-
1
-
-
0027236999
-
Transcriptional regulation by cAMP and its receptor protein
-
Kolb, A., Busby, S., Buc, H., Garges, S., and Adhya, S. (1993) Transcriptional regulation by cAMP and its receptor protein. Annu. Rev. Biochem. 62, 749-795
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 749-795
-
-
Kolb, A.1
Busby, S.2
Buc, H.3
Garges, S.4
Adhya, S.5
-
2
-
-
0032698634
-
Transcription activation by catabolite activator protein (CAP)
-
Busby, S., and Ebright, R. H. (1999) Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293, 199-213
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 199-213
-
-
Busby, S.1
Ebright, R.H.2
-
3
-
-
0031803631
-
Inducer exclusion by glucose 6-phosphate in Escherichia coli
-
Hogema, B. M., Arents, J. C., Bader, R., Eijkemans, K., Inada, T., Aiba, H., and Postma, P. W. (1998) Inducer exclusion by glucose 6-phosphate in Escherichia coli. Mol. Microbiol. 28, 755-765
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 755-765
-
-
Hogema, B.M.1
Arents, J.C.2
Bader, R.3
Eijkemans, K.4
Inada, T.5
Aiba, H.6
Postma, P.W.7
-
4
-
-
33644871521
-
Study of highly constitutively active mutants suggests how cAMP activates cAMP receptor protein
-
Youn, H., Kerby, R. L., Conrad, M., and Roberts, G. P. (2006) Study of highly constitutively active mutants suggests how cAMP activates cAMP receptor protein. J. Biol. Chem. 281, 1119-1127
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 1119-1127
-
-
Youn, H.1
Kerby, R.L.2
Conrad, M.3
Roberts, G.P.4
-
5
-
-
70349734666
-
Structure of apo-CAP reveals that large conformational changes are necessary for DNA binding
-
Sharma, H., Yu, S., Kong, J., Wang, J., and Steitz, T. A. (2009) Structure of apo-CAP reveals that large conformational changes are necessary for DNA binding. Proc. Natl. Acad. Sci. U.S.A. 106, 16604-16609
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16604-16609
-
-
Sharma, H.1
Yu, S.2
Kong, J.3
Wang, J.4
Steitz, T.A.5
-
6
-
-
66349083528
-
Structural basis for cAMP-mediated allosteric control of the catabolite activator protein
-
Popovych, N., Tzeng, S. R., Tonelli, M., Ebright, R. H., and Kalodimos, C. G. (2009) Structural basis for cAMP-mediated allosteric control of the catabolite activator protein. Proc. Natl. Acad. Sci. U.S.A. 106, 6927-6932
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 6927-6932
-
-
Popovych, N.1
Tzeng, S.R.2
Tonelli, M.3
Ebright, R.H.4
Kalodimos, C.G.5
-
7
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90 degrees
-
Schultz, S. C., Shields, G. C., and Steitz, T. A. (1991) Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees. Science 253, 1001-1007
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
8
-
-
0022342479
-
Analogs of cyclicAMPthat elicit the biochemically defined conformational change in catabolite gene activator protein (CAP) but do not stimulate binding to DNA
-
Ebright, R. H., Le Grice, S. F., Miller, J. P., and Krakow, J. S. (1985) Analogs of cyclicAMPthat elicit the biochemically defined conformational change in catabolite gene activator protein (CAP) but do not stimulate binding to DNA. J. Mol. Biol. 182, 91-107
-
(1985)
J. Mol. Biol.
, vol.182
, pp. 91-107
-
-
Ebright, R.H.1
Le Grice, S.F.2
Miller, J.P.3
Krakow, J.S.4
-
9
-
-
33947512110
-
A C-helix residue, Arg-123, has important roles in both the active and inactive forms of the cAMP receptor protein
-
Youn, H., Kerby, R. L., Koh, J., and Roberts, G. P. (2007) A C-helix residue, Arg-123, has important roles in both the active and inactive forms of the cAMP receptor protein. J. Biol. Chem. 282, 3632-3639
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 3632-3639
-
-
Youn, H.1
Kerby, R.L.2
Koh, J.3
Roberts, G.P.4
-
10
-
-
46049099791
-
Two-state allosteric modeling suggests protein equilibrium as an integral component for cyclic AMP (cAMP) specificity in the cAMP receptor protein of Escherichia coli
-
Youn, H., Koh, J., and Roberts, G. P. (2008) Two-state allosteric modeling suggests protein equilibrium as an integral component for cyclic AMP (cAMP) specificity in the cAMP receptor protein of Escherichia coli. J. Bacteriol. 190, 4532-4540
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4532-4540
-
-
Youn, H.1
Koh, J.2
Roberts, G.P.3
-
11
-
-
84899656717
-
Unraveling structural mechanisms of allosteric drug action
-
Nussinov, R., and Tsai, C. J. (2014) Unraveling structural mechanisms of allosteric drug action. Trends Pharmacol. Sci. 35, 256-264
-
(2014)
Trends Pharmacol. Sci.
, vol.35
, pp. 256-264
-
-
Nussinov, R.1
Tsai, C.J.2
-
12
-
-
11844254469
-
The cAMP binding domain: An ancient signaling module
-
Berman, H. M., Ten Eyck, L. F., Goodsell, D. S., Haste, N. M., Kornev, A., and Taylor, S. S. (2005) The cAMP binding domain: an ancient signaling module. Proc. Natl. Acad. Sci. U.S.A. 102, 45-50
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 45-50
-
-
Berman, H.M.1
Ten Eyck, L.F.2
Goodsell, D.S.3
Haste, N.M.4
Kornev, A.5
Taylor, S.S.6
-
13
-
-
0019463941
-
Structure of catabolite gene activator protein at 2.9-Å resolution suggests binding to left-handed B-DNA
-
McKay, D. B., and Steitz, T. A. (1981) Structure of catabolite gene activator protein at 2.9-Å resolution suggests binding to left-handed B-DNA. Nature 290, 744-749
-
(1981)
Nature
, vol.290
, pp. 744-749
-
-
McKay, D.B.1
Steitz, T.A.2
-
14
-
-
0034671172
-
Modeling the cAMPinduced allosteric transition using the crystal structure of CAP-cAMP at 2.1-Å resolution
-
Passner, J. M., Schultz, S. C., and Steitz, T. A. (2000) Modeling the cAMPinduced allosteric transition using the crystal structure of CAP-cAMP at 2.1-Å resolution. J. Mol. Biol. 304, 847-859
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 847-859
-
-
Passner, J.M.1
Schultz, S.C.2
Steitz, T.A.3
-
15
-
-
0023778740
-
Mutations in the cyclic AMP binding site of the cyclic AMP receptor protein of Escherichia coli
-
Gronenborn, A. M., Sandulache, R., Gärtner, S., and Clore, G. M. (1988) Mutations in the cyclic AMP binding site of the cyclic AMP receptor protein of Escherichia coli. Biochem. J. 253, 801-807
-
(1988)
Biochem. J.
, vol.253
, pp. 801-807
-
-
Gronenborn, A.M.1
Sandulache, R.2
Gärtner, S.3
Clore, G.M.4
-
16
-
-
0027941670
-
Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: Targeting positions 83, 127 and 128 of the cyclic nucleotide binding pocket
-
Lee, E. J., Glasgow, J., Leu, S. F., Belduz, A. O., and Harman, J. G. (1994) Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: targeting positions 83, 127 and 128 of the cyclic nucleotide binding pocket. Nucleic Acids Res. 22, 2894-2901
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2894-2901
-
-
Lee, E.J.1
Glasgow, J.2
Leu, S.F.3
Belduz, A.O.4
Harman, J.G.5
-
17
-
-
0033545897
-
Position 127 amino acid substitutions affect the formation of CRP:cAMP:lacP complexes but not CRP:cAMP:RNA polymerase complexes at lacP
-
Leu, S. F., Baker, C. H., Lee, E. J., and Harman, J. G. (1999) Position 127 amino acid substitutions affect the formation of CRP:cAMP:lacP complexes but not CRP:cAMP:RNA polymerase complexes at lacP. Biochemistry 38, 6222-6230
-
(1999)
Biochemistry
, vol.38
, pp. 6222-6230
-
-
Leu, S.F.1
Baker, C.H.2
Lee, E.J.3
Harman, J.G.4
-
18
-
-
0029118463
-
Probing the mechanism of CRP activation by site-directed mutagenesis: The role of serine 128 in the allosteric pathway of cAMP receptor protein activation
-
Cheng, X., Kovac, L., and Lee, J. C. (1995) Probing the mechanism of CRP activation by site-directed mutagenesis: the role of serine 128 in the allosteric pathway of cAMP receptor protein activation. Biochemistry 34, 10816-10826
-
(1995)
Biochemistry
, vol.34
, pp. 10816-10826
-
-
Cheng, X.1
Kovac, L.2
Lee, J.C.3
-
19
-
-
0035810698
-
Allosteric regulation of the cAMP receptor protein
-
Harman, J. G. (2001) Allosteric regulation of the cAMP receptor protein. Biochim. Biophys. Acta 1547, 1-17
-
(2001)
Biochim. Biophys. Acta
, vol.1547
, pp. 1-17
-
-
Harman, J.G.1
-
20
-
-
78651189765
-
On the nature of allosteric transitions: A plausible model
-
Monod, J., Wyman, J., and Changeux, J. P. (1965) On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 12, 88-118
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
21
-
-
0033970020
-
Folding and binding cascades: Dynamic landscapes and population shifts
-
Kumar, S., Ma, B., Tsai, C. J., Sinha, N., and Nussinov, R. (2000) Folding and binding cascades: dynamic landscapes and population shifts. Protein Sci. 9, 10-19
-
(2000)
Protein Sci.
, vol.9
, pp. 10-19
-
-
Kumar, S.1
Ma, B.2
Tsai, C.J.3
Sinha, N.4
Nussinov, R.5
-
22
-
-
0036147568
-
Multiple diverse ligands binding at a single protein site: A matter of preexisting populations
-
Ma, B., Shatsky, M., Wolfson, H. J., and Nussinov, R. (2002) Multiple diverse ligands binding at a single protein site: a matter of preexisting populations. Protein Sci. 11, 184-197
-
(2002)
Protein Sci.
, vol.11
, pp. 184-197
-
-
Ma, B.1
Shatsky, M.2
Wolfson, H.J.3
Nussinov, R.4
-
23
-
-
80052531021
-
Ligand responses of Vfr, the virulence factor regulator from Pseudomonas aeruginosa
-
Serate J., Roberts, G. P., Berg, O., and Youn, H. (2011) Ligand responses of Vfr, the virulence factor regulator from Pseudomonas aeruginosa. J. Bacteriol. 193, 4859-4868
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4859-4868
-
-
Serate, J.1
Roberts, G.P.2
Berg, O.3
Youn, H.4
-
24
-
-
0014757386
-
Ageneral method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman S. B., and Wunsch C. D. (1970)Ageneral method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443-453
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
25
-
-
84927696598
-
Identification of bacterial guanylate cyclases
-
Ryu, M. H., Youn, H., Kang, I. H., and Gomelsky, M. (2015) Identification of bacterial guanylate cyclases. Proteins 83, 799-804
-
(2015)
Proteins
, vol.83
, pp. 799-804
-
-
Ryu, M.H.1
Youn, H.2
Kang, I.H.3
Gomelsky, M.4
-
26
-
-
77951243882
-
Mycobacterium tuberculosis cAMP receptor protein (Rv3676) differs from the Escherichia coli paradigm in its cAMP binding and DNA binding properties and transcription activation properties
-
Stapleton, M., Haq, I., Hunt, D. M., Arnvig, K. B., Artymiuk, P. J., Buxton, R. S., and Green, J. (2010) Mycobacterium tuberculosis cAMP receptor protein (Rv3676) differs from the Escherichia coli paradigm in its cAMP binding and DNA binding properties and transcription activation properties. J. Biol. Chem. 285, 7016-7027
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 7016-7027
-
-
Stapleton, M.1
Haq, I.2
Hunt, D.M.3
Arnvig, K.B.4
Artymiuk, P.J.5
Buxton, R.S.6
Green, J.7
-
27
-
-
84902657080
-
SPR analysis of promoter binding of Synechocystis PCC6803 transcription factors NtcA and CRP suggests cross-talk and sheds light on regulation by effector molecules
-
Forcada-Nadal, A., Forchhammer, K., and Rubio, V. (2014) SPR analysis of promoter binding of Synechocystis PCC6803 transcription factors NtcA and CRP suggests cross-talk and sheds light on regulation by effector molecules. FEBS Lett. 588, 2270-2276
-
(2014)
FEBS Lett.
, vol.588
, pp. 2270-2276
-
-
Forcada-Nadal, A.1
Forchhammer, K.2
Rubio, V.3
-
28
-
-
84915750400
-
The crystal structures of apo and cAMP-bound GlxR from Corynebacterium glutamicum reveal structural and dynamic changes upon cAMP binding in CRP/FNR family transcription factors
-
Townsend, P. D., Jungwirth, B., Pojer, F., Bußmann, M., Money, V. A., Cole, S. T., Pühler, A., Tauch, A., Bott, M., Cann, M. J., and Pohl, E. (2014) The crystal structures of apo and cAMP-bound GlxR from Corynebacterium glutamicum reveal structural and dynamic changes upon cAMP binding in CRP/FNR family transcription factors. PLoS ONE 9, e113265
-
(2014)
PLoS ONE
, vol.9
-
-
Townsend, P.D.1
Jungwirth, B.2
Pojer, F.3
Bußmann, M.4
Money, V.A.5
Cole, S.T.6
Pühler, A.7
Tauch, A.8
Bott, M.9
Cann, M.J.10
Pohl, E.11
-
29
-
-
34248359835
-
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8
-
Shinkai, A., Kira, S., Nakagawa, N., Kashihara, A., Kuramitsu, S., and Yokoyama, S. (2007) Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J. Bacteriol. 189, 3891-3901
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3891-3901
-
-
Shinkai, A.1
Kira, S.2
Nakagawa, N.3
Kashihara, A.4
Kuramitsu, S.5
Yokoyama, S.6
-
30
-
-
73649126198
-
Structural insights into the mechanism of the allosteric transitions of Mycobacterium tuberculosis cAMP receptor protein
-
Reddy, M. C., Palaninathan, S. K., Bruning, J. B., Thurman, C., Smith, D., and Sacchettini, J. C. (2009) Structural insights into the mechanism of the allosteric transitions of Mycobacterium tuberculosis cAMP receptor protein. J. Biol. Chem. 284, 36581-36591
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 36581-36591
-
-
Reddy, M.C.1
Palaninathan, S.K.2
Bruning, J.B.3
Thurman, C.4
Smith, D.5
Sacchettini, J.C.6
-
31
-
-
8444245499
-
Crp of Streptomyces coelicolor is the third transcription factor of the large CRP-FNR superfamily able to bind cAMP
-
Derouaux, A., Dehareng, D., Lecocq, E., Halici, S., Nothaft, H., Giannotta, F., Moutzourelis, G., Dusart, J., Devreese, B., Titgemeyer, F., Van Beeumen, J., and Rigali, S. (2004) Crp of Streptomyces coelicolor is the third transcription factor of the large CRP-FNR superfamily able to bind cAMP. Biochem. Biophys. Res. Commun. 325, 983-990
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.325
, pp. 983-990
-
-
Derouaux, A.1
Dehareng, D.2
Lecocq, E.3
Halici, S.4
Nothaft, H.5
Giannotta, F.6
Moutzourelis, G.7
Dusart, J.8
Devreese, B.9
Titgemeyer, F.10
Van Beeumen, J.11
Rigali, S.12
-
32
-
-
0030839962
-
The relationship between external glucose concentration and cAMP levels inside Esche-richia coli: Implications for models of phosphotransferase-mediated regulation of adenylate cyclase
-
Notley-McRobb, L., Death, A., and Ferenci, T. (1997) The relationship between external glucose concentration and cAMP levels inside Esche-richia coli: implications for models of phosphotransferase-mediated regulation of adenylate cyclase. Microbiology 143, 1909-1918
-
(1997)
Microbiology
, vol.143
, pp. 1909-1918
-
-
Notley-McRobb, L.1
Death, A.2
Ferenci, T.3
-
33
-
-
66249104590
-
-
Garland Science, New York
-
Phillips, R., Kondev, J., and Theriot, J. (2009) Physical Biol. Cell, Garland Science, New York
-
(2009)
Physical Biol. Cell
-
-
Phillips, R.1
Kondev, J.2
Theriot, J.3
-
34
-
-
34948909644
-
Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12
-
Bettenbrock, K., Sauter, T., Jahreis, K., Kremling, A., Lengeler, J. W., and Gilles, E. D. (2007) Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12. J. Bacteriol. 189, 6891-6900
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6891-6900
-
-
Bettenbrock, K.1
Sauter, T.2
Jahreis, K.3
Kremling, A.4
Lengeler, J.W.5
Gilles, E.D.6
-
35
-
-
79952262200
-
CAMP receptor protein (CRP) positively regulates the yihU-yshA operon in Salmonella enterica serovar Typhi
-
Villarreal, J. M., Hernández-Lucas, I., Gil, F., Calderón, I. L., Calva, E., and Saavedra, C. P. (2011) cAMP receptor protein (CRP) positively regulates the yihU-yshA operon in Salmonella enterica serovar Typhi. Microbiology 157, 636-647
-
(2011)
Microbiology
, vol.157
, pp. 636-647
-
-
Villarreal, J.M.1
Hernández-Lucas, I.2
Gil, F.3
Calderón, I.L.4
Calva, E.5
Saavedra, C.P.6
-
36
-
-
84887254875
-
Cyclic AMP receptor protein regulates pheromone-mediated bioluminescence at multiple levels in Vibrio fischeri ES114
-
Lyell, N. L., Colton, D. M., Bose, J. L., Tumen-Velasquez, M. P., Kimbrough, J. H., and Stabb, E. V. (2013) Cyclic AMP receptor protein regulates pheromone-mediated bioluminescence at multiple levels in Vibrio fischeri ES114. J. Bacteriol. 195, 5051-5063
-
(2013)
J. Bacteriol.
, vol.195
, pp. 5051-5063
-
-
Lyell, N.L.1
Colton, D.M.2
Bose, J.L.3
Tumen-Velasquez, M.P.4
Kimbrough, J.H.5
Stabb, E.V.6
-
37
-
-
79961160738
-
Crystal structure of the Pseudomonas aeruginosa virulence factor regulator
-
Cordes, T. J., Worzalla, G. A., Ginster, A. M., and Forest, K. T. (2011) Crystal structure of the Pseudomonas aeruginosa virulence factor regulator. J. Bacteriol. 193, 4069-4074
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4069-4074
-
-
Cordes, T.J.1
Worzalla, G.A.2
Ginster, A.M.3
Forest, K.T.4
-
38
-
-
84857920298
-
The Crp regulator of Pseudomonas putida: Evidence of an unusually high affinity for its physiological effector, cAMP
-
Arce-Rodríguez, A., Durante-Rodríguez, G., Platero, R., Krell, T., Calles, B., and de Lorenzo, V. (2012) The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ. Microbiol. 14, 702-713
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 702-713
-
-
Arce-Rodríguez, A.1
Durante-Rodríguez, G.2
Platero, R.3
Krell, T.4
Calles, B.5
De Lorenzo, V.6
-
39
-
-
84893474292
-
Cyclic-AMP and bacterial cyclic-AMP receptor proteins revisited: Adaptation for different ecological niches
-
Green, J., Stapleton, M. R., Smith, L. J., Artymiuk, P. J., Kahramanoglou, C., Hunt, D. M., and Buxton, R. S. (2014) Cyclic-AMP and bacterial cyclic-AMP receptor proteins revisited: adaptation for different ecological niches. Curr. Opin. Microbiol. 18, 1-7
-
(2014)
Curr. Opin. Microbiol.
, vol.18
, pp. 1-7
-
-
Green, J.1
Stapleton, M.R.2
Smith, L.J.3
Artymiuk, P.J.4
Kahramanoglou, C.5
Hunt, D.M.6
Buxton, R.S.7
-
40
-
-
0033516613
-
DNA-induced conformational changes in cyclic AMP receptor protein: Detection and mapping by a protein footprinting technique using multiple chemical proteases
-
Baichoo, N., and Heyduk, T. (1999) DNA-induced conformational changes in cyclic AMP receptor protein: detection and mapping by a protein footprinting technique using multiple chemical proteases. J. Mol. Biol. 290, 37-48
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 37-48
-
-
Baichoo, N.1
Heyduk, T.2
-
41
-
-
0030600480
-
Aset of compatible tac promoter expression vectors
-
Dykxhoorn, D. M., St Pierre, R., and Linn, T. (1996)Aset of compatible tac promoter expression vectors. Gene 177, 133-136
-
(1996)
Gene
, vol.177
, pp. 133-136
-
-
Dykxhoorn, D.M.1
St Pierre, R.2
Linn, T.3
|