Corrigendum to: SPR analysis of promoter binding of Synechocystis PCC6803 transcription factors NtcA and CRP suggests cross-talk and sheds light on regulation by effector molecules (FEBS Letters, (2014), 588, 14, (2270-2276), 10.1016/j.febslet.2014.05.010);SPR analysis of promoter binding of Synechocystis PCC6803 transcription factors NtcA and CRP suggests cross-talk and sheds light on regulation by effector molecules

FEBS Letters

Volumn 588, Issue 14, 2014, Pages 2270-2276

  Forcada Nadal, Alicia ^a   Forchhammer, Karl ^b   Rubio, Vicente ^a,c  

^a INSTITUTO DE BIOMEDICINA DE VALENCIA   (Spain)

^b UNIVERSITY OF TÜBINGEN   (Germany)

^c INSTITUTO DE SALUD CARLOS III   (Spain)

Author keywords

2 Oxoglutarate; Catabolite gene activator protein; Cyanobacteria; Nitrogen metabolism; PipX protein; Protein protein interaction

Indexed keywords

2 OXOGLUTARIC ACID; CYCLIC AMP; CYCLIC AMP RECEPTOR; NITROGEN CONTROL FACTOR OF CYANOBACTERIA; PROTEIN PII INTERACTING PROTEIN X; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NTCA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BINDING AFFINITY; BINDING SITE; CONSENSUS SEQUENCE; CRYSTAL STRUCTURE; GENE EXPRESSION; GLNA GENE; GLNN GENE; MOLECULAR INTERACTION; NITROGEN METABOLISM; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; REGULON; SIGNAL TRANSDUCTION; SURFACE PLASMON RESONANCE; SYNECHOCOCCUS ELONGATUS; SYNECHOCYSTIS;

CYANOBACTERIA; SYNECHOCYSTIS; SYNECHOCYSTIS SP.;

2-OXOGLUTARATE; CATABOLITE GENE ACTIVATOR PROTEIN; CYANOBACTERIA; NITROGEN METABOLISM; PIPX PROTEIN; PROTEIN-PROTEIN INTERACTION;

BACTERIAL PROTEINS; BASE SEQUENCE; CYCLIC AMP; CYCLIC AMP RECEPTOR PROTEIN; DNA, BACTERIAL; GENE EXPRESSION REGULATION, BACTERIAL; KETOGLUTARIC ACIDS; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; SURFACE PLASMON RESONANCE; SYNECHOCYSTIS;

EID: 84902657080     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1002/1873-3468.13162     Document Type: Erratum

References (34)

1. M.A. Vega-Palas, E. Flores, and A. Herrero NtcA, a global nitrogen regulator from the cyanobacterium Synechococcus that belongs to the CRP family of bacterial regulators Mol. Microbiol. 6 1992 1853 1859
2. A. Herrero, A.M. Muro-Pastor, and E. Flores Nitrogen control in cyanobacteria J. Bacteriol. 183 2001 411 425
3. I. Luque, E. Flores, and A. Herrero Molecular mechanism for the operation of nitrogen control in cyanobacteria EMBO J. 13 1994 2862 2869
4. F. Jiang, S. Wisen, M. Widersten, B. Bergman, and B. Mannervik Examination of the transcription factor NtcA-binding motif by in vitro selection of DNA sequences from a random library J. Mol. Biol. 301 2000 783 793
5. O.G. Berg, and P.H. Von Hippel Selection of DNA binding sites by regulatory proteins. The binding specificity of cyclic AMP receptor protein to recognition sites J. Mol. Biol. 200 1988 709 723
6. K. Omagari, H. Yoshimura, T. Suzuki, M. Takano, M. Ohmori, and A. Sarai ΔG-Based prediction and experimental confirmation of SYCRP1-binding sites on the Synechocystis genome FEBS J. 275 2008 4786 4795
7. M. Xu, and Z. Su Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes BMC Genomics 10 2009 23
8. H. Yoshimura, T. Hisabori, S. Yanagisawa, and M. Ohmori Identification and characterization of a novel cAMP receptor protein in the cyanobacterium Synechocystis sp. PCC 6803 J. Biol. Chem. 275 2000 6241 6245
9. H. Yoshimura, S. Yanagisawa, M. Kanehisa, and M. Ohmori Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1 Mol. Microbiol. 43 2002 843 853
10. M.F. Vazquez-Bermudez, A. Herrero, and E. Flores 2-Oxoglutarate increases the binding affinity of the NtcA (nitrogen control) transcription factor for the Synechococcus glnA promoter FEBS Lett. 512 2002 71 74
11. R. Tanigawa, M. Shirokane, S. Maeda, T. Omata, K. Tanaka, and H. Takahashi Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC 7942 by 2-oxoglutarate in vitro Proc. Natl. Acad. Sci. USA 99 2002 4251 4255
12. M.I. Muro-Pastor, J.C. Reyes, and F.J. Florencio Cyanobacteria perceive nitrogen status by sensing intracellular 2-oxoglutarate levels J. Biol. Chem. 276 2001 38320 38328
13. J. Espinosa, K. Forchhammer, S. Burillo, and A. Contreras Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA Mol. Microbiol. 61 2006 457 469
14. J. Espinosa, K. Forchhammer, and A. Contreras Role of Synechococcus PCC 7942 nitrogen regulator protein PipX in NtcA-controlled processes Microbiology 153 2007 711 718
15. J.L. Llácer, J. Espinosa, M.A. Castells, A. Contreras, K. Forchhammer, and V. Rubio Structural basis for the regulation of NtcA-dependent transcription by proteins PipX and PII Proc. Natl. Acad. Sci. USA 107 2010 15397 15402
16. M.X. Zhao, Y.L. Jiang, B.Y. Xu, Y. Chen, C.C. Zhang, and C.Z. Zhou Crystal structure of the cyanobacterial signal transduction protein PII in complex with PipX J. Mol. Biol. 402 2010 552 559
17. M.X. Zhao, Y.L. Jiang, Y.X. He, Y.F. Chen, Y.B. Teng, Y. Chen, C.C. Zhang, and C.Z. Zhou Structural basis for the allosteric control of the global transcription factor NtcA by the nitrogen starvation signal 2-oxoglutarate Proc. Natl. Acad. Sci. USA 107 2010 12487 12492
18. A. Valladares, E. Flores, and A. Herrero Transcription activation by NtcA and 2-oxoglutarate of three genes involved in heterocyst differentiation in the cyanobacterium Anabaena sp. strain PCC 7120 J. Bacteriol. 190 2008 6126 6133
19. S. Picossi, E. Flores, and A. Herrero ChIP analysis unravels an exceptionally wide distribution of DNA binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium BMC Genomics 15 2014 22
20. A. Mérida, E. Flores, and F.J. Florencio Regulation of Anabaena sp. strain PCC 7120 glutamine synthetase activity in a Synechocystis sp. strain PCC6803 derivative strain bearing the Anabaena glnA gene and a mutated host glnA gene J. Bacteriol. 174 1992 650 654
21. J.C. Reyes, and F.J. Florencio A new type of glutamine synthetase in cyanobacteria: the protein encoded by the glnN gene supports nitrogen assimilation in Synechocystis sp. strain PCC 6803 J. Bacteriol. 176 1994 1260 1267
22. J.C. Reyes, M.I. Muro-Pastor, and F.J. Florencio Transcription of glutamine synthetase genes (glnA and glnN) from the cyanobacterium Synechocystis sp. strain PCC 6803 is differently regulated in response to nitrogen availability J. Bacteriol. 179 1997 2678 2689
23. H. Yoshimura, Y. Kaneko, S. Ehira, S. Yoshihara, M. Ikeuchi, and M. Ohmori CccS and CccP are involved in construction of cell surface components in the cyanobacterium Synechocystis sp. strain PCC 6803 Plant Cell Physiol. 51 2010 1163 1172
24. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
25. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
26. D.J. Hart, R.E. Speight, M.A. Cooper, J.D. Sutherland, and J.M. Blackburn The salt dependence of DNA recognition by NF-κB p50: a detailed kinetic analysis of the effects on affinity and specificity Nucleic Acids Res. 27 1999 1063 1069
27. M.F. Aldehni, and K. Forchhammer Analysis of a non-canonical NtcA-dependent promoter in Synechococcus elongatus and its regulation by NtcA and PII Arch. Microbiol. 184 2006 378 386
28. K. Zeth, O. Fokina, and K. Forchhammer Structural basis and target-specific modulation of ADP sensing by the Synechococcus elongatus PII signaling protein J. Biol. Chem. 289 2014 8960 8972
29. Y. Xu, P.D. Carr, P. Clancy, M. Garcia-Dominguez, K. Forchhammer, F. Florencio, S.G. Vasudevan, N. Tandeau de Marsac, and D.L. Ollis The structures of the PII proteins from the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 Acta Crystallogr. D Biol. Crystallogr. 59 2003 2183 2190
30. O. Fokina, V.R. Chellamuthu, K. Forchhammer, and K. Zeth Mechanism of 2-oxoglutarate signaling by the Synechococcus elongatus PII signal transduction protein Proc. Natl. Acad. Sci. USA 107 2010 19760 19765
31. N. Popovych, S.R. Tzeng, M. Tonelli, R.H. Ebright, and C.G. Kalodimos Structural basis for cAMP-mediated allosteric control of the catabolite activator protein Proc. Natl. Acad. Sci. USA 106 2009 6927 6932
32. S.C. Schultz, G.C. Shields, and T.A. Steitz Crystal structure of a CAP DNAcomplex: the DNA is bent by 90 degrees Science 253 1991 1001 1007
33. M. Ohmori, K. Ohmori, and K. Hasunuma Rapid change in cyclic-3′,5′-AMP concentration triggered by a light-off or light-on signal in Anabaena cylindrica Arch. Microbiol. 150 1988 203 204
34. K. Omagari, H. Yoshimura, M. Takano, D. Hao, M. Ohmori, A. Sarai, and A. Suyama Systematic single base-pair substitution analysis of DNA binding by the cAMP receptor protein in cyanobacterium Synechocystis sp. PCC 6803 FEBS Lett. 563 2004 55 58