y.I.1    Snir, S.2    Koonin, E.V.3
  • 39
    • 26844458739 scopus 로고    scopus 로고
    • Nakhleh L., Ruths D., Wang L.-S., Wang L., Riata-hgt: A fast and accurate heuristic for reconstructing horizontal gene transfer,” in Computing and Combinatorics Lecture Notes in Computer Science, pp. 84–93, Springer Berlin / Heidelberg, 2005.
    • (2005) Computing and Combinatorics , pp. 84-93
    • Nakhleh, L.1    Ruths, D.2    Wang, L.-S.3    Wang, L.4
  • 46
    • 79957787637 scopus 로고    scopus 로고
    • Whole-genome phylogeny of escherichia coli/shigella group by feature frequency profiles (ffps)
    • Sims G. E., Kim S.-H., Whole-genome phylogeny of escherichia coli/shigella group by feature frequency profiles (ffps),” Proceedings of the National Academy of Sciences, vol. 108, no. 20, pp. 8329–8334, 2011.
    • (2011) Proceedings of the National Academy of Sciences , vol.vol. 108 , Issue.no. 20 , pp. 8329-8334
    • Sims, G.E.1    Kim, S.-H.2
  • 47
    • 84868225149 scopus 로고    scopus 로고
    • Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse escherichia coli genomes
    • Kaas R., Friis C., Ussery D., Aarestrup F., Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse escherichia coli genomes,” BMC Genomics, vol. 13, no. 1, p. 577, 2012.
    • (2012) BMC Genomics , vol.vol. 13 , Issue.no. 1 , pp. 577
    • Kaas, R.1    Friis, C.2    Ussery, D.3    Aarestrup, F.4
  • 48
    • 84865818495 scopus 로고    scopus 로고
    • A phylogenomic analysis of escherichia coli / shigella group: implications of genomic features associated with pathogenicity and ecological adaptation
    • Zhang Y., Lin K., A phylogenomic analysis of escherichia coli / shigella group: implications of genomic features associated with pathogenicity and ecological adaptation,” BMC Evolutionary Biology, vol. 12, no. 1, p. 174, 2012.
    • (2012) BMC Evolutionary Biology , vol.vol. 12 , Issue.no. 1 , pp. 174
    • Zhang, Y.1    Lin, K.2
  • 49
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced escherichia coli genomes
    • Lukjancenko O., Wassenaar T., Ussery D., Comparison of 61 sequenced escherichia coli genomes,” Microbial Ecology, vol. 60, no. 4, pp. 708–720, 2010.
    • (2010) Microbial Ecology , vol.vol. 60 , Issue.no. 4 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.2    Ussery, D.3
  • 50
    • 0019275871 scopus 로고
    • Purification & properties of valyl-trna synthetase from mycobacterium tuberculosis h37rv
    • Natarajan V., KP G., Purification & properties of valyl-trna synthetase from mycobacterium tuberculosis h37rv,” Indian J Biochem Biophys, vol. 17, pp. 330–4, Oct. 1980.
    • (1980) Indian J Biochem Biophys , vol.vol. 17 , pp. 330-334
    • Natarajan, V.1    Kp, G.2
  • 51
    • 0037244722 scopus 로고    scopus 로고
    • Proteome analysis of escherichia coli k-12 by two-dimensional native-state chromatography and maldi-ms
    • Champion M. M., Campbell C. S., Siegele D. A., Russell D. H., Hu J. C., Proteome analysis of escherichia coli k-12 by two-dimensional native-state chromatography and maldi-ms,” Molecular Microbiology, vol. 47, no. 2, pp. 383–396, 2003.
    • (2003) Molecular Microbiology , vol.vol. 47 , Issue.no. 2 , pp. 383-396
    • Champion, M.M.1    Campbell, C.S.2    Siegele, D.A.3    Russell, D.H.4    Hu, J.C.5
  • 52
    • 0032830481 scopus 로고    scopus 로고
    • Evolution of aminoacyl-trna synthetases—analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
    • Wolf Y. I., Aravind L., Grishin N. V., Koonin E. V., Evolution of aminoacyl-trna synthetases—analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events,” Genome Research, vol. 9, no. 8, pp. 689–710, 1999.
    • (1999) Genome Research , vol.vol. 9 , Issue.no. 8 , pp. 689-710
    • Wolf, Y.I.1    Aravind, L.2    Grishin, N.V.3    Koonin, E.V.4
  • 53
    • 0028070407 scopus 로고
    • Properties and structure of spermidine acetyltransferase in escherichia coli
    • Fukuchi J., Kashiwagi K., Takio K., Igarashi K., Properties and structure of spermidine acetyltransferase in escherichia coli.,” Journal of Biological Chemistry, vol. 269, no. 36, pp. 22581–22585, 1994.
    • (1994) Journal of Biological Chemistry , vol.vol. 269 , Issue.no. 36 , pp. 22581-22585
    • Fukuchi, J.1    Kashiwagi, K.2    Takio, K.3    Igarashi, K.4
  • 54
    • 0033806020 scopus 로고    scopus 로고
    • Spermidine acetyltransferase is required to prevent spermidine toxicity at low temperatures in escherichia coli
    • Limsuwun K., Jones P. G., Spermidine acetyltransferase is required to prevent spermidine toxicity at low temperatures in escherichia coli,” J. Bacteriol., vol. 182, no. 19, pp. 5373–5380, 2000.
    • (2000) J. Bacteriol. , vol.vol. 182 , Issue.no. 19 , pp. 5373-5380
    • Limsuwun, K.1    Jones, P.G.2
  • 55
    • 33646581342 scopus 로고    scopus 로고
    • Horizontal gene transfer of pib-type atpases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils
    • Martinez R. J., Wang Y., Raimondo M. A., Coombs J. M., Barkay T., Sobecky P. A., Horizontal gene transfer of pib-type atpases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils,” Applied and Environmental Microbiology, vol. 72, no. 5, pp. 3111–3118, 2006.
    • (2006) Applied and Environmental Microbiology , vol.vol. 72 , Issue.no. 5 , pp. 3111-3118
    • Martinez, R.J.1    Wang, Y.2    Raimondo, M.A.3    Coombs, J.M.4    Barkay, T.5    Sobecky, P.A.6
  • 56
    • 13844266486 scopus 로고    scopus 로고
    • On the computational complexity of the rooted subtree prune and regraft distance
    • Bordewich M., Semple C., On the computational complexity of the rooted subtree prune and regraft distance,” Annals of Combinatorics, vol. 8, pp. 409–423, 2005.
    • (2005) Annals of Combinatorics , vol.vol. 8 , pp. 409-423
    • Bordewich, M.1    Semple, C.2
  • 58
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: rates of change and exchange
    • Lawrence J., Ochman H., Amelioration of bacterial genomes: rates of change and exchange,” Journal of molecular evolution, vol. 44, no. 4, pp. 383–397, 1997.
    • (1997) Journal of molecular evolution , vol.vol. 44 , Issue.no. 4 , pp. 383-397
    • Lawrence, J.1    Ochman, H.2
  • 60
    • 0037250391 scopus 로고    scopus 로고
    • Hgt-db: a database of putative horizontally transferred genes in prokaryotic complete genomes
    • Garcia-Vallve S., Guzman E., Montero M., Romeu A., Hgt-db: a database of putative horizontally transferred genes in prokaryotic complete genomes,” Nucleic acids research, vol. 31, no. 1, p. 187, 2003.
    • (2003) Nucleic acids research , vol.vol. 31 , Issue.no. 1 , pp. 187
    • Garcia-Vallve, S.1    Guzman, E.2    Montero, M.3    Romeu, A.4
  • 61
    • 77649259858 scopus 로고    scopus 로고
    • Inferring and validating horizontal gene transfer events using bipartition dissimilarity
    • Boc A., Philippe H., Makarenkov V., Inferring and validating horizontal gene transfer events using bipartition dissimilarity,” Systematic Biology, vol. 59, no. 2, pp. 195–211, 2010.
    • (2010) Systematic Biology , vol.vol. 59 , Issue.no. 2 , pp. 195-211
    • Boc, A.1    Philippe, H.2    Makarenkov, V.3
  • 62
    • 0032173634 scopus 로고    scopus 로고
    • Global dinucleotide signatures and analysis of genomic heterogeneity
    • Karlin S., Global dinucleotide signatures and analysis of genomic heterogeneity,” Current Opinion in Microbiology, vol. 1, no. 5, pp. 598–610, 1998.
    • (1998) Current Opinion in Microbiology , vol.vol. 1 , Issue.no. 5 , pp. 598-610
    • Karlin, S.1
  • 63
    • 78049418891 scopus 로고    scopus 로고
    • Predicting plasmid promiscuity based on genomic signature
    • Suzuki H., Yano H., Brown C. J., Top E. M., Predicting plasmid promiscuity based on genomic signature,” J. Bacteriol., vol. 192, no. 22, pp. 6045–6055, 2010.
    • (2010) J. Bacteriol. , vol.vol. 192 , Issue.no. 22 , pp. 6045-6055
    • Suzuki, H.1    Yano, H.2    Brown, C.J.3    Top, E.M.4
  • 64
    • 0037315735 scopus 로고    scopus 로고
    • Evolutionary Implications of Microbial Genome Tetranucleotide Frequency Biases
    • Pride D. T., Meinersmann R. J., Wassenaar T. M., Blaser M. J., Evolutionary Implications of Microbial Genome Tetranucleotide Frequency Biases,” Genome Research, vol. 13, no. 2, pp. 145–158, 2003.
    • (2003) Genome Research , vol.vol. 13 , Issue.no. 2 , pp. 145-158
    • Pride, D.T.1    Meinersmann, R.J.2    Wassenaar, T.M.3    Blaser, M.J.4
  • 66
    • 84946030695 scopus 로고    scopus 로고
    • T. N. C. for Biotechnology Information, “Entrez genome.” http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi.
  • 67
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt K. D., Tatusova T., Maglott D. R., NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins,” Nucleic Acids Research, vol. 35, no. suppl 1, pp. D61–D65, 2006.
    • (2006) Nucleic Acids Research , vol.vol. 35 , pp. 61-65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 68
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalty and weight matrix choice
    • Thompson J., Higgins D., Gibson T., CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalty and weight matrix choice,” Nucleic Acids Research, vol. 22, pp. 4673–4780, 1994.
    • (1994) Nucleic Acids Research , vol.vol. 22 , pp. 4673-4780
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 69
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0
    • Guindon S., Dufayard J.-F., Lefort V., Anisimova M., Hordijk W., Gascuel O., New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of phyml 3.0,” Systematic Biology, vol. 59, no. 3, pp. 307–321, 2010.
    • (2010) Systematic Biology , vol.vol. 59 , Issue.no. 3 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.